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Protein

Uncharacterized isomerase YddE

Gene

yddE

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei46By similarity1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Isomerase

Enzyme and pathway databases

BioCyciEcoCyc:EG11825-MONOMER.
ECOL316407:JW1459-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized isomerase YddE (EC:5.1.-.-)
Alternative name(s):
ORFB
Gene namesi
Name:yddE
Ordered Locus Names:b1464, JW1459
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11825. yddE.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001623881 – 297Uncharacterized isomerase YddEAdd BLAST297

Proteomic databases

PaxDbiP37757.
PRIDEiP37757.

Interactioni

Subunit structurei

Homodimer and homotetramer.1 Publication

Protein-protein interaction databases

BioGridi4262893. 18 interactors.
IntActiP37757. 5 interactors.
STRINGi511145.b1464.

Structurei

Secondary structure

1297
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi4 – 10Combined sources7
Beta strandi18 – 25Combined sources8
Helixi32 – 42Combined sources11
Beta strandi47 – 51Combined sources5
Beta strandi54 – 63Combined sources10
Beta strandi65 – 69Combined sources5
Helixi75 – 87Combined sources13
Beta strandi91 – 97Combined sources7
Beta strandi103 – 110Combined sources8
Beta strandi113 – 119Combined sources7
Helixi132 – 140Combined sources9
Helixi145 – 147Combined sources3
Beta strandi154 – 161Combined sources8
Beta strandi163 – 168Combined sources6
Helixi174 – 176Combined sources3
Helixi181 – 191Combined sources11
Beta strandi196 – 201Combined sources6
Beta strandi205 – 210Combined sources6
Beta strandi212 – 214Combined sources3
Helixi215 – 217Combined sources3
Beta strandi219 – 224Combined sources6
Helixi226 – 238Combined sources13
Beta strandi246 – 255Combined sources10
Helixi257 – 259Combined sources3
Beta strandi263 – 272Combined sources10
Beta strandi275 – 283Combined sources9
Beta strandi285 – 292Combined sources8

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1QY9X-ray2.05A/B/C/D1-297[»]
1QYAX-ray2.00A/B2-297[»]
1SDJX-ray2.30A1-297[»]
ProteinModelPortaliP37757.
SMRiP37757.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP37757.

Family & Domainsi

Sequence similaritiesi

Belongs to the PhzF family.Curated

Phylogenomic databases

eggNOGiENOG4105JAB. Bacteria.
COG0384. LUCA.
HOGENOMiHOG000251509.
InParanoidiP37757.
OMAiEQGHYVD.
PhylomeDBiP37757.

Family and domain databases

InterProiIPR003719. Phenazine_PhzF.
[Graphical view]
PfamiPF02567. PhzC-PhzF. 1 hit.
[Graphical view]
PIRSFiPIRSF016184. PhzC_PhzF. 1 hit.
TIGRFAMsiTIGR00654. PhzF_family. 1 hit.

Sequencei

Sequence statusi: Complete.

P37757-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKPQVYHVDA FTSQPFRGNS AGVVFPADNL SEAQMQLIAR ELGHSETAFL
60 70 80 90 100
LHSDDSDVRI RYFTPTVEVP ICGHATVAAH YVRAKVLGLG NCTIWQTSLA
110 120 130 140 150
GKHRVTIEKH NDDYRISLEQ GTPGFEPPLE GETRAAIINA LHLTEDDILP
160 170 180 190 200
GLPIQVATTG HSKVMIPLKP EVDIDALSPD LNALTAISKK IGCNGFFPFQ
210 220 230 240 250
IRPGKNETDG RMFSPAIGIV EDPVTGNANG PMGAWLVHHN VLPHDGNVLR
260 270 280 290
VKGHQGRALG RDGMIEVTVT IRDNQPEKVT ISGTAVILFH AEWAIEL
Length:297
Mass (Da):32,319
Last modified:November 1, 1997 - v2
Checksum:iFB7B2EE8ABDC266E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74546.1.
AP009048 Genomic DNA. Translation: BAA15101.1.
X17110 Genomic DNA. No translation available.
PIRiC64899.
RefSeqiNP_415981.1. NC_000913.3.
WP_000804385.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74546; AAC74546; b1464.
BAA15101; BAA15101; BAA15101.
GeneIDi944782.
KEGGiecj:JW1459.
eco:b1464.
PATRICi32118220. VBIEscCol129921_1530.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74546.1.
AP009048 Genomic DNA. Translation: BAA15101.1.
X17110 Genomic DNA. No translation available.
PIRiC64899.
RefSeqiNP_415981.1. NC_000913.3.
WP_000804385.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1QY9X-ray2.05A/B/C/D1-297[»]
1QYAX-ray2.00A/B2-297[»]
1SDJX-ray2.30A1-297[»]
ProteinModelPortaliP37757.
SMRiP37757.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262893. 18 interactors.
IntActiP37757. 5 interactors.
STRINGi511145.b1464.

Proteomic databases

PaxDbiP37757.
PRIDEiP37757.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74546; AAC74546; b1464.
BAA15101; BAA15101; BAA15101.
GeneIDi944782.
KEGGiecj:JW1459.
eco:b1464.
PATRICi32118220. VBIEscCol129921_1530.

Organism-specific databases

EchoBASEiEB1772.
EcoGeneiEG11825. yddE.

Phylogenomic databases

eggNOGiENOG4105JAB. Bacteria.
COG0384. LUCA.
HOGENOMiHOG000251509.
InParanoidiP37757.
OMAiEQGHYVD.
PhylomeDBiP37757.

Enzyme and pathway databases

BioCyciEcoCyc:EG11825-MONOMER.
ECOL316407:JW1459-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP37757.
PROiP37757.

Family and domain databases

InterProiIPR003719. Phenazine_PhzF.
[Graphical view]
PfamiPF02567. PhzC-PhzF. 1 hit.
[Graphical view]
PIRSFiPIRSF016184. PhzC_PhzF. 1 hit.
TIGRFAMsiTIGR00654. PhzF_family. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYDDE_ECOLI
AccessioniPrimary (citable) accession number: P37757
Secondary accession number(s): P77430
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: November 1, 1997
Last modified: November 2, 2016
This is version 118 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.