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Protein

Cold shock-like protein CspB

Gene

cspB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • RNA binding Source: EcoCyc
  • single-stranded DNA binding Source: EcoliWiki

GO - Biological processi

Keywordsi

Molecular functionActivator, DNA-binding
Biological processStress response, Transcription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:EG12203-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Cold shock-like protein CspB
Short name:
CSP-B
Gene namesi
Name:cspB
Ordered Locus Names:b1557, JW1549
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12203 cspB

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001002401 – 71Cold shock-like protein CspBAdd BLAST71

Proteomic databases

PaxDbiP36995
PRIDEiP36995

Expressioni

Inductioni

In response to low temperature (at protein level).1 Publication

Interactioni

Protein-protein interaction databases

BioGridi4259129, 6 interactors
DIPiDIP-9334N
IntActiP36995, 33 interactors
STRINGi316385.ECDH10B_1689

Structurei

3D structure databases

ProteinModelPortaliP36995
SMRiP36995
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini7 – 67CSDAdd BLAST61

Phylogenomic databases

eggNOGiENOG4105VEQ Bacteria
COG1278 LUCA
HOGENOMiHOG000070674
InParanoidiP36995
KOiK03704
OMAiPQADNIT
PhylomeDBiP36995

Family and domain databases

CDDicd04458 CSP_CDS, 1 hit
InterProiView protein in InterPro
IPR019844 Cold-shock_CS
IPR012156 Cold_shock_CspA
IPR011129 CSD
IPR002059 CSP_DNA-bd
IPR012340 NA-bd_OB-fold
PfamiView protein in Pfam
PF00313 CSD, 1 hit
PIRSFiPIRSF002599 Cold_shock_A, 1 hit
PRINTSiPR00050 COLDSHOCK
SMARTiView protein in SMART
SM00357 CSP, 1 hit
SUPFAMiSSF50249 SSF50249, 1 hit
PROSITEiView protein in PROSITE
PS00352 CSD_1, 1 hit
PS51857 CSD_2, 1 hit

Sequencei

Sequence statusi: Complete.

P36995-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSNKMTGLVK WFNADKGFGF ISPVDGSKDV FVHFSAIQND NYRTLFEGQK
60 70
VTFSIESGAK GPAAANVIIT D
Length:71
Mass (Da):7,717
Last modified:June 1, 1994 - v1
Checksum:iB8672969E165AD8A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L28429 Genomic DNA Translation: AAA23618.1
AF003590 Genomic DNA Translation: AAB61739.1
U00096 Genomic DNA Translation: AAC74630.1
AP009048 Genomic DNA Translation: BAA15256.1
PIRiS43617
RefSeqiNP_416075.1, NC_000913.3
WP_000066484.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC74630; AAC74630; b1557
BAA15256; BAA15256; BAA15256
GeneIDi946091
KEGGiecj:JW1549
eco:b1557
PATRICifig|1411691.4.peg.706

Similar proteinsi

Entry informationi

Entry nameiCSPB_ECOLI
AccessioniPrimary (citable) accession number: P36995
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 1, 1994
Last sequence update: June 1, 1994
Last modified: March 28, 2018
This is version 129 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health