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Protein

Putative HTH-type transcriptional regulator YhjB

Gene

yhjB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi159 – 17820H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

  • regulation of transcription, DNA-templated Source: UniProtKB-KW
  • transcription, DNA-templated Source: EcoCyc
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:EG12246-MONOMER.
ECOL316407:JW3488-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative HTH-type transcriptional regulator YhjB
Gene namesi
Name:yhjB
Ordered Locus Names:b3520, JW3488
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12246. yhjB.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 200200Putative HTH-type transcriptional regulator YhjBPRO_0000184198Add
BLAST

Proteomic databases

PaxDbiP37640.
PRIDEiP37640.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
groLP0A6F53EBI-542016,EBI-543750

Protein-protein interaction databases

BioGridi4262526. 3 interactions.
DIPiDIP-12377N.
IntActiP37640. 9 interactions.
MINTiMINT-1305907.
STRINGi511145.b3520.

Structurei

3D structure databases

ProteinModelPortaliP37640.
SMRiP37640. Positions 1-199.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini135 – 20066HTH luxR-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH luxR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4106S2D. Bacteria.
ENOG4111IKU. LUCA.
HOGENOMiHOG000125881.
OMAiHEMMQFN.
OrthoDBiEOG69GZGV.
PhylomeDBiP37640.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR016032. Sig_transdc_resp-reg_C-effctor.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00196. GerE. 1 hit.
[Graphical view]
PRINTSiPR00038. HTHLUXR.
SMARTiSM00421. HTH_LUXR. 1 hit.
[Graphical view]
SUPFAMiSSF46894. SSF46894. 1 hit.
PROSITEiPS00622. HTH_LUXR_1. 1 hit.
PS50043. HTH_LUXR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P37640-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQIVMFDRQS IFIHGMKISL QQRIPGVSIQ GASQADELWQ KLESYPEALV
60 70 80 90 100
MLDGDQDGEF CYWLLQKTVV QFPEVKVLIT ATDCNKRWLQ EVIHFNVLAI
110 120 130 140 150
VPRDSTVETF ALAVNSAAMG MMFLPGDWRT TPEKDIKDLK SLSARQREIL
160 170 180 190 200
TMLAAGESNK EIGRALNIST GTVKAHLESL YRRLEVKNRT QAAMMLNISS
Length:200
Mass (Da):22,604
Last modified:October 1, 1994 - v1
Checksum:iD238AB59FE6ED109
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00039 Genomic DNA. Translation: AAB18496.1.
U00096 Genomic DNA. Translation: AAC76545.1.
AP009048 Genomic DNA. Translation: BAE77774.1.
PIRiS47740.
RefSeqiNP_417977.1. NC_000913.3.
WP_001167676.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76545; AAC76545; b3520.
BAE77774; BAE77774; BAE77774.
GeneIDi948036.
KEGGiecj:JW3488.
eco:b3520.
PATRICi32122502. VBIEscCol129921_3629.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00039 Genomic DNA. Translation: AAB18496.1.
U00096 Genomic DNA. Translation: AAC76545.1.
AP009048 Genomic DNA. Translation: BAE77774.1.
PIRiS47740.
RefSeqiNP_417977.1. NC_000913.3.
WP_001167676.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP37640.
SMRiP37640. Positions 1-199.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262526. 3 interactions.
DIPiDIP-12377N.
IntActiP37640. 9 interactions.
MINTiMINT-1305907.
STRINGi511145.b3520.

Proteomic databases

PaxDbiP37640.
PRIDEiP37640.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76545; AAC76545; b3520.
BAE77774; BAE77774; BAE77774.
GeneIDi948036.
KEGGiecj:JW3488.
eco:b3520.
PATRICi32122502. VBIEscCol129921_3629.

Organism-specific databases

EchoBASEiEB2157.
EcoGeneiEG12246. yhjB.

Phylogenomic databases

eggNOGiENOG4106S2D. Bacteria.
ENOG4111IKU. LUCA.
HOGENOMiHOG000125881.
OMAiHEMMQFN.
OrthoDBiEOG69GZGV.
PhylomeDBiP37640.

Enzyme and pathway databases

BioCyciEcoCyc:EG12246-MONOMER.
ECOL316407:JW3488-MONOMER.

Miscellaneous databases

PROiP37640.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR016032. Sig_transdc_resp-reg_C-effctor.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00196. GerE. 1 hit.
[Graphical view]
PRINTSiPR00038. HTHLUXR.
SMARTiSM00421. HTH_LUXR. 1 hit.
[Graphical view]
SUPFAMiSSF46894. SSF46894. 1 hit.
PROSITEiPS00622. HTH_LUXR_1. 1 hit.
PS50043. HTH_LUXR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes."
    Sofia H.J., Burland V., Daniels D.L., Plunkett G. III, Blattner F.R.
    Nucleic Acids Res. 22:2576-2586(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYHJB_ECOLI
AccessioniPrimary (citable) accession number: P37640
Secondary accession number(s): Q2M7I2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: October 1, 1994
Last modified: January 20, 2016
This is version 123 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.