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P38081

- YBQ6_YEAST

UniProt

P38081 - YBQ6_YEAST

Protein

Uncharacterized glycosyl hydrolase YBR056W

Gene

YBR056W

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 106 (01 Oct 2014)
      Sequence version 1 (01 Oct 1994)
      Previous versions | rss
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    Functioni

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei236 – 2361Proton donorBy similarity
    Active sitei333 – 3331NucleophileBy similarity

    GO - Molecular functioni

    1. hydrolase activity, acting on glycosyl bonds Source: UniProtKB-KW
    2. protein binding Source: IntAct

    GO - Biological processi

    1. carbohydrate metabolic process Source: InterPro

    Keywords - Molecular functioni

    Glycosidase, Hydrolase

    Enzyme and pathway databases

    BioCyciYEAST:G3O-29027-MONOMER.

    Protein family/group databases

    CAZyiGH5. Glycoside Hydrolase Family 5.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Uncharacterized glycosyl hydrolase YBR056W (EC:3.2.1.-)
    Gene namesi
    Ordered Locus Names:YBR056W
    ORF Names:YBR0510
    OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
    Taxonomic identifieri559292 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
    ProteomesiUP000002311: Chromosome II

    Organism-specific databases

    CYGDiYBR056w.
    SGDiS000000260. YBR056W.

    Subcellular locationi

    GO - Cellular componenti

    1. mitochondrial intermembrane space Source: SGD

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 501501Uncharacterized glycosyl hydrolase YBR056WPRO_0000184055Add
    BLAST

    Proteomic databases

    MaxQBiP38081.
    PaxDbiP38081.
    PeptideAtlasiP38081.

    Expressioni

    Gene expression databases

    GenevestigatoriP38081.

    Interactioni

    Binary interactionsi

    WithEntry#Exp.IntActNotes
    RSP5P399403EBI-21453,EBI-16219

    Protein-protein interaction databases

    BioGridi32758. 39 interactions.
    DIPiDIP-5444N.
    IntActiP38081. 10 interactions.
    MINTiMINT-518368.
    STRINGi4932.YBR056W.

    Structurei

    3D structure databases

    ProteinModelPortaliP38081.
    SMRiP38081. Positions 48-401.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    eggNOGiCOG2730.
    HOGENOMiHOG000248490.
    OMAiETICTID.
    OrthoDBiEOG773XR3.

    Family and domain databases

    Gene3Di3.20.20.80. 1 hit.
    InterProiIPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P38081-1 [UniParc]FASTAAdd to Basket

    « Hide

    MIGSLRNKFE HFKVSEKGGQ NLSTTLPKLP PAKDLDRSTI YKYRYNYGVN    50
    LGALFVLEPW IFSKETICTI DGKEYDSEFD AISQQLKKHS SEDVAKMLSD 100
    HYKKYIDRID WEWLSKDAHI TALRIPIGYW HVEDGKHLDS LPFAPLRKVY 150
    ELAKPWEKLG ELINNAKKMS IGVLIDLHGL PGGANCDSHS GSKSGEAAFF 200
    HKEKYMTKVY KDILPAIINT MTLGNENIIG IQVVNEACFD NNPKGQKFYY 250
    SEAINTVEKL QPGLPVIISD GWWPQQWADW VKEKHFSEIV VIDSHVYRCF 300
    SDSDKSKDAN SIIKDLPNTV NFPHEDADYT VGEFSGVLDG QTWNKTSGDR 350
    DAIVQKYVQT QADVFSHVAS WGWFFWTLQF EYGDGGEWGL APMMQKGNLP 400
    KRPHGDDLQV DKKKIDSIIH EHEAYWNGKG KNFEHWRFED GIKTAVDDII 450
    AFRKFDNSLI GRWHSWKSQR RAEYVSAKKD SEFMWEWDQG YQRGLDEFNK 500
    Y 501
    Length:501
    Mass (Da):57,822
    Last modified:October 1, 1994 - v1
    Checksum:i5133A161736ADDD3
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Z35925 Genomic DNA. Translation: CAA84999.1.
    Z46260 Genomic DNA. Translation: CAA86399.1.
    BK006936 Genomic DNA. Translation: DAA07175.1.
    PIRiS45914.
    RefSeqiNP_009612.1. NM_001178404.1.

    Genome annotation databases

    EnsemblFungiiYBR056W; YBR056W; YBR056W.
    GeneIDi852346.
    KEGGisce:YBR056W.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Z35925 Genomic DNA. Translation: CAA84999.1 .
    Z46260 Genomic DNA. Translation: CAA86399.1 .
    BK006936 Genomic DNA. Translation: DAA07175.1 .
    PIRi S45914.
    RefSeqi NP_009612.1. NM_001178404.1.

    3D structure databases

    ProteinModelPortali P38081.
    SMRi P38081. Positions 48-401.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 32758. 39 interactions.
    DIPi DIP-5444N.
    IntActi P38081. 10 interactions.
    MINTi MINT-518368.
    STRINGi 4932.YBR056W.

    Protein family/group databases

    CAZyi GH5. Glycoside Hydrolase Family 5.

    Proteomic databases

    MaxQBi P38081.
    PaxDbi P38081.
    PeptideAtlasi P38081.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblFungii YBR056W ; YBR056W ; YBR056W .
    GeneIDi 852346.
    KEGGi sce:YBR056W.

    Organism-specific databases

    CYGDi YBR056w.
    SGDi S000000260. YBR056W.

    Phylogenomic databases

    eggNOGi COG2730.
    HOGENOMi HOG000248490.
    OMAi ETICTID.
    OrthoDBi EOG773XR3.

    Enzyme and pathway databases

    BioCyci YEAST:G3O-29027-MONOMER.

    Miscellaneous databases

    NextBioi 971087.

    Gene expression databases

    Genevestigatori P38081.

    Family and domain databases

    Gene3Di 3.20.20.80. 1 hit.
    InterProi IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Sequence and analysis of 24 kb on chromosome II of Saccharomyces cerevisiae."
      Aljinovic G., Pohl T.M.
      Yeast 11:475-479(1995) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    2. "Complete DNA sequence of yeast chromosome II."
      Feldmann H., Aigle M., Aljinovic G., Andre B., Baclet M.C., Barthe C., Baur A., Becam A.-M., Biteau N., Boles E., Brandt T., Brendel M., Brueckner M., Bussereau F., Christiansen C., Contreras R., Crouzet M., Cziepluch C.
      , Demolis N., Delaveau T., Doignon F., Domdey H., Duesterhus S., Dubois E., Dujon B., El Bakkoury M., Entian K.-D., Feuermann M., Fiers W., Fobo G.M., Fritz C., Gassenhuber J., Glansdorff N., Goffeau A., Grivell L.A., de Haan M., Hein C., Herbert C.J., Hollenberg C.P., Holmstroem K., Jacq C., Jacquet M., Jauniaux J.-C., Jonniaux J.-L., Kallesoee T., Kiesau P., Kirchrath L., Koetter P., Korol S., Liebl S., Logghe M., Lohan A.J.E., Louis E.J., Li Z.Y., Maat M.J., Mallet L., Mannhaupt G., Messenguy F., Miosga T., Molemans F., Mueller S., Nasr F., Obermaier B., Perea J., Pierard A., Piravandi E., Pohl F.M., Pohl T.M., Potier S., Proft M., Purnelle B., Ramezani Rad M., Rieger M., Rose M., Schaaff-Gerstenschlaeger I., Scherens B., Schwarzlose C., Skala J., Slonimski P.P., Smits P.H.M., Souciet J.-L., Steensma H.Y., Stucka R., Urrestarazu L.A., van der Aart Q.J.M., Van Dyck L., Vassarotti A., Vetter I., Vierendeels F., Vissers S., Wagner G., de Wergifosse P., Wolfe K.H., Zagulski M., Zimmermann F.K., Mewes H.-W., Kleine K.
      EMBO J. 13:5795-5809(1994) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    3. Cited for: GENOME REANNOTATION.
      Strain: ATCC 204508 / S288c.
    4. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].

    Entry informationi

    Entry nameiYBQ6_YEAST
    AccessioniPrimary (citable) accession number: P38081
    Secondary accession number(s): D6VQ55
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 1, 1994
    Last sequence update: October 1, 1994
    Last modified: October 1, 2014
    This is version 106 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programFungal Protein Annotation Program

    Miscellaneousi

    Miscellaneous

    Present with 1960 molecules/cell in log phase SD medium.1 Publication

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    2. SIMILARITY comments
      Index of protein domains and families
    3. Yeast
      Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
    4. Yeast chromosome II
      Yeast (Saccharomyces cerevisiae) chromosome II: entries and gene names

    External Data

    Dasty 3