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Protein

Recombination-associated protein RdgC

Gene

rdgC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

May be involved in recombination.

GO - Molecular functioni

  • double-stranded DNA binding Source: EcoCyc
  • single-stranded DNA binding Source: EcoCyc

GO - Biological processi

  • DNA recombination Source: UniProtKB-HAMAP
  • regulation of DNA recombination Source: EcoCyc
Complete GO annotation...

Keywords - Biological processi

DNA recombination

Enzyme and pathway databases

BioCyciEcoCyc:EG12158-MONOMER.
ECOL316407:JW0384-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Recombination-associated protein RdgC
Gene namesi
Name:rdgC
Synonyms:yaiD
Ordered Locus Names:b0393, JW0384
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12158. rdgC.

Subcellular locationi

GO - Cellular componenti

  • bacterial nucleoid Source: EcoCyc
  • cytosol Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 303303Recombination-associated protein RdgCPRO_0000211737Add
BLAST

Proteomic databases

EPDiP36767.
PaxDbiP36767.
PRIDEiP36767.

Interactioni

Protein-protein interaction databases

BioGridi4263190. 124 interactions.
DIPiDIP-10649N.
IntActiP36767. 6 interactions.
STRINGi511145.b0393.

Structurei

Secondary structure

1
303
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi5 – 1410Combined sources
Helixi20 – 289Combined sources
Beta strandi40 – 467Combined sources
Helixi50 – 523Combined sources
Beta strandi56 – 7419Combined sources
Helixi77 – 9216Combined sources
Beta strandi101 – 1033Combined sources
Helixi106 – 11510Combined sources
Turni116 – 1183Combined sources
Beta strandi120 – 13112Combined sources
Turni132 – 1354Combined sources
Beta strandi136 – 1394Combined sources
Helixi144 – 15815Combined sources
Beta strandi163 – 1653Combined sources
Beta strandi168 – 1703Combined sources
Helixi172 – 18211Combined sources
Beta strandi189 – 19810Combined sources
Beta strandi206 – 2116Combined sources
Beta strandi214 – 2163Combined sources
Helixi217 – 2248Combined sources
Beta strandi228 – 2369Combined sources
Turni237 – 2393Combined sources
Beta strandi240 – 2456Combined sources
Beta strandi250 – 2556Combined sources
Helixi257 – 2604Combined sources
Turni262 – 2654Combined sources
Helixi271 – 29626Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2OWLX-ray2.40A/B1-303[»]
ProteinModelPortaliP36767.
SMRiP36767. Positions 1-302.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP36767.

Family & Domainsi

Sequence similaritiesi

Belongs to the RdgC family.Curated

Phylogenomic databases

eggNOGiENOG4105DH7. Bacteria.
COG2974. LUCA.
HOGENOMiHOG000117544.
InParanoidiP36767.
KOiK03554.
OMAiPCSSQDI.
OrthoDBiEOG6WX4MD.
PhylomeDBiP36767.

Family and domain databases

HAMAPiMF_00194. RdgC.
InterProiIPR007476. RdgC.
[Graphical view]
PfamiPF04381. RdgC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P36767-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLWFKNLMVY RLSREISLRA EEMEKQLASM AFTPCGSQDM AKMGWVPPMG
60 70 80 90 100
SHSDALTHVA NGQIVICARK EEKILPSPVI KQALEAKIAK LEAEQARKLK
110 120 130 140 150
KTEKDSLKDE VLHSLLPRAF SRFSQTMMWI DTVNGLIMVD CASAKKAEDT
160 170 180 190 200
LALLRKSLGS LPVVPLSMEN PIELTLTEWV RSGSAAQGFQ LLDEAELKSL
210 220 230 240 250
LEDGGVIRAK KQDLTSEEIT NHIEAGKVVT KLALDWQQRI QFVMCDDGSL
260 270 280 290 300
KRLKFCDELR DQNEDIDRED FAQRFDADFI LMTGELAALI QNLIEGLGGE

AQR
Length:303
Mass (Da):33,993
Last modified:June 1, 1994 - v1
Checksum:i1825EB06B6A67005
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X76979 Genomic DNA. Translation: CAA54285.1.
U73857 Genomic DNA. Translation: AAB18117.1.
U00096 Genomic DNA. Translation: AAC73496.1.
AP009048 Genomic DNA. Translation: BAE76174.1.
PIRiS41303.
RefSeqiNP_414927.1. NC_000913.3.
WP_001298537.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73496; AAC73496; b0393.
BAE76174; BAE76174; BAE76174.
GeneIDi948585.
KEGGiecj:JW0384.
eco:b0393.
PATRICi32115929. VBIEscCol129921_0406.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X76979 Genomic DNA. Translation: CAA54285.1.
U73857 Genomic DNA. Translation: AAB18117.1.
U00096 Genomic DNA. Translation: AAC73496.1.
AP009048 Genomic DNA. Translation: BAE76174.1.
PIRiS41303.
RefSeqiNP_414927.1. NC_000913.3.
WP_001298537.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2OWLX-ray2.40A/B1-303[»]
ProteinModelPortaliP36767.
SMRiP36767. Positions 1-302.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263190. 124 interactions.
DIPiDIP-10649N.
IntActiP36767. 6 interactions.
STRINGi511145.b0393.

Proteomic databases

EPDiP36767.
PaxDbiP36767.
PRIDEiP36767.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73496; AAC73496; b0393.
BAE76174; BAE76174; BAE76174.
GeneIDi948585.
KEGGiecj:JW0384.
eco:b0393.
PATRICi32115929. VBIEscCol129921_0406.

Organism-specific databases

EchoBASEiEB2078.
EcoGeneiEG12158. rdgC.

Phylogenomic databases

eggNOGiENOG4105DH7. Bacteria.
COG2974. LUCA.
HOGENOMiHOG000117544.
InParanoidiP36767.
KOiK03554.
OMAiPCSSQDI.
OrthoDBiEOG6WX4MD.
PhylomeDBiP36767.

Enzyme and pathway databases

BioCyciEcoCyc:EG12158-MONOMER.
ECOL316407:JW0384-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP36767.
PROiP36767.

Family and domain databases

HAMAPiMF_00194. RdgC.
InterProiIPR007476. RdgC.
[Graphical view]
PfamiPF04381. RdgC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Recombination-dependent growth in exonuclease-depleted recBC sbcBC strains of Escherichia coli K-12."
    Ryder L., Sharples G.J., Lloyd R.G.
    Genetics 143:1101-1114(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12.
  2. "Sequence of minutes 4-25 of Escherichia coli."
    Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M., Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D., Namath A., Oefner P., Roberts D., Schramm S., Davis R.W.
    Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. "Identification of two new proteins in spermidine nucleoids isolated from Escherichia coli."
    Murphy L.D., Rosner J.L., Zimmerman S.B., Esposito D.
    J. Bacteriol. 181:3842-3844(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 1-15.

Entry informationi

Entry nameiRDGC_ECOLI
AccessioniPrimary (citable) accession number: P36767
Secondary accession number(s): Q2MC32
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 1, 1994
Last sequence update: June 1, 1994
Last modified: July 6, 2016
This is version 127 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.