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Protein

UPF0001 protein YBL036C

Gene

YBL036C

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Cofactori

GO - Molecular functioni

  • pyridoxal phosphate binding Source: SGD
Complete GO annotation...

Keywords - Ligandi

Pyridoxal phosphate

Enzyme and pathway databases

BioCyciYEAST:G3O-28938-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0001 protein YBL036C
Gene namesi
Ordered Locus Names:YBL036C
ORF Names:YBL0413
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
Proteomesi
  • UP000002311 Componenti: Chromosome II

Organism-specific databases

EuPathDBiFungiDB:YBL036C.
SGDiS000000132. YBL036C.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedCombined sources
ChainiPRO_00001632132 – 257UPF0001 protein YBL036CAdd BLAST256

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylserineCombined sources1
Modified residuei49N6-(pyridoxal phosphate)lysine1

Keywords - PTMi

Acetylation

Proteomic databases

MaxQBiP38197.
PRIDEiP38197.

Interactioni

Protein-protein interaction databases

BioGridi32661. 50 interactors.
DIPiDIP-6608N.
IntActiP38197. 4 interactors.
MINTiMINT-624974.

Structurei

Secondary structure

1257
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi9 – 31Combined sources23
Beta strandi43 – 47Combined sources5
Helixi53 – 62Combined sources10
Beta strandi66 – 69Combined sources4
Helixi72 – 81Combined sources10
Beta strandi87 – 90Combined sources4
Helixi96 – 98Combined sources3
Helixi99 – 104Combined sources6
Beta strandi108 – 114Combined sources7
Helixi117 – 130Combined sources14
Beta strandi132 – 134Combined sources3
Beta strandi137 – 143Combined sources7
Beta strandi146 – 148Combined sources3
Beta strandi151 – 154Combined sources4
Helixi157 – 168Combined sources12
Beta strandi174 – 181Combined sources8
Helixi197 – 213Combined sources17
Beta strandi218 – 220Combined sources3
Turni224 – 226Combined sources3
Helixi227 – 232Combined sources6
Beta strandi236 – 241Combined sources6
Helixi242 – 245Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1B54X-ray2.10A1-257[»]
1CT5X-ray2.00A2-257[»]
ProteinModelPortaliP38197.
SMRiP38197.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP38197.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0001 family.Curated

Phylogenomic databases

GeneTreeiENSGT00390000004928.
HOGENOMiHOG000048983.
InParanoidiP38197.
KOiK06997.
OMAiIKMHSLE.
OrthoDBiEOG092C3DQC.

Family and domain databases

Gene3Di3.20.20.10. 1 hit.
InterProiIPR001608. Ala_racemase_N.
IPR029066. PLP-binding_barrel.
IPR011078. UPF0001.
[Graphical view]
PANTHERiPTHR10146. PTHR10146. 1 hit.
PfamiPF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PIRSFiPIRSF004848. YBL036c_PLPDEIII. 1 hit.
SUPFAMiSSF51419. SSF51419. 1 hit.
TIGRFAMsiTIGR00044. TIGR00044. 1 hit.
PROSITEiPS01211. UPF0001. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P38197-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTGITYDED RKTQLIAQYE SVREVVNAEA KNVHVNENAS KILLLVVSKL
60 70 80 90 100
KPASDIQILY DHGVREFGEN YVQELIEKAK LLPDDIKWHF IGGLQTNKCK
110 120 130 140 150
DLAKVPNLYS VETIDSLKKA KKLNESRAKF QPDCNPILCN VQINTSHEDQ
160 170 180 190 200
KSGLNNEAEI FEVIDFFLSE ECKYIKLNGL MTIGSWNVSH EDSKENRDFA
210 220 230 240 250
TLVEWKKKID AKFGTSLKLS MGMSADFREA IRQGTAEVRI GTDIFGARPP

KNEARII
Length:257
Mass (Da):29,123
Last modified:October 1, 1994 - v1
Checksum:i5643EE0D36B6D85A
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti8D → G in AAT92893 (PubMed:17322287).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X78214 Genomic DNA. Translation: CAA55058.1.
Z35797 Genomic DNA. Translation: CAA84856.1.
AY692874 Genomic DNA. Translation: AAT92893.1.
BK006936 Genomic DNA. Translation: DAA07083.1.
PIRiS50294.
RefSeqiNP_009517.1. NM_001178276.1.

Genome annotation databases

EnsemblFungiiYBL036C; YBL036C; YBL036C.
GeneIDi852244.
KEGGisce:YBL036C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X78214 Genomic DNA. Translation: CAA55058.1.
Z35797 Genomic DNA. Translation: CAA84856.1.
AY692874 Genomic DNA. Translation: AAT92893.1.
BK006936 Genomic DNA. Translation: DAA07083.1.
PIRiS50294.
RefSeqiNP_009517.1. NM_001178276.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1B54X-ray2.10A1-257[»]
1CT5X-ray2.00A2-257[»]
ProteinModelPortaliP38197.
SMRiP38197.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi32661. 50 interactors.
DIPiDIP-6608N.
IntActiP38197. 4 interactors.
MINTiMINT-624974.

Proteomic databases

MaxQBiP38197.
PRIDEiP38197.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYBL036C; YBL036C; YBL036C.
GeneIDi852244.
KEGGisce:YBL036C.

Organism-specific databases

EuPathDBiFungiDB:YBL036C.
SGDiS000000132. YBL036C.

Phylogenomic databases

GeneTreeiENSGT00390000004928.
HOGENOMiHOG000048983.
InParanoidiP38197.
KOiK06997.
OMAiIKMHSLE.
OrthoDBiEOG092C3DQC.

Enzyme and pathway databases

BioCyciYEAST:G3O-28938-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP38197.
PROiP38197.

Family and domain databases

Gene3Di3.20.20.10. 1 hit.
InterProiIPR001608. Ala_racemase_N.
IPR029066. PLP-binding_barrel.
IPR011078. UPF0001.
[Graphical view]
PANTHERiPTHR10146. PTHR10146. 1 hit.
PfamiPF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PIRSFiPIRSF004848. YBL036c_PLPDEIII. 1 hit.
SUPFAMiSSF51419. SSF51419. 1 hit.
TIGRFAMsiTIGR00044. TIGR00044. 1 hit.
PROSITEiPS01211. UPF0001. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYBD6_YEAST
AccessioniPrimary (citable) accession number: P38197
Secondary accession number(s): D6VPW3, Q6B256
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: October 1, 1994
Last modified: November 2, 2016
This is version 139 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 4890 molecules/cell in log phase SD medium.1 Publication

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries
  4. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  5. Yeast chromosome II
    Yeast (Saccharomyces cerevisiae) chromosome II: entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.