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P38197 (YBD6_YEAST) Reviewed, UniProtKB/Swiss-Prot

Last modified March 19, 2014. Version 118. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (5) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
UPF0001 protein YBL036C
Gene names
Ordered Locus Names:YBL036C
ORF Names:YBL0413
OrganismSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) [Reference proteome]
Taxonomic identifier559292 [NCBI]
Taxonomic lineageEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces

Protein attributes

Sequence length257 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Cofactor

Pyridoxal phosphate. Ref.7

Miscellaneous

Present with 4890 molecules/cell in log phase SD medium.

Sequence similarities

Belongs to the UPF0001 family.

Ontologies

Binary interactions

With

Entry

#Exp.

IntAct

Notes

itself1EBI-21226,EBI-21226

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed Ref.6
Chain2 – 257256UPF0001 protein YBL036C
PRO_0000163213

Amino acid modifications

Modified residue21N-acetylserine Ref.6
Modified residue491N6-(pyridoxal phosphate)lysine

Experimental info

Sequence conflict81D → G in AAT92893. Ref.4

Secondary structure

.......................................... 257
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P38197 [UniParc].

Last modified October 1, 1994. Version 1.
Checksum: 5643EE0D36B6D85A

FASTA25729,123
        10         20         30         40         50         60 
MSTGITYDED RKTQLIAQYE SVREVVNAEA KNVHVNENAS KILLLVVSKL KPASDIQILY 

        70         80         90        100        110        120 
DHGVREFGEN YVQELIEKAK LLPDDIKWHF IGGLQTNKCK DLAKVPNLYS VETIDSLKKA 

       130        140        150        160        170        180 
KKLNESRAKF QPDCNPILCN VQINTSHEDQ KSGLNNEAEI FEVIDFFLSE ECKYIKLNGL 

       190        200        210        220        230        240 
MTIGSWNVSH EDSKENRDFA TLVEWKKKID AKFGTSLKLS MGMSADFREA IRQGTAEVRI 

       250 
GTDIFGARPP KNEARII 

« Hide

References

« Hide 'large scale' references
[1]"The sequence of a 22.4 kb DNA fragment from the left arm of yeast chromosome II reveals homologues to bacterial proline synthetase and murine alpha-adaptin, as well as a new permease and a DNA-binding protein."
de Wergifosse P., Jacques B., Jonniaux J.-L., Purnelle B., Skala J., Goffeau A.
Yeast 10:1489-1496(1994) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: ATCC 204508 / S288c.
[2]"Complete DNA sequence of yeast chromosome II."
Feldmann H., Aigle M., Aljinovic G., Andre B., Baclet M.C., Barthe C., Baur A., Becam A.-M., Biteau N., Boles E., Brandt T., Brendel M., Brueckner M., Bussereau F., Christiansen C., Contreras R., Crouzet M., Cziepluch C. expand/collapse author list , Demolis N., Delaveau T., Doignon F., Domdey H., Duesterhus S., Dubois E., Dujon B., El Bakkoury M., Entian K.-D., Feuermann M., Fiers W., Fobo G.M., Fritz C., Gassenhuber J., Glansdorff N., Goffeau A., Grivell L.A., de Haan M., Hein C., Herbert C.J., Hollenberg C.P., Holmstroem K., Jacq C., Jacquet M., Jauniaux J.-C., Jonniaux J.-L., Kallesoee T., Kiesau P., Kirchrath L., Koetter P., Korol S., Liebl S., Logghe M., Lohan A.J.E., Louis E.J., Li Z.Y., Maat M.J., Mallet L., Mannhaupt G., Messenguy F., Miosga T., Molemans F., Mueller S., Nasr F., Obermaier B., Perea J., Pierard A., Piravandi E., Pohl F.M., Pohl T.M., Potier S., Proft M., Purnelle B., Ramezani Rad M., Rieger M., Rose M., Schaaff-Gerstenschlaeger I., Scherens B., Schwarzlose C., Skala J., Slonimski P.P., Smits P.H.M., Souciet J.-L., Steensma H.Y., Stucka R., Urrestarazu L.A., van der Aart Q.J.M., Van Dyck L., Vassarotti A., Vetter I., Vierendeels F., Vissers S., Wagner G., de Wergifosse P., Wolfe K.H., Zagulski M., Zimmermann F.K., Mewes H.-W., Kleine K.
EMBO J. 13:5795-5809(1994) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 204508 / S288c.
[3]Saccharomyces Genome Database
Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: ATCC 204508 / S288c.
[4]"Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae."
Hu Y., Rolfs A., Bhullar B., Murthy T.V.S., Zhu C., Berger M.F., Camargo A.A., Kelley F., McCarron S., Jepson D., Richardson A., Raphael J., Moreira D., Taycher E., Zuo D., Mohr S., Kane M.F., Williamson J. expand/collapse author list , Simpson A.J.G., Bulyk M.L., Harlow E., Marsischky G., Kolodner R.D., LaBaer J.
Genome Res. 17:536-543(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: ATCC 204508 / S288c.
[5]"Global analysis of protein expression in yeast."
Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N., O'Shea E.K., Weissman J.S.
Nature 425:737-741(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
[6]"N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB."
Van Damme P., Lasa M., Polevoda B., Gazquez C., Elosegui-Artola A., Kim D.S., De Juan-Pardo E., Demeyer K., Hole K., Larrea E., Timmerman E., Prieto J., Arnesen T., Sherman F., Gevaert K., Aldabe R.
Proc. Natl. Acad. Sci. U.S.A. 109:12449-12454(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT SER-2, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS], CLEAVAGE OF INITIATOR METHIONINE [LARGE SCALE ANALYSIS].
[7]"Structure of a yeast hypothetical protein selected by a structural genomics approach."
Eswaramoorthy S., Gerchman S., Graziano V., Kycia H., Studier W., Swaminathan S.
Acta Crystallogr. D 59:127-135(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS) IN COMPLEX WITH COFACTOR, PYRIDOXAL PHOSPHATE AT LYS-49.
Strain: ATCC 204508 / S288c.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X78214 Genomic DNA. Translation: CAA55058.1.
Z35797 Genomic DNA. Translation: CAA84856.1.
AY692874 Genomic DNA. Translation: AAT92893.1.
BK006936 Genomic DNA. Translation: DAA07083.1.
PIRS50294.
RefSeqNP_009517.1. NM_001178276.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1B54X-ray2.10A1-257[»]
1CT5X-ray2.00A2-257[»]
ProteinModelPortalP38197.
SMRP38197. Positions 4-246.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

BioGrid32661. 50 interactions.
DIPDIP-6608N.
IntActP38197. 4 interactions.
MINTMINT-624974.
STRING4932.YBL036C.

Proteomic databases

PaxDbP38197.
PeptideAtlasP38197.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblFungiYBL036C; YBL036C; YBL036C.
GeneID852244.
KEGGsce:YBL036C.

Organism-specific databases

CYGDYBL036c.
SGDS000000132. YBL036C.

Phylogenomic databases

eggNOGCOG0325.
GeneTreeENSGT00390000004928.
HOGENOMHOG000048983.
KOK06997.
OMAQRPAKAD.
OrthoDBEOG7VX96Z.

Enzyme and pathway databases

BioCycYEAST:G3O-28938-MONOMER.

Gene expression databases

GenevestigatorP38197.

Family and domain databases

InterProIPR001608. Ala_racemase_N.
IPR011078. UPF0001.
[Graphical view]
PANTHERPTHR10146. PTHR10146. 1 hit.
PfamPF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PIRSFPIRSF004848. YBL036c_PLPDEIII. 1 hit.
TIGRFAMsTIGR00044. TIGR00044. 1 hit.
PROSITEPS01211. UPF0001. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceP38197.
NextBio970802.
PROP38197.

Entry information

Entry nameYBD6_YEAST
AccessionPrimary (citable) accession number: P38197
Secondary accession number(s): D6VPW3, Q6B256
Entry history
Integrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: October 1, 1994
Last modified: March 19, 2014
This is version 118 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Relevant documents

Yeast chromosome II

Yeast (Saccharomyces cerevisiae) chromosome II: entries and gene names

Yeast

Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD

Uncharacterized protein families (UPF)

List of uncharacterized protein family (UPF) entries

SIMILARITY comments

Index of protein domains and families

PDB cross-references

Index of Protein Data Bank (PDB) cross-references