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Protein

Uncharacterized HTH-type transcriptional regulator YhjC

Gene

yhjC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi19 – 38H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

  • transcription, DNA-templated Source: EcoCyc

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:EG12247-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YhjC
Gene namesi
Name:yhjC
Ordered Locus Names:b3521, JW3489
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12247 yhjC

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001057991 – 299Uncharacterized HTH-type transcriptional regulator YhjCAdd BLAST299

Proteomic databases

PaxDbiP37641
PRIDEiP37641

Interactioni

Protein-protein interaction databases

BioGridi4262157, 11 interactors
DIPiDIP-12378N
IntActiP37641, 2 interactors
STRINGi316385.ECDH10B_3698

Structurei

3D structure databases

ProteinModelPortaliP37641
SMRiP37641
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 59HTH lysR-typePROSITE-ProRule annotationAdd BLAST59

Phylogenomic databases

eggNOGiENOG4105CBN Bacteria
ENOG410XNVB LUCA
HOGENOMiHOG000233519
InParanoidiP37641
OMAiHALIHYA
PhylomeDBiP37641

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR005119 LysR_subst-bd
IPR000847 Tscrpt_reg_HTH_LysR
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF00126 HTH_1, 1 hit
PF03466 LysR_substrate, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS50931 HTH_LYSR, 1 hit

Sequencei

Sequence statusi: Complete.

P37641-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDKIHAMQLF IKVAELESFS RAADFFALPK GSVSRQIQAL EHQLGTQLLQ
60 70 80 90 100
RTTRRVKLTP EGMTYYQRAK DVLSNLSELD GLFQQDATSI SGKLRIDIPP
110 120 130 140 150
GIAKSLLLPR LSEFLYLHPG IELELSSHDR PVDILHDGFD CVIRTGALPE
160 170 180 190 200
DGVIARPLGK LTMVNCASPH YLTRFGYPQS PDDLTSHAIV RYTPHLGVHP
210 220 230 240 250
LGFEVASVNG VQWFKSGGML TVNSSENYLT AGLAGLGIIQ IPRIAVREAL
260 270 280 290
RAGRLIEVLP GYRAEPLSLS LVYPQRRELS RRVNLFMQWL AGVMKEYLD
Length:299
Mass (Da):33,330
Last modified:December 15, 1998 - v2
Checksum:i22D0EC5994CBC8C1
GO

Sequence cautioni

The sequence AAB18497 differs from that shown. Reason: Erroneous initiation.Curated
The sequence BAE77773 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00039 Genomic DNA Translation: AAB18497.1 Different initiation.
U00096 Genomic DNA Translation: AAC76546.2
AP009048 Genomic DNA Translation: BAE77773.1 Different initiation.
PIRiS47741
RefSeqiNP_417978.2, NC_000913.3
WP_000357790.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC76546; AAC76546; b3521
BAE77773; BAE77773; BAE77773
GeneIDi948035
KEGGiecj:JW3489
eco:b3521
PATRICifig|511145.12.peg.3630

Similar proteinsi

Entry informationi

Entry nameiYHJC_ECOLI
AccessioniPrimary (citable) accession number: P37641
Secondary accession number(s): Q2M7I3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: December 15, 1998
Last modified: March 28, 2018
This is version 122 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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