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Protein

Uncharacterized fimbrial-like protein YbgD

Gene

ybgD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG12359-MONOMER.
ECOL316407:JW0709-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized fimbrial-like protein YbgD
Gene namesi
Name:ybgD
Ordered Locus Names:b0719, JW0709
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12359. ybgD.

Subcellular locationi

GO - Cellular componenti

  • pilus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Fimbrium

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2323Sequence analysisAdd
BLAST
Chaini24 – 188165Uncharacterized fimbrial-like protein YbgDPRO_0000009255Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi42 ↔ 81Sequence analysis

Keywords - PTMi

Disulfide bond

Proteomic databases

PaxDbiP37909.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
insO1P756802EBI-1119998,EBI-9152908

Protein-protein interaction databases

BioGridi4259940. 9 interactions.
IntActiP37909. 26 interactions.
STRINGi511145.b0719.

Structurei

3D structure databases

ProteinModelPortaliP37909.
SMRiP37909. Positions 29-188.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the fimbrial protein family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4106UBK. Bacteria.
ENOG410YS65. LUCA.
HOGENOMiHOG000260127.
InParanoidiP37909.
OMAiDINLENC.
OrthoDBiEOG6GR38K.
PhylomeDBiP37909.

Family and domain databases

Gene3Di2.60.40.1090. 1 hit.
InterProiIPR008966. Adhesion_dom.
IPR000259. Adhesion_dom_fimbrial.
[Graphical view]
PfamiPF00419. Fimbrial. 1 hit.
[Graphical view]
SUPFAMiSSF49401. SSF49401. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P37909-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFKGQKTLAA LAVSLLFTAP VYAADEGSGE IHFKGEVIEA PCEIHPEDID
60 70 80 90 100
KNIDLGQVTT THINREHHSN KVAVDIRLIN CDLPASDNGS GMPVSKVGVT
110 120 130 140 150
FDSTAKTTGA TPLLSNTSAG EATGVGVRLM DKNDGNIVLG SAAPDLDLDA
160 170 180
SSSEQTLNFF AWMEQIDNAV DVTAGEVTAN ATYVLDYK
Length:188
Mass (Da):19,838
Last modified:November 1, 1997 - v2
Checksum:iDC18B18CD73B4EC0
GO

Sequence cautioni

The sequence J01619 differs from that shown. Reason: Frameshift at position 98. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J01619 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC73813.1.
AP009048 Genomic DNA. Translation: BAA35383.1.
PIRiF64807.
RefSeqiNP_415247.1. NC_000913.3.
WP_000472412.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73813; AAC73813; b0719.
BAA35383; BAA35383; BAA35383.
GeneIDi945325.
KEGGiecj:JW0709.
eco:b0719.
PATRICi32116633. VBIEscCol129921_0749.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J01619 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC73813.1.
AP009048 Genomic DNA. Translation: BAA35383.1.
PIRiF64807.
RefSeqiNP_415247.1. NC_000913.3.
WP_000472412.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP37909.
SMRiP37909. Positions 29-188.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259940. 9 interactions.
IntActiP37909. 26 interactions.
STRINGi511145.b0719.

Proteomic databases

PaxDbiP37909.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73813; AAC73813; b0719.
BAA35383; BAA35383; BAA35383.
GeneIDi945325.
KEGGiecj:JW0709.
eco:b0719.
PATRICi32116633. VBIEscCol129921_0749.

Organism-specific databases

EchoBASEiEB2262.
EcoGeneiEG12359. ybgD.

Phylogenomic databases

eggNOGiENOG4106UBK. Bacteria.
ENOG410YS65. LUCA.
HOGENOMiHOG000260127.
InParanoidiP37909.
OMAiDINLENC.
OrthoDBiEOG6GR38K.
PhylomeDBiP37909.

Enzyme and pathway databases

BioCyciEcoCyc:EG12359-MONOMER.
ECOL316407:JW0709-MONOMER.

Miscellaneous databases

PROiP37909.

Family and domain databases

Gene3Di2.60.40.1090. 1 hit.
InterProiIPR008966. Adhesion_dom.
IPR000259. Adhesion_dom_fimbrial.
[Graphical view]
PfamiPF00419. Fimbrial. 1 hit.
[Graphical view]
SUPFAMiSSF49401. SSF49401. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete sequence of the gltA gene encoding citrate synthase in Escherichia coli."
    Ner S.S., Bhayana V., Bell A.W., Giles I.G., Duckworth H.W., Bloxham D.P.
    Biochemistry 22:5243-5249(1983)
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. "Intrinsic and extrinsic approaches for detecting genes in a bacterial genome."
    Borodovsky M., Rudd K.E., Koonin E.V.
    Nucleic Acids Res. 22:4756-4767(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiYBGD_ECOLI
AccessioniPrimary (citable) accession number: P37909
Secondary accession number(s): P75751
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: November 1, 1997
Last modified: January 20, 2016
This is version 114 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.