UPF0076 protein yabJ - Bacillus subtilis

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Reviewed, UniProtKB/Swiss-Prot P37552 (YABJ_BACSU)

Last modified December 15, 2009. Version 76. History...

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Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein names

Recommended name:
UPF0076 protein yabJ

Gene names

Name:	yabJ
Ordered Locus Names:	BSU00480

Organism

Bacillus subtilis [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Firmicutes › Bacillales › Bacillaceae › Bacillus

Protein attributes

Sequence length	125 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at protein level.

General annotation (Comments)

Subunit structure	Homotrimer.
Subcellular location	Cytoplasm.
Sequence similarities	Belongs to the UPF0076 (UK114) family.
Caution	Was originally (Ref.3) thought to have a role in the purine repressor-mediated regulation of purA or the pur operon. The effect of yabJ on regulation of purA was due to the orientation of the marker gene downstream of purR in the yabJ mutant strain used in Ref.3.

Ontologies

Keywords
Cellular component	Cytoplasm
Technical term	3D-structure Complete proteome
Gene Ontology (GO)
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Initiator methionine

1

Removed

Chain

124

UPF0076 protein yabJ

PRO_0000170330

Secondary structure

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125

Helix Strand Turn

Sequences

Sequence

Length

Mass (Da)

Tools

P37552-1 [UniParc].

Last modified January 23, 2007. Version 3.
Checksum: 93A9721B82ED3490
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125

13,654

        10         20         30         40         50         60 
MTKAVHTKHA PAAIGPYSQG IIVNNMFYSS GQIPLTPSGE MVNGDIKEQT HQVFSNLKAV 

        70         80         90        100        110        120 
LEEAGASFET VVKATVFIAD MEQFAEVNEV YGQYFDTHKP ARSCVEVARL PKDALVEIEV 


IALVK

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Systematic sequencing of the 180 kilobase region of the Bacillus subtilis chromosome containing the replication origin." Ogasawara N., Nakai S., Yoshikawa H. DNA Res. 1:1-14(1994) [PubMed: 7584024] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: 168.
[2]	"The complete genome sequence of the Gram-positive bacterium Bacillus subtilis." Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V. Danchin A. Nature 390:249-256(1997) [PubMed: 9384377] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 168.
[3]	"A role for a highly conserved protein of unknown function in regulation of Bacillus subtilis purA by the purine repressor." Rappu P., Shin B.S., Zalkin H., Maentsaelae P. J. Bacteriol. 181:3810-3815(1999) [PubMed: 10368157] [Abstract] Cited for: PRELIMINARY FUNCTIONAL ASSIGNMENT.
[4]	"In vivo effect of mutations at the PRPP binding site of the Bacillus subtilis purine repressor." Rappu P., Pullinen T., Mantsaelae P. J. Bacteriol. 185:6728-6731(2003) [PubMed: 14594850] [Abstract] Cited for: REVISION OF FUNCTION.
[5]	"Crystal structure of Bacillus subtilis YabJ, a purine regulatory protein and member of the highly conserved YjgF family." Sinha S., Rappu P., Lange S.C., Maentsaelae P., Zalkin H., Smith J.L. Proc. Natl. Acad. Sci. U.S.A. 96:13074-13079(1999) [PubMed: 10557275] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.7 ANGSTROMS).

Cross-references

Sequence databases

D26185 Genomic DNA. Translation: BAA05283.1.
AL009126 Genomic DNA. Translation: CAB11824.1.

PIR

RefSeq

3D structure databases

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1QD9	X-ray	1.70	A/B/C	2-125	[»]

ModBase

Genome annotation databases

GeneID

GenomeReviews

Gene locus BSU00480 in contig AL009126_GR.

KEGG

NMPDR

fig|224308.1.peg.48.

Organism-specific databases

SubtiList

BG10111. yabJ. [Micado]

CMR

Phylogenomic databases

HOGENOM

OMA

Family and domain databases

InterPro

IPR013813. Endoribo_LPSP/chorism_mut-like.
IPR006175. EndoRNase_L-PSP.
IPR006056. YjgF-like.
IPR019897. YjgF-like_CS.
[Graphical view]

Gene3D

G3DSA:3.30.1330.40. Endoribo_LPSP/chorism_mut-like. 1 hit.

PANTHER

PTHR11803. Endoribon_LPSP. 1 hit.

Pfam

PF01042. Ribonuc_L-PSP. 1 hit.
[Graphical view]

PROSITE

PS01094. UPF0076. 1 hit.
[Graphical view]

ProtoNet

Entry information

Entry name

YABJ_BACSU

Accession

Primary (citable) accession number: P37552

Entry history

Integrated into UniProtKB/Swiss-Prot:	October 1, 1994
Last sequence update:	January 23, 2007
Last modified:	December 15, 2009
This is version 76 of the entry and version 3 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

Bacillus subtilis

Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

Uncharacterized protein families (UPF)

List of uncharacterized protein family (UPF) entries

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents