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P38192

- RRT1_YEAST

UniProt

P38192 - RRT1_YEAST

Protein

Putative regulator of rDNA transcription protein 1

Gene

RRT1

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 2 out of 5- Protein uncertaini
  1. Functioni

    Identified in a screen for mutants with decreased levels of rDNA transcription.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Putative regulator of rDNA transcription protein 1
    Gene namesi
    Name:RRT1
    Ordered Locus Names:YBL048W
    ORF Names:YBL0519
    OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
    Taxonomic identifieri559292 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
    ProteomesiUP000002311: Chromosome II

    Organism-specific databases

    CYGDiYBL048w.
    SGDiS000000144. RRT1.

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of membrane Source: UniProtKB-KW

    Keywords - Cellular componenti

    Membrane

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 103103Putative regulator of rDNA transcription protein 1PRO_0000202456Add
    BLAST

    Expressioni

    Inductioni

    By the zinc-responsive transcription factor ZAP1 in response to zinc deficiency and by mild heat stress.2 Publications

    Gene expression databases

    GenevestigatoriP38192.

    Interactioni

    Protein-protein interaction databases

    IntActiP38192. 1 interaction.
    MINTiMINT-2493123.
    STRINGi4932.YBL048W.

    Structurei

    3D structure databases

    ProteinModelPortaliP38192.
    ModBaseiSearch...
    MobiDBiSearch...

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei9 – 3325HelicalSequence AnalysisAdd
    BLAST
    Transmembranei40 – 5718HelicalSequence AnalysisAdd
    BLAST

    Family & Domainsi

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Sequencei

    Sequence statusi: Complete.

    P38192-1 [UniParc]FASTAAdd to Basket

    « Hide

    MILFKNLVFL PSILIGYISI RVSLLVWVNW VLVWSSCFQV AFIFSLWYFI    50
    LSIYTFFYSK KIKQIISYEP SYFVFSYRAI DLCPERVLLY FFCIFNNVVF 100
    PML 103
    Length:103
    Mass (Da):12,447
    Last modified:October 1, 1994 - v1
    Checksum:i43264FBB6BE4A0C3
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Z23261 Genomic DNA. No translation available.
    Z35809 Genomic DNA. Translation: CAA84868.1.
    AY693312 Genomic DNA. Translation: AAT93331.1.
    BK006936 Genomic DNA. No translation available.
    PIRiS45783.

    Genome annotation databases

    EnsemblFungiiYBL048W; YBL048W; YBL048W.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Z23261 Genomic DNA. No translation available.
    Z35809 Genomic DNA. Translation: CAA84868.1 .
    AY693312 Genomic DNA. Translation: AAT93331.1 .
    BK006936 Genomic DNA. No translation available.
    PIRi S45783.

    3D structure databases

    ProteinModelPortali P38192.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi P38192. 1 interaction.
    MINTi MINT-2493123.
    STRINGi 4932.YBL048W.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblFungii YBL048W ; YBL048W ; YBL048W .

    Organism-specific databases

    CYGDi YBL048w.
    SGDi S000000144. RRT1.

    Gene expression databases

    Genevestigatori P38192.

    Family and domain databases

    ProtoNeti Search...

    Publicationsi

    1. "Sequencing and functional analysis of a 32,560 bp segment on the left arm of yeast chromosome II. Identification of 26 open reading frames, including the KIP1 and SEC17 genes."
      Scherens B., el Bakkoury M., Vierendeels F., Dubois E., Messenguy F.
      Yeast 9:1355-1371(1993) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    2. "Complete DNA sequence of yeast chromosome II."
      Feldmann H., Aigle M., Aljinovic G., Andre B., Baclet M.C., Barthe C., Baur A., Becam A.-M., Biteau N., Boles E., Brandt T., Brendel M., Brueckner M., Bussereau F., Christiansen C., Contreras R., Crouzet M., Cziepluch C.
      , Demolis N., Delaveau T., Doignon F., Domdey H., Duesterhus S., Dubois E., Dujon B., El Bakkoury M., Entian K.-D., Feuermann M., Fiers W., Fobo G.M., Fritz C., Gassenhuber J., Glansdorff N., Goffeau A., Grivell L.A., de Haan M., Hein C., Herbert C.J., Hollenberg C.P., Holmstroem K., Jacq C., Jacquet M., Jauniaux J.-C., Jonniaux J.-L., Kallesoee T., Kiesau P., Kirchrath L., Koetter P., Korol S., Liebl S., Logghe M., Lohan A.J.E., Louis E.J., Li Z.Y., Maat M.J., Mallet L., Mannhaupt G., Messenguy F., Miosga T., Molemans F., Mueller S., Nasr F., Obermaier B., Perea J., Pierard A., Piravandi E., Pohl F.M., Pohl T.M., Potier S., Proft M., Purnelle B., Ramezani Rad M., Rieger M., Rose M., Schaaff-Gerstenschlaeger I., Scherens B., Schwarzlose C., Skala J., Slonimski P.P., Smits P.H.M., Souciet J.-L., Steensma H.Y., Stucka R., Urrestarazu L.A., van der Aart Q.J.M., Van Dyck L., Vassarotti A., Vetter I., Vierendeels F., Vissers S., Wagner G., de Wergifosse P., Wolfe K.H., Zagulski M., Zimmermann F.K., Mewes H.-W., Kleine K.
      EMBO J. 13:5795-5809(1994) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    3. Cited for: GENOME REANNOTATION.
      Strain: ATCC 204508 / S288c.
    4. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    5. "Genome-wide characterization of the Zap1p zinc-responsive regulon in yeast."
      Lyons T.J., Gasch A.P., Gaither L.A., Botstein D., Brown P.O., Eide D.J.
      Proc. Natl. Acad. Sci. U.S.A. 97:7957-7962(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: INDUCTION.
    6. "Response of genes associated with mitochondrial function to mild heat stress in yeast Saccharomyces cerevisiae."
      Sakaki K., Tashiro K., Kuhara S., Mihara K.
      J. Biochem. 134:373-384(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: INDUCTION.
    7. "Genetic identification of factors that modulate ribosomal DNA transcription in Saccharomyces cerevisiae."
      Hontz R.D., Niederer R.O., Johnson J.M., Smith J.S.
      Genetics 182:105-119(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE NAME.

    Entry informationi

    Entry nameiRRT1_YEAST
    AccessioniPrimary (citable) accession number: P38192
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 1, 1994
    Last sequence update: October 1, 1994
    Last modified: October 1, 2014
    This is version 64 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programFungal Protein Annotation Program

    Miscellaneousi

    Caution

    Product of a dubious gene prediction.Curated

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Yeast
      Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
    2. Yeast chromosome II
      Yeast (Saccharomyces cerevisiae) chromosome II: entries and gene names

    External Data

    Dasty 3