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Protein

Inner membrane protein YfdC

Gene

yfdC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7217-MONOMER.
ECOL316407:JW2344-MONOMER.

Protein family/group databases

TCDBi1.A.16.4.1. the formate-nitrite transporter (fnt) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YfdC
Gene namesi
Name:yfdC
Ordered Locus Names:b2347, JW2344
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12420. yfdC.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 5858CytoplasmicSequence analysisAdd
BLAST
Transmembranei59 – 8123HelicalSequence analysisAdd
BLAST
Topological domaini82 – 909PeriplasmicSequence analysis
Transmembranei91 – 11323HelicalSequence analysisAdd
BLAST
Topological domaini114 – 13320CytoplasmicSequence analysisAdd
BLAST
Transmembranei134 – 15623HelicalSequence analysisAdd
BLAST
Topological domaini157 – 18630PeriplasmicSequence analysisAdd
BLAST
Transmembranei187 – 20620HelicalSequence analysisAdd
BLAST
Topological domaini207 – 2126CytoplasmicSequence analysis
Transmembranei213 – 23220HelicalSequence analysisAdd
BLAST
Topological domaini233 – 25119PeriplasmicSequence analysisAdd
BLAST
Transmembranei252 – 27423HelicalSequence analysisAdd
BLAST
Topological domaini275 – 31036CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of plasma membrane Source: GO_Central
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 310310Inner membrane protein YfdCPRO_0000169200Add
BLAST

Proteomic databases

PaxDbiP37327.

Interactioni

Protein-protein interaction databases

BioGridi4260539. 8 interactions.
STRINGi511145.b2347.

Structurei

3D structure databases

ProteinModelPortaliP37327.
SMRiP37327. Positions 184-278.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105S64. Bacteria.
COG2116. LUCA.
HOGENOMiHOG000122534.
InParanoidiP37327.
OMAiGWMIATM.
OrthoDBiEOG661HBX.
PhylomeDBiP37327.

Family and domain databases

Gene3Di1.20.1080.10. 1 hit.
InterProiIPR023271. Aquaporin-like.
IPR000292. For/NO2_transpt.
[Graphical view]
PfamiPF01226. Form_Nir_trans. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P37327-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDNDKIDQHS DEIEVESEEK ERGKKIEIDE DRLPSRAMAI HEHIRQDGEK
60 70 80 90 100
ELERDAMALL WSAIAAGLSM GASLLAKGIF QVELEGVPGS FLLENLGYTF
110 120 130 140 150
GFIIVIMARQ QLFTENTVTA VLPVMQKPTM SNVGLLIRLW GVVLLGNILG
160 170 180 190 200
TGIAAWAFEY MPIFNEETRD AFVKIGMDVM KNTPSEMFAN AIISGWLIAT
210 220 230 240 250
MVWMFPAAGA AKIVVIILMT WLIALGDTTH IVVGSVEILY LVFNGTLHWS
260 270 280 290 300
DFIWPFALPT LAGNICGGTF IFALMSHAQI RNDMSNKRKA EARQKAERAE
310
NIKKNYKNPA
Length:310
Mass (Da):34,503
Last modified:October 1, 1994 - v1
Checksum:i96D34F450B209ED3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75407.1.
AP009048 Genomic DNA. Translation: BAA16207.1.
U11296 Unassigned DNA. No translation available.
PIRiA65008.
RefSeqiNP_416849.1. NC_000913.3.
WP_000368140.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75407; AAC75407; b2347.
BAA16207; BAA16207; BAA16207.
GeneIDi944801.
KEGGiecj:JW2344.
eco:b2347.
PATRICi32120069. VBIEscCol129921_2444.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75407.1.
AP009048 Genomic DNA. Translation: BAA16207.1.
U11296 Unassigned DNA. No translation available.
PIRiA65008.
RefSeqiNP_416849.1. NC_000913.3.
WP_000368140.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP37327.
SMRiP37327. Positions 184-278.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260539. 8 interactions.
STRINGi511145.b2347.

Protein family/group databases

TCDBi1.A.16.4.1. the formate-nitrite transporter (fnt) family.

Proteomic databases

PaxDbiP37327.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75407; AAC75407; b2347.
BAA16207; BAA16207; BAA16207.
GeneIDi944801.
KEGGiecj:JW2344.
eco:b2347.
PATRICi32120069. VBIEscCol129921_2444.

Organism-specific databases

EchoBASEiEB2319.
EcoGeneiEG12420. yfdC.

Phylogenomic databases

eggNOGiENOG4105S64. Bacteria.
COG2116. LUCA.
HOGENOMiHOG000122534.
InParanoidiP37327.
OMAiGWMIATM.
OrthoDBiEOG661HBX.
PhylomeDBiP37327.

Enzyme and pathway databases

BioCyciEcoCyc:G7217-MONOMER.
ECOL316407:JW2344-MONOMER.

Miscellaneous databases

PROiP37327.

Family and domain databases

Gene3Di1.20.1080.10. 1 hit.
InterProiIPR023271. Aquaporin-like.
IPR000292. For/NO2_transpt.
[Graphical view]
PfamiPF01226. Form_Nir_trans. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Baumann S.
    Submitted (JUN-1994) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12.
  2. "Construction of a contiguous 874-kb sequence of the Escherichia coli-K12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features."
    Yamamoto Y., Aiba H., Baba T., Hayashi K., Inada T., Isono K., Itoh T., Kimura S., Kitagawa M., Makino K., Miki T., Mitsuhashi N., Mizobuchi K., Mori H., Nakade S., Nakamura Y., Nashimoto H., Oshima T.
    , Oyama S., Saito N., Sampei G., Satoh Y., Sivasundaram S., Tagami H., Takahashi H., Takeda J., Takemoto K., Uehara K., Wada C., Yamagata S., Horiuchi T.
    DNA Res. 4:91-113(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. Rudd K.E.
    Unpublished observations (AUG-1994)
    Cited for: IDENTIFICATION.
  6. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYFDC_ECOLI
AccessioniPrimary (citable) accession number: P37327
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: October 1, 1994
Last modified: January 20, 2016
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.