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Protein

Putative HTH-type transcriptional regulator YhjB

Gene

yhjB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi159 – 178H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

  • regulation of transcription, DNA-templated Source: UniProtKB-KW
  • transcription, DNA-templated Source: EcoCyc

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:EG12246-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Putative HTH-type transcriptional regulator YhjB
Gene namesi
Name:yhjB
Ordered Locus Names:b3520, JW3488
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12246 yhjB

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001841981 – 200Putative HTH-type transcriptional regulator YhjBAdd BLAST200

Proteomic databases

PaxDbiP37640
PRIDEiP37640

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
groLP0A6F53EBI-542016,EBI-543750

Protein-protein interaction databases

BioGridi4262526, 3 interactors
DIPiDIP-12377N
IntActiP37640, 9 interactors
STRINGi316385.ECDH10B_3697

Structurei

3D structure databases

ProteinModelPortaliP37640
SMRiP37640
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini135 – 200HTH luxR-typePROSITE-ProRule annotationAdd BLAST66

Phylogenomic databases

eggNOGiENOG4106S2D Bacteria
ENOG4111IKU LUCA
HOGENOMiHOG000125881
OMAiFIDTHYT
PhylomeDBiP37640

Family and domain databases

CDDicd06170 LuxR_C_like, 1 hit
InterProiView protein in InterPro
IPR016032 Sig_transdc_resp-reg_C-effctor
IPR000792 Tscrpt_reg_LuxR_C
PfamiView protein in Pfam
PF00196 GerE, 1 hit
PRINTSiPR00038 HTHLUXR
SMARTiView protein in SMART
SM00421 HTH_LUXR, 1 hit
SUPFAMiSSF46894 SSF46894, 1 hit
PROSITEiView protein in PROSITE
PS00622 HTH_LUXR_1, 1 hit
PS50043 HTH_LUXR_2, 1 hit

Sequencei

Sequence statusi: Complete.

P37640-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQIVMFDRQS IFIHGMKISL QQRIPGVSIQ GASQADELWQ KLESYPEALV
60 70 80 90 100
MLDGDQDGEF CYWLLQKTVV QFPEVKVLIT ATDCNKRWLQ EVIHFNVLAI
110 120 130 140 150
VPRDSTVETF ALAVNSAAMG MMFLPGDWRT TPEKDIKDLK SLSARQREIL
160 170 180 190 200
TMLAAGESNK EIGRALNIST GTVKAHLESL YRRLEVKNRT QAAMMLNISS
Length:200
Mass (Da):22,604
Last modified:October 1, 1994 - v1
Checksum:iD238AB59FE6ED109
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00039 Genomic DNA Translation: AAB18496.1
U00096 Genomic DNA Translation: AAC76545.1
AP009048 Genomic DNA Translation: BAE77774.1
PIRiS47740
RefSeqiNP_417977.1, NC_000913.3
WP_001167676.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC76545; AAC76545; b3520
BAE77774; BAE77774; BAE77774
GeneIDi948036
KEGGiecj:JW3488
eco:b3520
PATRICifig|1411691.4.peg.3198

Similar proteinsi

Entry informationi

Entry nameiYHJB_ECOLI
AccessioniPrimary (citable) accession number: P37640
Secondary accession number(s): Q2M7I2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: October 1, 1994
Last modified: March 28, 2018
This is version 132 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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