Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Inner membrane metabolite transport protein YdjE

Gene

ydjE

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciEcoCyc:YDJE-MONOMER.
ECOL316407:JW1758-MONOMER.

Protein family/group databases

TCDBi2.A.1.1.92. the major facilitator superfamily (mfs).

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane metabolite transport protein YdjE
Gene namesi
Name:ydjE
Ordered Locus Names:b1769, JW1758
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12369. ydjE.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 2020CytoplasmicSequence analysisAdd
BLAST
Transmembranei21 – 4323Helical; Name=1Sequence analysisAdd
BLAST
Topological domaini44 – 5714PeriplasmicSequence analysisAdd
BLAST
Transmembranei58 – 8023Helical; Name=2Sequence analysisAdd
BLAST
Topological domaini81 – 9111CytoplasmicSequence analysisAdd
BLAST
Transmembranei92 – 11423Helical; Name=3Sequence analysisAdd
BLAST
Topological domaini115 – 1173PeriplasmicSequence analysis
Transmembranei118 – 14023Helical; Name=4Sequence analysisAdd
BLAST
Topological domaini141 – 15212CytoplasmicSequence analysisAdd
BLAST
Transmembranei153 – 17523Helical; Name=5Sequence analysisAdd
BLAST
Topological domaini176 – 1783PeriplasmicSequence analysis
Transmembranei179 – 19820Helical; Name=6Sequence analysisAdd
BLAST
Topological domaini199 – 26567CytoplasmicSequence analysisAdd
BLAST
Transmembranei266 – 28823Helical; Name=7Sequence analysisAdd
BLAST
Topological domaini289 – 2979PeriplasmicSequence analysis
Transmembranei298 – 32023Helical; Name=8Sequence analysisAdd
BLAST
Topological domaini321 – 3266CytoplasmicSequence analysis
Transmembranei327 – 34418Helical; Name=9Sequence analysisAdd
BLAST
Topological domaini345 – 3539PeriplasmicSequence analysis
Transmembranei354 – 37623Helical; Name=10Sequence analysisAdd
BLAST
Topological domaini377 – 38812CytoplasmicSequence analysisAdd
BLAST
Transmembranei389 – 41123Helical; Name=11Sequence analysisAdd
BLAST
Topological domaini412 – 4154PeriplasmicSequence analysis
Transmembranei416 – 43823Helical; Name=12Sequence analysisAdd
BLAST
Topological domaini439 – 45214CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: GO_Central
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 452452Inner membrane metabolite transport protein YdjEPRO_0000050484Add
BLAST

Proteomic databases

PaxDbiP38055.

Interactioni

Protein-protein interaction databases

BioGridi4259142. 243 interactions.
STRINGi511145.b1769.

Structurei

3D structure databases

ProteinModelPortaliP38055.
SMRiP38055. Positions 55-441.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4108KUU. Bacteria.
ENOG410XQKC. LUCA.
HOGENOMiHOG000114540.
InParanoidiP38055.
KOiK08369.
OMAiVINGTFW.
OrthoDBiEOG6091DB.
PhylomeDBiP38055.

Family and domain databases

InterProiIPR020846. MFS_dom.
IPR005828. MFS_sugar_transport_like.
[Graphical view]
PfamiPF00083. Sugar_tr. 1 hit.
[Graphical view]
SUPFAMiSSF103473. SSF103473. 1 hit.
PROSITEiPS50850. MFS. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P38055-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEQYDQIGAR LDRLPLARFH YRIFGIISFS LLLTGFLSYS GNVVLAKLVS
60 70 80 90 100
NGWSNNFLNA AFTSALMFGY FIGSLTGGFI GDYFGRRRAF RINLLIVGIA
110 120 130 140 150
ATGAAFVPDM YWLIFFRFLM GTGMGALIMV GYASFTEFIP ATVRGKWSAR
160 170 180 190 200
LSFVGNWSPM LSAAIGVVVI AFFSWRIMFL LGGIGILLAW FLSGKYFIES
210 220 230 240 250
PRWLAGKGQI AGAECQLREV EQQIEREKSI RLPPLTSYQS NSKVKVIKGT
260 270 280 290 300
FWLLFKGEML RRTLVAITVL IAMNISLYTI TVWIPTIFVN SGIDVDKSIL
310 320 330 340 350
MTAVIMIGAP VGIFIAALII DHFPRRLFGS TLLIIIAVLG YIYSIQTTEW
360 370 380 390 400
AILIYGLVMI FFLYMYVCFA SAVYIPELWP THLRLRGSGF VNAVGRIVAV
410 420 430 440 450
FTPYGVAALL THYGSITVFM VLGVMLLLCA LVLSIFGIET RKVSLEEISE

VN
Length:452
Mass (Da):50,318
Last modified:November 1, 1997 - v2
Checksum:i5A596DEA229205C2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74839.1.
AP009048 Genomic DNA. Translation: BAA15560.1.
M26934 Genomic DNA. No translation available.
PIRiA64937.
RefSeqiNP_416283.1. NC_000913.3.
WP_000438807.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74839; AAC74839; b1769.
BAA15560; BAA15560; BAA15560.
GeneIDi946274.
KEGGiecj:JW1758.
eco:b1769.
PATRICi32118849. VBIEscCol129921_1842.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74839.1.
AP009048 Genomic DNA. Translation: BAA15560.1.
M26934 Genomic DNA. No translation available.
PIRiA64937.
RefSeqiNP_416283.1. NC_000913.3.
WP_000438807.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP38055.
SMRiP38055. Positions 55-441.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259142. 243 interactions.
STRINGi511145.b1769.

Protein family/group databases

TCDBi2.A.1.1.92. the major facilitator superfamily (mfs).

Proteomic databases

PaxDbiP38055.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74839; AAC74839; b1769.
BAA15560; BAA15560; BAA15560.
GeneIDi946274.
KEGGiecj:JW1758.
eco:b1769.
PATRICi32118849. VBIEscCol129921_1842.

Organism-specific databases

EchoBASEiEB2272.
EcoGeneiEG12369. ydjE.

Phylogenomic databases

eggNOGiENOG4108KUU. Bacteria.
ENOG410XQKC. LUCA.
HOGENOMiHOG000114540.
InParanoidiP38055.
KOiK08369.
OMAiVINGTFW.
OrthoDBiEOG6091DB.
PhylomeDBiP38055.

Enzyme and pathway databases

BioCyciEcoCyc:YDJE-MONOMER.
ECOL316407:JW1758-MONOMER.

Miscellaneous databases

PROiP38055.

Family and domain databases

InterProiIPR020846. MFS_dom.
IPR005828. MFS_sugar_transport_like.
[Graphical view]
PfamiPF00083. Sugar_tr. 1 hit.
[Graphical view]
SUPFAMiSSF103473. SSF103473. 1 hit.
PROSITEiPS50850. MFS. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Structure and expression in Escherichia coli K-12 of the L-asparaginase I-encoding ansA gene and its flanking regions."
    Jerlstroem P.G., Bezjak D.A., Jennings M.P., Beacham I.R.
    Gene 78:37-46(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 360-452.
    Strain: K12.
  5. "Intrinsic and extrinsic approaches for detecting genes in a bacterial genome."
    Borodovsky M., Rudd K.E., Koonin E.V.
    Nucleic Acids Res. 22:4756-4767(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION.
  6. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYDJE_ECOLI
AccessioniPrimary (citable) accession number: P38055
Secondary accession number(s): P77244
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: November 1, 1997
Last modified: February 17, 2016
This is version 120 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.