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Protein

Prepilin peptidase-dependent protein D

Gene

ppdD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Not yet known.

Enzyme and pathway databases

BioCyciEcoCyc:EG12107-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Prepilin peptidase-dependent protein D
Gene namesi
Name:ppdD
Ordered Locus Names:b0108, JW0104
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12107. ppdD.

Subcellular locationi

GO - Cellular componenti

  • pilus Source: UniProtKB-SubCell

Keywords - Cellular componenti

Fimbrium

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
PropeptideiPRO_00000242801 – 6By similarity6
ChainiPRO_00000242817 – 146Prepilin peptidase-dependent protein DAdd BLAST140

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei7N-methylphenylalaninePROSITE-ProRule annotation1

Keywords - PTMi

Methylation

Proteomic databases

PaxDbiP36647.
PRIDEiP36647.

Interactioni

Protein-protein interaction databases

BioGridi4259343. 5 interactors.
STRINGi316385.ECDH10B_0088.

Structurei

3D structure databases

ProteinModelPortaliP36647.
SMRiP36647.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the N-Me-Phe pilin family.Curated

Phylogenomic databases

eggNOGiENOG4108ZUW. Bacteria.
COG4969. LUCA.
HOGENOMiHOG000008197.
InParanoidiP36647.
KOiK02682.

Family and domain databases

InterProiView protein in InterPro
IPR012902. N_methyl_site.
PfamiView protein in Pfam
PF07963. N_methyl. 1 hit.
TIGRFAMsiTIGR02532. IV_pilin_GFxxxE. 1 hit.
PROSITEiView protein in PROSITE
PS00409. PROKAR_NTER_METHYL. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P36647-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDKQRGFTLI ELMVVIGIIA ILSAIGIPAY QNYLRKAALT DMLQTFVPYR
60 70 80 90 100
TAVELCALEH GGLDTCDGGS NGIPSPTTTR YVSAMSVAKG VVSLTGQESL
110 120 130 140
NGLSVVMTPG WDNANGVTGW TRNCNIQSDS ALQQACEDVF RFDDAN
Length:146
Mass (Da):15,622
Last modified:February 1, 1995 - v2
Checksum:i7905D78A1E8B17A0
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti1 – 5MDKQR → DGQAT (PubMed:8202364).Curated5

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L20834 Genomic DNA. No translation available.
L28105 Genomic DNA. Translation: AAC36923.1.
U00096 Genomic DNA. Translation: AAC73219.1.
AP009048 Genomic DNA. Translation: BAB96678.2.
PIRiD64733.
RefSeqiNP_414650.1. NC_000913.3.
WP_000360904.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73219; AAC73219; b0108.
BAB96678; BAB96678; BAB96678.
GeneIDi945817.
KEGGiecj:JW0104.
eco:b0108.
PATRICifig|1411691.4.peg.2174.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiPPDD_ECOLI
AccessioniPrimary (citable) accession number: P36647
Secondary accession number(s): Q8KMZ6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 1, 1994
Last sequence update: February 1, 1995
Last modified: July 5, 2017
This is version 126 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families