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Protein

Uncharacterized fimbrial-like protein YadM

Gene

yadM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Part of the yadCKLM-htrE-yadVN fimbrial operon. Could contribute to adhesion to various surfaces in specific environmental niches.1 Publication

GO - Biological processi

  • cell adhesion Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG12327-MONOMER.
ECOL316407:JW0134-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized fimbrial-like protein YadM
Gene namesi
Name:yadM
Ordered Locus Names:b0138, JW0134
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12327. yadM.

Subcellular locationi

GO - Cellular componenti

  • pilus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Fimbrium

Pathology & Biotechi

Disruption phenotypei

Deletion of the operon under classical laboratory conditions does not result in any major effect on E.coli capacity to form biofilms compared with the wild-type strain.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 23Sequence analysisAdd BLAST23
ChainiPRO_000001378324 – 189Uncharacterized fimbrial-like protein YadMAdd BLAST166

Proteomic databases

PaxDbiP37018.
PRIDEiP37018.

Expressioni

Inductioni

Repressed by H-NS.1 Publication

Interactioni

Protein-protein interaction databases

BioGridi4259741. 9 interactors.
STRINGi511145.b0138.

Structurei

3D structure databases

ProteinModelPortaliP37018.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the fimbrial protein family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4108XEY. Bacteria.
ENOG410Y46X. LUCA.
HOGENOMiHOG000116900.
OMAiANEVEMT.

Family and domain databases

Gene3Di2.60.40.1090. 1 hit.
InterProiIPR008966. Adhesion_dom.
IPR000259. Adhesion_dom_fimbrial.
[Graphical view]
PfamiPF00419. Fimbrial. 1 hit.
[Graphical view]
SUPFAMiSSF49401. SSF49401. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P37018-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIKTTPHKIV ILMGILLSPS VFATDINVEF TATVKATTCN ITLTGNNVTN
60 70 80 90 100
DGNNNYTLRI PKMGLDKIAN KTTESQADFK LVASGCSSGI SWIDTTLTGN
110 120 130 140 150
ASSSSPKLII PQSGDSSSTT SNIGMGFKKR TTDDATFLKP NSAEKIRWST
160 170 180
DEMQPDKGLE MTVALRETDA GQGVPGNFRA LATFNFIYQ
Length:189
Mass (Da):20,307
Last modified:June 1, 1994 - v1
Checksum:iC84CB14D0CBBA3D5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73249.2.
AP009048 Genomic DNA. Translation: BAB96715.1.
RefSeqiNP_414680.4. NC_000913.3.
WP_000598300.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73249; AAC73249; b0138.
BAB96715; BAB96715; BAB96715.
GeneIDi944828.
KEGGiecj:JW0134.
eco:b0138.
PATRICi32115381. VBIEscCol129921_0142.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73249.2.
AP009048 Genomic DNA. Translation: BAB96715.1.
RefSeqiNP_414680.4. NC_000913.3.
WP_000598300.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP37018.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259741. 9 interactors.
STRINGi511145.b0138.

Proteomic databases

PaxDbiP37018.
PRIDEiP37018.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73249; AAC73249; b0138.
BAB96715; BAB96715; BAB96715.
GeneIDi944828.
KEGGiecj:JW0134.
eco:b0138.
PATRICi32115381. VBIEscCol129921_0142.

Organism-specific databases

EchoBASEiEB2231.
EcoGeneiEG12327. yadM.

Phylogenomic databases

eggNOGiENOG4108XEY. Bacteria.
ENOG410Y46X. LUCA.
HOGENOMiHOG000116900.
OMAiANEVEMT.

Enzyme and pathway databases

BioCyciEcoCyc:EG12327-MONOMER.
ECOL316407:JW0134-MONOMER.

Miscellaneous databases

PROiP37018.

Family and domain databases

Gene3Di2.60.40.1090. 1 hit.
InterProiIPR008966. Adhesion_dom.
IPR000259. Adhesion_dom_fimbrial.
[Graphical view]
PfamiPF00419. Fimbrial. 1 hit.
[Graphical view]
SUPFAMiSSF49401. SSF49401. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYADM_ECOLI
AccessioniPrimary (citable) accession number: P37018
Secondary accession number(s): P75661
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 1, 1994
Last sequence update: June 1, 1994
Last modified: November 2, 2016
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Miscellaneous

The operon is cryptic under classical laboratory conditions, but is functional when constitutively expressed.1 Publication

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.