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Protein

Uncharacterized HTH-type transcriptional regulator BphR

Gene

bphR

Organism
Burkholderia xenovorans (strain LB400)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi56 – 7520H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciBXEN266265:GJII-8850-MONOMER.
RETL1328306-WGS:GSTH-2306-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator BphR
Gene namesi
Name:bphR
Ordered Locus Names:Bxeno_C1132
ORF Names:Bxe_C1198
OrganismiBurkholderia xenovorans (strain LB400)
Taxonomic identifieri266265 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeParaburkholderia
Proteomesi
  • UP000001817 Componenti: Chromosome 3

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 245245Uncharacterized HTH-type transcriptional regulator BphRPRO_0000050706Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi266265.Bxe_C1198.

Structurei

3D structure databases

ProteinModelPortaliP37335.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini29 – 9668HTH gntR-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH gntR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4108PVQ. Bacteria.
COG1802. LUCA.
HOGENOMiHOG000273992.
OMAiGNENWEL.
OrthoDBiEOG61ZTGB.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
1.20.120.530. 1 hit.
InterProiIPR011711. GntR_C.
IPR008920. TF_FadR/GntR_C.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF07729. FCD. 1 hit.
PF00392. GntR. 1 hit.
[Graphical view]
SMARTiSM00895. FCD. 1 hit.
SM00345. HTH_GNTR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF48008. SSF48008. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P37335-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNARTPNSLT MGGDKSFADA SPVPIANVRS LIEATFQRLR ADIVEGRLAA
60 70 80 90 100
GSRLAIEDLK SRYEVSGGTV REALSLLVAN NLVQTQAQRG FHVTPMSLDD
110 120 130 140 150
MRDLAATRIA LECEALRQSV LNGDAEWEAR VVSSYHRLSL LDERTMRDPV
160 170 180 190 200
HLFNQWEQAN RDFHEALISA CSSAWTQRFL SILYLQMERY RRLTAMHNRP
210 220 230 240
ARNVHEEHLA LRDSALARDA ERCTELLRMH IESSISVVRQ FGLLR
Length:245
Mass (Da):27,785
Last modified:October 1, 1994 - v1
Checksum:i83D0CA62FF2EAF59
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M86348 Genomic DNA. Translation: AAB63424.1.
CP000272 Genomic DNA. Translation: ABE37060.1.
RefSeqiWP_011494300.1. NZ_CP008761.1.

Genome annotation databases

EnsemblBacteriaiABE37060; ABE37060; Bxe_C1198.
GeneIDi4010710.
KEGGibxb:DR64_8607.
bxe:Bxe_C1198.
PATRICi19343381. VBIBurXen52548_8948.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M86348 Genomic DNA. Translation: AAB63424.1.
CP000272 Genomic DNA. Translation: ABE37060.1.
RefSeqiWP_011494300.1. NZ_CP008761.1.

3D structure databases

ProteinModelPortaliP37335.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi266265.Bxe_C1198.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABE37060; ABE37060; Bxe_C1198.
GeneIDi4010710.
KEGGibxb:DR64_8607.
bxe:Bxe_C1198.
PATRICi19343381. VBIBurXen52548_8948.

Phylogenomic databases

eggNOGiENOG4108PVQ. Bacteria.
COG1802. LUCA.
HOGENOMiHOG000273992.
OMAiGNENWEL.
OrthoDBiEOG61ZTGB.

Enzyme and pathway databases

BioCyciBXEN266265:GJII-8850-MONOMER.
RETL1328306-WGS:GSTH-2306-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
1.20.120.530. 1 hit.
InterProiIPR011711. GntR_C.
IPR008920. TF_FadR/GntR_C.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF07729. FCD. 1 hit.
PF00392. GntR. 1 hit.
[Graphical view]
SMARTiSM00895. FCD. 1 hit.
SM00345. HTH_GNTR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF48008. SSF48008. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Nucleotide sequencing and transcriptional mapping of the genes encoding biphenyl dioxygenase, a multicomponent polychlorinated-biphenyl-degrading enzyme in Pseudomonas strain LB400."
    Erickson B.D., Mondello F.J.
    J. Bacteriol. 174:2903-2912(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: LB400.

Entry informationi

Entry nameiBPHR_BURXL
AccessioniPrimary (citable) accession number: P37335
Secondary accession number(s): Q13FS9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: October 1, 1994
Last modified: June 8, 2016
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.