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Protein

Uncharacterized glycosyl hydrolase YBR056W

Gene

YBR056W

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei236 – 2361Proton donorBy similarity
Active sitei333 – 3331NucleophileBy similarity

GO - Molecular functioni

  1. hydrolase activity, acting on glycosyl bonds Source: UniProtKB-KW

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Glycosidase, Hydrolase

Enzyme and pathway databases

BioCyciYEAST:G3O-29027-MONOMER.

Protein family/group databases

CAZyiGH5. Glycoside Hydrolase Family 5.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized glycosyl hydrolase YBR056W (EC:3.2.1.-)
Gene namesi
Ordered Locus Names:YBR056W
ORF Names:YBR0510
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311 Componenti: Chromosome II

Organism-specific databases

CYGDiYBR056w.
SGDiS000000260. YBR056W.

Subcellular locationi

GO - Cellular componenti

  1. mitochondrial intermembrane space Source: SGD
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 501501Uncharacterized glycosyl hydrolase YBR056WPRO_0000184055Add
BLAST

Proteomic databases

MaxQBiP38081.
PaxDbiP38081.
PeptideAtlasiP38081.

Expressioni

Gene expression databases

GenevestigatoriP38081.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
RSP5P399403EBI-21453,EBI-16219

Protein-protein interaction databases

BioGridi32758. 40 interactions.
DIPiDIP-5444N.
IntActiP38081. 10 interactions.
MINTiMINT-518368.
STRINGi4932.YBR056W.

Structurei

3D structure databases

ProteinModelPortaliP38081.
SMRiP38081. Positions 48-401.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG2730.
HOGENOMiHOG000248490.
InParanoidiP38081.
OrthoDBiEOG773XR3.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

P38081-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIGSLRNKFE HFKVSEKGGQ NLSTTLPKLP PAKDLDRSTI YKYRYNYGVN
60 70 80 90 100
LGALFVLEPW IFSKETICTI DGKEYDSEFD AISQQLKKHS SEDVAKMLSD
110 120 130 140 150
HYKKYIDRID WEWLSKDAHI TALRIPIGYW HVEDGKHLDS LPFAPLRKVY
160 170 180 190 200
ELAKPWEKLG ELINNAKKMS IGVLIDLHGL PGGANCDSHS GSKSGEAAFF
210 220 230 240 250
HKEKYMTKVY KDILPAIINT MTLGNENIIG IQVVNEACFD NNPKGQKFYY
260 270 280 290 300
SEAINTVEKL QPGLPVIISD GWWPQQWADW VKEKHFSEIV VIDSHVYRCF
310 320 330 340 350
SDSDKSKDAN SIIKDLPNTV NFPHEDADYT VGEFSGVLDG QTWNKTSGDR
360 370 380 390 400
DAIVQKYVQT QADVFSHVAS WGWFFWTLQF EYGDGGEWGL APMMQKGNLP
410 420 430 440 450
KRPHGDDLQV DKKKIDSIIH EHEAYWNGKG KNFEHWRFED GIKTAVDDII
460 470 480 490 500
AFRKFDNSLI GRWHSWKSQR RAEYVSAKKD SEFMWEWDQG YQRGLDEFNK

Y
Length:501
Mass (Da):57,822
Last modified:October 1, 1994 - v1
Checksum:i5133A161736ADDD3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z35925 Genomic DNA. Translation: CAA84999.1.
Z46260 Genomic DNA. Translation: CAA86399.1.
BK006936 Genomic DNA. Translation: DAA07175.1.
PIRiS45914.
RefSeqiNP_009612.1. NM_001178404.1.

Genome annotation databases

EnsemblFungiiYBR056W; YBR056W; YBR056W.
GeneIDi852346.
KEGGisce:YBR056W.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z35925 Genomic DNA. Translation: CAA84999.1.
Z46260 Genomic DNA. Translation: CAA86399.1.
BK006936 Genomic DNA. Translation: DAA07175.1.
PIRiS45914.
RefSeqiNP_009612.1. NM_001178404.1.

3D structure databases

ProteinModelPortaliP38081.
SMRiP38081. Positions 48-401.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi32758. 40 interactions.
DIPiDIP-5444N.
IntActiP38081. 10 interactions.
MINTiMINT-518368.
STRINGi4932.YBR056W.

Protein family/group databases

CAZyiGH5. Glycoside Hydrolase Family 5.

Proteomic databases

MaxQBiP38081.
PaxDbiP38081.
PeptideAtlasiP38081.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYBR056W; YBR056W; YBR056W.
GeneIDi852346.
KEGGisce:YBR056W.

Organism-specific databases

CYGDiYBR056w.
SGDiS000000260. YBR056W.

Phylogenomic databases

eggNOGiCOG2730.
HOGENOMiHOG000248490.
InParanoidiP38081.
OrthoDBiEOG773XR3.

Enzyme and pathway databases

BioCyciYEAST:G3O-29027-MONOMER.

Miscellaneous databases

NextBioi971087.

Gene expression databases

GenevestigatoriP38081.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of 24 kb on chromosome II of Saccharomyces cerevisiae."
    Aljinovic G., Pohl T.M.
    Yeast 11:475-479(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  2. "Complete DNA sequence of yeast chromosome II."
    Feldmann H., Aigle M., Aljinovic G., Andre B., Baclet M.C., Barthe C., Baur A., Becam A.-M., Biteau N., Boles E., Brandt T., Brendel M., Brueckner M., Bussereau F., Christiansen C., Contreras R., Crouzet M., Cziepluch C.
    , Demolis N., Delaveau T., Doignon F., Domdey H., Duesterhus S., Dubois E., Dujon B., El Bakkoury M., Entian K.-D., Feuermann M., Fiers W., Fobo G.M., Fritz C., Gassenhuber J., Glansdorff N., Goffeau A., Grivell L.A., de Haan M., Hein C., Herbert C.J., Hollenberg C.P., Holmstroem K., Jacq C., Jacquet M., Jauniaux J.-C., Jonniaux J.-L., Kallesoee T., Kiesau P., Kirchrath L., Koetter P., Korol S., Liebl S., Logghe M., Lohan A.J.E., Louis E.J., Li Z.Y., Maat M.J., Mallet L., Mannhaupt G., Messenguy F., Miosga T., Molemans F., Mueller S., Nasr F., Obermaier B., Perea J., Pierard A., Piravandi E., Pohl F.M., Pohl T.M., Potier S., Proft M., Purnelle B., Ramezani Rad M., Rieger M., Rose M., Schaaff-Gerstenschlaeger I., Scherens B., Schwarzlose C., Skala J., Slonimski P.P., Smits P.H.M., Souciet J.-L., Steensma H.Y., Stucka R., Urrestarazu L.A., van der Aart Q.J.M., Van Dyck L., Vassarotti A., Vetter I., Vierendeels F., Vissers S., Wagner G., de Wergifosse P., Wolfe K.H., Zagulski M., Zimmermann F.K., Mewes H.-W., Kleine K.
    EMBO J. 13:5795-5809(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  3. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  4. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiYBQ6_YEAST
AccessioniPrimary (citable) accession number: P38081
Secondary accession number(s): D6VQ55
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: October 1, 1994
Last modified: January 7, 2015
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 1960 molecules/cell in log phase SD medium.1 Publication

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families
  3. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  4. Yeast chromosome II
    Yeast (Saccharomyces cerevisiae) chromosome II: entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.