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Protein

Inactive recombination-promoting nuclease-like protein RpnE

Gene

yfaD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Upon expression has no effect on RecA-independent DNA recombination, cell viability or DNA damage (PubMed:28096446).1 Publication

Enzyme and pathway databases

BioCyciEcoCyc:EG12323-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Inactive recombination-promoting nuclease-like protein RpnE
Gene namesi
Name:yfaD
Ordered Locus Names:b2244, JW2238
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12323 yfaD

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001691721 – 299Inactive recombination-promoting nuclease-like protein RpnEAdd BLAST299

Proteomic databases

PaxDbiP37014
PRIDEiP37014

Interactioni

Protein-protein interaction databases

BioGridi4262943, 9 interactors
IntActiP37014, 3 interactors
STRINGi316385.ECDH10B_2403

Structurei

3D structure databases

ProteinModelPortaliP37014
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the Rpn/YhgA-like nuclease family.Curated

Phylogenomic databases

eggNOGiENOG4105DNE Bacteria
COG5464 LUCA
HOGENOMiHOG000116866
InParanoidiP37014
OMAiISTNLME
PhylomeDBiP37014

Family and domain databases

InterProiView protein in InterPro
IPR010106 RpnA
IPR006842 Transposase_31
PfamiView protein in Pfam
PF04754 Transposase_31, 1 hit
TIGRFAMsiTIGR01784 T_den_put_tspse, 1 hit

Sequencei

Sequence statusi: Complete.

P37014-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTESTTSSPH DAVFKTFMFT PETARDFLEI HLPEPLRKLC NLQTLRLEPT
60 70 80 90 100
SFIEKSLRAY YSDVLWSVET SDGDGYIYCV IEHQSSAEKN MAFRLMRYAT
110 120 130 140 150
AAMQRHQDKG YDRVPLVVPL LFYHGETSPY PYSLNWLDEF DDPQLARQLY
160 170 180 190 200
TEAFLLVDIT IVPDDEIMQH RRIALLELIQ KHIRDRDLIG MVDRITTLLV
210 220 230 240 250
RGFTNDSQLQ TLFNYLLQCG DTSRFTRFIE EIAERSPLQK ERLMTIAERL
260 270 280 290
RQEGHQIGWQ EGMHEQAIKI ALRMLEQGFE REIVLATTQL TDADIPNCH
Length:299
Mass (Da):34,923
Last modified:November 1, 1997 - v3
Checksum:i593E99411667BF1B
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti86S → C in AAA83867 (PubMed:3286606).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC75304.1
AP009048 Genomic DNA Translation: BAA16063.1
M20938 Genomic DNA Translation: AAA83867.1
PIRiB64995
RefSeqiNP_416747.1, NC_000913.3
WP_000140592.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC75304; AAC75304; b2244
BAA16063; BAA16063; BAA16063
GeneIDi946737
KEGGiecj:JW2238
eco:b2244
PATRICifig|511145.12.peg.2334

Similar proteinsi

Entry informationi

Entry nameiRPNE_ECOLI
AccessioniPrimary (citable) accession number: P37014
Secondary accession number(s): P77771
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 1, 1994
Last sequence update: November 1, 1997
Last modified: March 28, 2018
This is version 121 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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