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Reviewed, UniProtKB/Swiss-Prot P37545 (YABD_BACSU)

Last modified November 24, 2009. Version 63. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Uncharacterized deoxyribonuclease yabD
    EC=3.1.21.-
Gene names
Name: yabD
Ordered Locus Names: BSU00390
OrganismBacillus subtilis [Complete proteome] [HAMAP]
Taxonomic identifier1423 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacillalesBacillaceaeBacillus

Protein attributes

Sequence length255 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

General annotation (Comments)

Sequence similarities

Belongs to the tatD DNase family.

Ontologies

Keywords
   Molecular functionHydrolase
Nuclease
   Technical termComplete proteome
Gene Ontology (GO)
   Molecular functionendodeoxyribonuclease activity, producing 5'-phosphomonoesters

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 255255Uncharacterized deoxyribonuclease yabD
PRO_0000202001

Sequences

Sequence LengthMass (Da)Tools
P37545-1 [UniParc].

Last modified October 1, 1994. Version 1.
Checksum: ADF8EE9F5AEB0ED4

FASTA25529,232
        10         20         30         40         50         60 
MLFDTHAHLN AEQYDTDLEE VIERAKAEKV ERIVVVGFDR PTITRAMEMI EEYDFIYAAI 

        70         80         90        100        110        120 
GWHPVDAIDM TEEDLAWIKE LSAHEKVVAI GEMGLDYHWD KSPKDIQKEV FRNQIALAKE 

       130        140        150        160        170        180 
VNLPIIIHNR DATEDVVTIL KEEGAEAVGG IMHCFTGSAE VARECMKMNF YLSFGGPVTF 

       190        200        210        220        230        240 
KNAKKPKEVV KEIPNDRLLI ETDCPFLTPH PFRGKRNEPS YVKYVAEQIA ELKEMTFEEI 

       250 
ASITTENAKR LFRIN 

« Hide

References

« Hide 'large scale' references
[1]"Systematic sequencing of the 180 kilobase region of the Bacillus subtilis chromosome containing the replication origin."
Ogasawara N., Nakai S., Yoshikawa H.
DNA Res. 1:1-14(1994) [PubMed: 7584024] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: 168.
[2]"The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V. expand/collapse author list , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
Nature 390:249-256(1997) [PubMed: 9384377] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 168.

Cross-references

Sequence databases

D26185 Genomic DNA. Translation: BAA05274.1.
AL009126 Genomic DNA. Translation: CAB11815.1.
PIRS66068.
RefSeqNP_387920.1.

3D structure databases

ModBaseSearch...

Genome annotation databases

GeneID936949.
GenomeReviewsGene locus BSU00390 in contig AL009126_GR.
KEGGbsu:BSU00390.
NMPDRfig|224308.1.peg.39.

Organism-specific databases

SubtiListBG10102. yabD. [Micado]
CMRSearch...

Phylogenomic databases

HOGENOMP37545.
OMALPLVIHT

Family and domain databases

InterProIPR015992. DNase_TatD.
IPR001130. DNase_TatD-rel.
IPR018228. DNase_TatD-rel_CS.
IPR012278. DNase_TatD_Mg.
IPR015991. DNase_TatD_Mg_prok.
[Graphical view]
PANTHERPTHR10060. TatD_DNase. 1 hit.
PfamPF01026. TatD_DNase. 1 hit.
[Graphical view]
PIRSFPIRSF005902. DNase_TatD. 1 hit.
TIGRFAMsTIGR00010. TatD_DNase. 1 hit.
PROSITEPS01137. TATD_1. 1 hit.
PS01090. TATD_2. 1 hit.
PS01091. TATD_3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameYABD_BACSU
AccessionPrimary (citable) accession number: P37545
Entry history
Integrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: October 1, 1994
Last modified: November 24, 2009
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

Bacillus subtilis

Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents