Reviewed,
UniProtKB/Swiss-Prot P38081 (YBQ6_YEAST)
Last modified
November 25, 2008.
Version 61.
History...
Clusters with 100%,
90%,
50% identity |
Documents (4) |
Third-party data |
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Names and origin
| Protein names | Recommended name: Uncharacterized glycosyl hydrolase YBR056W EC=3.2.1.- | ||||
| Gene names |
| ||||
| Organism | Saccharomyces cerevisiae (Baker's yeast) [Complete proteome] | ||||
| Taxonomic identifier | 4932 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Fungi › Dikarya › Ascomycota › Saccharomycotina › Saccharomycetes › Saccharomycetales › Saccharomycetaceae › Saccharomyces |
Protein attributes
| Sequence length | 501 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Miscellaneous | Present with 1960 molecules/cell in log phase SD medium. |
| Sequence similarities | Belongs to the glycosyl hydrolase 5 (cellulase A) family. |
Ontologies
Keywords | |
|---|---|
| Molecular function | Glycosidase Hydrolase |
| Technical term | Complete proteome |
Gene Ontology (GO) | |
| Biological process | carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro |
| Cellular component | cytoplasm Inferred from direct assay. Source: SGD |
| Molecular function | cation binding Inferred from electronic annotation. Source: InterPro hydrolase activity, acting on glycosyl bondsInferred from electronic annotation. Source: UniProtKB-KW identical protein bindingInferred from physical interaction. Source: IntAct |
| Complete GO annotation... | |
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| itself | 1 | EBI-21453,EBI-21453 | ||
| P43582 | 1 | EBI-21453,EBI-22766 | ||
| P43591 | 1 | EBI-21453,EBI-22928 | ||
| AUS1 | Q08409 | 1 | EBI-21453,EBI-35723 | |
| ESS1 | P22696 | 1 | EBI-21453,EBI-6679 | |
| PRP40 | P33203 | 1 | EBI-21453,EBI-701 | |
| RSP5 | P39940 | 1 | EBI-21453,EBI-16219 | |
| SET2 | P46995 | 1 | EBI-21453,EBI-16985 | |
| SSM4 | P40318 | 1 | EBI-21453,EBI-18208 | |
| URN1 | Q06525 | 1 | EBI-21453,EBI-35138 | |
| VID30 | P53076 | 1 | EBI-21453,EBI-24173 |
Sequence annotation (Features)
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Sequence and analysis of 24 kb on chromosome II of Saccharomyces cerevisiae." Aljinovic G., Pohl T.M. Yeast 11:475-479(1995) [PubMed: 7597852] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: ATCC 204508 / S288c. |
| [2] | "Complete DNA sequence of yeast chromosome II." Feldmann H., Aigle M., Aljinovic G., Andre B., Baclet M.C., Barthe C., Baur A., Becam A.-M., Biteau N., Boles E., Brandt T., Brendel M., Brueckner M., Bussereau F., Christiansen C., Contreras R., Crouzet M., Cziepluch C. Kleine K.EMBO J. 13:5795-5809(1994) [PubMed: 7813418] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 204508 / S288c. |
| [3] | "Global analysis of protein expression in yeast." Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N., O'Shea E.K., Weissman J.S. Nature 425:737-741(2003) [PubMed: 14562106] [Abstract] Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS]. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| Z35925 Genomic DNA. Translation: CAA84999.1. Z46260 Genomic DNA. Translation: CAA86399.1. | |
| PIR | S45914. |
| RefSeq | NP_009612.1. |
3D structure databases | |
| ModBase | Search... |
Protein-protein interaction databases | |
| DIP | DIP:5444N. |
| IntAct | P38081. |
Proteomic databases | |
| PeptideAtlas | P38081. |
Genome annotation databases | |
| Ensembl | YBR056W. Saccharomyces cerevisiae. [Contig view] |
| GeneID | 852346. |
| GenomeReviews | Gene locus YBR056W in contig Y13134_GR. |
| KEGG | sce:YBR056W. |
| NMPDR | fig|4932.3.peg.307. |
Organism-specific databases | |
| CYGD | YBR056w. |
| SGD | S000000260. YBR056W. |
| Yeast-GFP | Search... |
Phylogenomic databases | |
| HOGENOM | P38081. |
Gene expression databases | |
| ArrayExpress | P38081. |
| GermOnline | YBR056W. Saccharomyces cerevisiae. |
Family and domain databases | |
| InterPro | IPR001547. Glyco_hydro_5. IPR013781. Glyco_hydro_sub_cat. [Graphical view] |
| Gene3D | G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit. |
| PROSITE | PS00659. GLYCOSYL_HYDROL_F5. False negative. [Graphical view] |
| ProtoNet | Search... |
Other Resources | |
| LinkHub | P38081. |
| NextBio | 971087. |
Entry information
| Entry name | YBQ6_YEAST | ||||||||
| Accession | Primary (citable) accession number: P38081 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | FPAP (Fungal Proteome Annotation Project) | ||||||||
Relevant documents
| Glycosyl hydrolases Classification of glycosyl hydrolase families and list of entries |
| SIMILARITY comments Index of protein domains and families |
| Yeast Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD |
| Yeast chromosome II Yeast (Saccharomyces cerevisiae) chromosome II: entries and gene names |

Clusters with


