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Protein

Uncharacterized HTH-type transcriptional regulator BphR

Gene

bphR

Organism
Paraburkholderia xenovorans (strain LB400)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi56 – 75H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator BphR
Gene namesi
Name:bphR
Ordered Locus Names:Bxeno_C1132
ORF Names:Bxe_C1198
OrganismiParaburkholderia xenovorans (strain LB400)
Taxonomic identifieri266265 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeParaburkholderia
Proteomesi
  • UP000001817 Componenti: Chromosome 3

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000507061 – 245Uncharacterized HTH-type transcriptional regulator BphRAdd BLAST245

Interactioni

Protein-protein interaction databases

STRINGi266265.Bxe_C1198.

Structurei

3D structure databases

ProteinModelPortaliP37335.
SMRiP37335.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini29 – 96HTH gntR-typePROSITE-ProRule annotationAdd BLAST68

Phylogenomic databases

eggNOGiENOG4108PVQ. Bacteria.
COG1802. LUCA.
HOGENOMiHOG000273992.
OMAiGNENWEL.
OrthoDBiPOG091H04QM.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
1.20.120.530. 1 hit.
InterProiView protein in InterPro
IPR011711. GntR_C.
IPR008920. TF_FadR/GntR_C.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF07729. FCD. 1 hit.
PF00392. GntR. 1 hit.
SMARTiView protein in SMART
SM00895. FCD. 1 hit.
SM00345. HTH_GNTR. 1 hit.
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF48008. SSF48008. 1 hit.
PROSITEiView protein in PROSITE
PS50949. HTH_GNTR. 1 hit.

Sequencei

Sequence statusi: Complete.

P37335-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNARTPNSLT MGGDKSFADA SPVPIANVRS LIEATFQRLR ADIVEGRLAA
60 70 80 90 100
GSRLAIEDLK SRYEVSGGTV REALSLLVAN NLVQTQAQRG FHVTPMSLDD
110 120 130 140 150
MRDLAATRIA LECEALRQSV LNGDAEWEAR VVSSYHRLSL LDERTMRDPV
160 170 180 190 200
HLFNQWEQAN RDFHEALISA CSSAWTQRFL SILYLQMERY RRLTAMHNRP
210 220 230 240
ARNVHEEHLA LRDSALARDA ERCTELLRMH IESSISVVRQ FGLLR
Length:245
Mass (Da):27,785
Last modified:October 1, 1994 - v1
Checksum:i83D0CA62FF2EAF59
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M86348 Genomic DNA. Translation: AAB63424.1.
CP000272 Genomic DNA. Translation: ABE37060.1.
RefSeqiWP_011494300.1. NZ_CP008761.1.

Genome annotation databases

EnsemblBacteriaiABE37060; ABE37060; Bxe_C1198.
GeneIDi4010710.
KEGGibxb:DR64_8607.
bxe:Bxe_C1198.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M86348 Genomic DNA. Translation: AAB63424.1.
CP000272 Genomic DNA. Translation: ABE37060.1.
RefSeqiWP_011494300.1. NZ_CP008761.1.

3D structure databases

ProteinModelPortaliP37335.
SMRiP37335.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi266265.Bxe_C1198.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABE37060; ABE37060; Bxe_C1198.
GeneIDi4010710.
KEGGibxb:DR64_8607.
bxe:Bxe_C1198.

Phylogenomic databases

eggNOGiENOG4108PVQ. Bacteria.
COG1802. LUCA.
HOGENOMiHOG000273992.
OMAiGNENWEL.
OrthoDBiPOG091H04QM.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
1.20.120.530. 1 hit.
InterProiView protein in InterPro
IPR011711. GntR_C.
IPR008920. TF_FadR/GntR_C.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF07729. FCD. 1 hit.
PF00392. GntR. 1 hit.
SMARTiView protein in SMART
SM00895. FCD. 1 hit.
SM00345. HTH_GNTR. 1 hit.
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF48008. SSF48008. 1 hit.
PROSITEiView protein in PROSITE
PS50949. HTH_GNTR. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiBPHR_PARXL
AccessioniPrimary (citable) accession number: P37335
Secondary accession number(s): Q13FS9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: October 1, 1994
Last modified: June 7, 2017
This is version 100 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.