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Protein

Inner membrane protein YfdC

Gene

yfdC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

BioCyciEcoCyc:G7217-MONOMER

Protein family/group databases

TCDBi1.A.16.4.1 the formate-nitrite transporter (fnt) family

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YfdC
Gene namesi
Name:yfdC
Ordered Locus Names:b2347, JW2344
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12420 yfdC

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 58CytoplasmicSequence analysisAdd BLAST58
Transmembranei59 – 81HelicalSequence analysisAdd BLAST23
Topological domaini82 – 90PeriplasmicSequence analysis9
Transmembranei91 – 113HelicalSequence analysisAdd BLAST23
Topological domaini114 – 133CytoplasmicSequence analysisAdd BLAST20
Transmembranei134 – 156HelicalSequence analysisAdd BLAST23
Topological domaini157 – 186PeriplasmicSequence analysisAdd BLAST30
Transmembranei187 – 206HelicalSequence analysisAdd BLAST20
Topological domaini207 – 212CytoplasmicSequence analysis6
Transmembranei213 – 232HelicalSequence analysisAdd BLAST20
Topological domaini233 – 251PeriplasmicSequence analysisAdd BLAST19
Transmembranei252 – 274HelicalSequence analysisAdd BLAST23
Topological domaini275 – 310CytoplasmicSequence analysisAdd BLAST36

GO - Cellular componenti

  • integral component of plasma membrane Source: GO_Central
  • plasma membrane Source: EcoCyc

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001692001 – 310Inner membrane protein YfdCAdd BLAST310

Proteomic databases

PaxDbiP37327
PRIDEiP37327

Interactioni

Protein-protein interaction databases

BioGridi4260539, 8 interactors
STRINGi316385.ECDH10B_2510

Structurei

3D structure databases

ProteinModelPortaliP37327
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105S64 Bacteria
COG2116 LUCA
HOGENOMiHOG000122534
InParanoidiP37327
KOiK21990
OMAiGWMIATM
PhylomeDBiP37327

Family and domain databases

Gene3Di1.20.1080.10, 1 hit
InterProiView protein in InterPro
IPR023271 Aquaporin-like
IPR000292 For/NO2_transpt
PANTHERiPTHR30520 PTHR30520, 1 hit
PfamiView protein in Pfam
PF01226 Form_Nir_trans, 1 hit

Sequencei

Sequence statusi: Complete.

P37327-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDNDKIDQHS DEIEVESEEK ERGKKIEIDE DRLPSRAMAI HEHIRQDGEK
60 70 80 90 100
ELERDAMALL WSAIAAGLSM GASLLAKGIF QVELEGVPGS FLLENLGYTF
110 120 130 140 150
GFIIVIMARQ QLFTENTVTA VLPVMQKPTM SNVGLLIRLW GVVLLGNILG
160 170 180 190 200
TGIAAWAFEY MPIFNEETRD AFVKIGMDVM KNTPSEMFAN AIISGWLIAT
210 220 230 240 250
MVWMFPAAGA AKIVVIILMT WLIALGDTTH IVVGSVEILY LVFNGTLHWS
260 270 280 290 300
DFIWPFALPT LAGNICGGTF IFALMSHAQI RNDMSNKRKA EARQKAERAE
310
NIKKNYKNPA
Length:310
Mass (Da):34,503
Last modified:October 1, 1994 - v1
Checksum:i96D34F450B209ED3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC75407.1
AP009048 Genomic DNA Translation: BAA16207.1
U11296 Unassigned DNA No translation available.
PIRiA65008
RefSeqiNP_416849.1, NC_000913.3
WP_000368140.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC75407; AAC75407; b2347
BAA16207; BAA16207; BAA16207
GeneIDi944801
KEGGiecj:JW2344
eco:b2347
PATRICifig|1411691.4.peg.4385

Similar proteinsi

Entry informationi

Entry nameiYFDC_ECOLI
AccessioniPrimary (citable) accession number: P37327
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: October 1, 1994
Last modified: March 28, 2018
This is version 116 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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