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Protein

Uncharacterized protein YbcH

Gene

ybcH

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG12448-MONOMER.
ECOL316407:JW0556-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbcH
Gene namesi
Name:ybcH
Ordered Locus Names:b0567, JW0556
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12448. ybcH.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2020Sequence analysisAdd
BLAST
Chaini21 – 296276Uncharacterized protein YbcHPRO_0000013797Add
BLAST

Proteomic databases

PaxDbiP37325.

Interactioni

Protein-protein interaction databases

BioGridi4259889. 231 interactions.
IntActiP37325. 4 interactions.
STRINGi511145.b0567.

Structurei

3D structure databases

ProteinModelPortaliP37325.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105QUW. Bacteria.
ENOG4111Z9C. LUCA.
HOGENOMiHOG000117800.
OMAiLYMDPAY.
OrthoDBiEOG6K6V65.

Family and domain databases

InterProiIPR027849. DUF4434.
[Graphical view]
PfamiPF14488. DUF4434. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P37325-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRKFIFVLLT LLLVSPFSFA MKGIIWQPQN RDSQVTDTQW QGLMSQLRLQ
60 70 80 90 100
GFDTLVLQWT RYGDAFTQPE QRTLLFKRAA AAQQAGLKLI VGLNADPEFF
110 120 130 140 150
MHQKQSSAAL ESYLNRLLAA DLQQARLWSA APGITPDGWY ISAEIDDLNW
160 170 180 190 200
RSEAARQPLL TWLNNAQRLI SDVSAKPVYI SSFFAGNMSP DGYRQLLEHV
210 220 230 240 250
KATGVNVWVQ DGSGVDKLTA EQRERYLQAS ADCQSPAPAS GVVYELFVAG
260 270 280 290
KGKTFTAKPK PDAEIASLLA KRSSCGKDTL YFSLRYLPVA HGILEY
Length:296
Mass (Da):33,057
Last modified:December 1, 2000 - v2
Checksum:iA57F0E8191F945C9
GO

Sequence cautioni

The sequence L16945 differs from that shown. Reason: Frameshift at position 131. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti81 – 811A → R (PubMed:8226649).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L16945 Unassigned DNA. No translation available.
U82598 Genomic DNA. Translation: AAB40765.1.
U00096 Genomic DNA. Translation: AAC73668.1.
AP009048 Genomic DNA. Translation: BAA35201.1.
PIRiE64789.
RefSeqiNP_415099.1. NC_000913.3.
WP_001224604.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73668; AAC73668; b0567.
BAA35201; BAA35201; BAA35201.
GeneIDi945186.
KEGGiecj:JW0556.
eco:b0567.
PATRICi32116302. VBIEscCol129921_0591.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L16945 Unassigned DNA. No translation available.
U82598 Genomic DNA. Translation: AAB40765.1.
U00096 Genomic DNA. Translation: AAC73668.1.
AP009048 Genomic DNA. Translation: BAA35201.1.
PIRiE64789.
RefSeqiNP_415099.1. NC_000913.3.
WP_001224604.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP37325.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259889. 231 interactions.
IntActiP37325. 4 interactions.
STRINGi511145.b0567.

Proteomic databases

PaxDbiP37325.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73668; AAC73668; b0567.
BAA35201; BAA35201; BAA35201.
GeneIDi945186.
KEGGiecj:JW0556.
eco:b0567.
PATRICi32116302. VBIEscCol129921_0591.

Organism-specific databases

EchoBASEiEB2342.
EcoGeneiEG12448. ybcH.

Phylogenomic databases

eggNOGiENOG4105QUW. Bacteria.
ENOG4111Z9C. LUCA.
HOGENOMiHOG000117800.
OMAiLYMDPAY.
OrthoDBiEOG6K6V65.

Enzyme and pathway databases

BioCyciEcoCyc:EG12448-MONOMER.
ECOL316407:JW0556-MONOMER.

Miscellaneous databases

PROiP37325.

Family and domain databases

InterProiIPR027849. DUF4434.
[Graphical view]
PfamiPF14488. DUF4434. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Two overlapping genes encoding membrane proteins required for bacteriophage N4 adsorption."
    Kiino D.R., Singer M.S., Rothman-Denes L.B.
    J. Bacteriol. 175:7081-7085(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. "Sequence of minutes 4-25 of Escherichia coli."
    Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M., Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D., Namath A., Oefner P., Roberts D., Schramm S., Davis R.W.
    Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  5. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYBCH_ECOLI
AccessioniPrimary (citable) accession number: P37325
Secondary accession number(s): P77641
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: December 1, 2000
Last modified: January 20, 2016
This is version 97 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.