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P37545 (YABD_BACSU) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 79. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Uncharacterized deoxyribonuclease YabD

EC=3.1.21.-
Gene names
Name:yabD
Ordered Locus Names:BSU00390
OrganismBacillus subtilis
Taxonomic identifier1423 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacillalesBacillaceaeBacillus

Protein attributes

Sequence length255 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Putative deoxyribonuclease By similarity.

Cofactor

Binds 2 divalent metal cations per subunit By similarity.

Sequence similarities

Belongs to the TatD DNase family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 255255Uncharacterized deoxyribonuclease YabD
PRO_0000202001

Sites

Metal binding61Divalent metal cation 1 By similarity
Metal binding81Divalent metal cation 1 By similarity
Metal binding921Divalent metal cation 1 By similarity
Metal binding921Divalent metal cation 2 By similarity
Metal binding1281Divalent metal cation 2 By similarity
Metal binding1531Divalent metal cation 2 By similarity
Metal binding2031Divalent metal cation 1 By similarity

Sequences

Sequence LengthMass (Da)Tools
P37545 [UniParc].

Last modified October 1, 1994. Version 1.
Checksum: ADF8EE9F5AEB0ED4

FASTA25529,232
        10         20         30         40         50         60 
MLFDTHAHLN AEQYDTDLEE VIERAKAEKV ERIVVVGFDR PTITRAMEMI EEYDFIYAAI 

        70         80         90        100        110        120 
GWHPVDAIDM TEEDLAWIKE LSAHEKVVAI GEMGLDYHWD KSPKDIQKEV FRNQIALAKE 

       130        140        150        160        170        180 
VNLPIIIHNR DATEDVVTIL KEEGAEAVGG IMHCFTGSAE VARECMKMNF YLSFGGPVTF 

       190        200        210        220        230        240 
KNAKKPKEVV KEIPNDRLLI ETDCPFLTPH PFRGKRNEPS YVKYVAEQIA ELKEMTFEEI 

       250 
ASITTENAKR LFRIN 

« Hide

References

« Hide 'large scale' references
[1]"Systematic sequencing of the 180 kilobase region of the Bacillus subtilis chromosome containing the replication origin."
Ogasawara N., Nakai S., Yoshikawa H.
DNA Res. 1:1-14(1994) [PubMed: 7584024] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: 168.
[2]"The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V. expand/collapse author list , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
Nature 390:249-256(1997) [PubMed: 9384377] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 168.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
D26185 Genomic DNA. Translation: BAA05274.1.
AL009126 Genomic DNA. Translation: CAB11815.1.
PIRS66068.
RefSeqNP_387920.1. NC_000964.3.

3D structure databases

ProteinModelPortalP37545.
SMRP37545. Positions 2-252.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaEBBACT00000003039; EBBACP00000003039; EBBACG00000003033.
GeneID936949.
GenomeReviewsGene locus BSU00390 in contig AL009126_GR.
KEGGbsu:BSU00390.
NMPDRfig|224308.1.peg.39.
PATRIC18971549. VBIBacSub10457_0040.

Organism-specific databases

GenoListBSU00390.

Phylogenomic databases

GeneTreeEBGT00050000002835.
HOGENOMHBG629833.
OMALPLVIHT.
PhylomeDBP37545.
ProtClustDBCLSK872601.

Enzyme and pathway databases

BioCycBSUB:BSU00390-MONOMER.

Family and domain databases

InterProIPR012278. DNase_TatD.
IPR018228. DNase_TatD-rel_CS.
IPR015991. DNase_TatD_bac-type.
IPR001130. TatD_superfamily.
[Graphical view]
KOK03424.
PANTHERPTHR10060. TatD_DNase. 1 hit.
PfamPF01026. TatD_DNase. 1 hit.
[Graphical view]
PIRSFPIRSF005902. DNase_TatD. 1 hit.
TIGRFAMsTIGR00010. TIGR00010. 1 hit.
PROSITEPS01137. TATD_1. 1 hit.
PS01090. TATD_2. 1 hit.
PS01091. TATD_3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameYABD_BACSU
AccessionPrimary (citable) accession number: P37545
Entry history
Integrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: October 1, 1994
Last modified: January 25, 2012
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Bacillus subtilis

Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList

SIMILARITY comments

Index of protein domains and families