Reviewed, UniProtKB/Swiss-Prot P36351 (COAT_PHMV)

Names and origin

Protein names	Recommended name:     Coat protein Alternative name(s):     Virion protein
Organism	Physalis mottle virus (PhMV) (Belladonna mottle virus-Iowa)
Taxonomic identifier	72539 [NCBI]
Taxonomic lineage	Viruses › ssRNA positive-strand viruses, no DNA stage › Tymoviridae › Tymovirus
Virus host	Physalis heterophylla [TaxID: 304155]

Protein attributes

Sequence length	188 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

General annotation (Comments)

Subunit structure	The virus coat is composed of 180 copies of the coat protein arranged in a icosahedral shell.
Subcellular location	Virion Potential.
Sequence similarities	Belongs to the tymoviruses coat protein family.

Ontologies

Keywords
Cellular component	Capsid protein Virion
Technical term	3D-structure
Gene Ontology (GO)
Cellular component	viral capsid Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	structural molecule activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 188

188

Coat protein

PRO_0000222925

Secondary structure

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188

Helix Strand Turn

Details...

Beta strand

24 – 26

3

Beta strand

35 – 38

4

Beta strand

44 – 46

3

Beta strand

49 – 53

5

Turn

54 – 56

3

Helix

58 – 64

7

Beta strand

72 – 77

6

Beta strand

86 – 88

3

Beta strand

91 – 101

11

Turn

105 – 109

5

Beta strand

110 – 118

9

Beta strand

120 – 123

4

Beta strand

125 – 127

3

Beta strand

152 – 157

6

Beta strand

174 – 178

5

Sequences

	Sequence		Length	Mass (Da)
	P36351-1 [UniParc]. Last modified June 1, 1994. Version 1. Checksum: D1DC64831FF5DC61	FASTA	188	19,974
	10 20 30 40 50 60 MDSSEVVKVK QASIPAPGSI LSQPNTEQSP AIVLPFQFEA TTFGTAETAA QVSLQTADPI 70 80 90 100 110 120 TKLTAPYRHA QIVECKAILT PTDLAVSNPL TVYLAWVPAN SPATPTQILR VYGGQSFVLG 130 140 150 160 170 180 GAISAAKTIE VPLNLDSVNR MLKDSVTYTD TPKLLAYSRA PTNPSKIPTA SIQISGRIRL SKPMLIAN

References

[1]	"Nucleotide sequence of the 3' terminal region of belladonna mottle virus-Iowa (renamed Physalis mottle virus) RNA and an analysis of the relationships of tymoviral coat proteins." Jacob A.N.K., Murthy M.R., Savithri H.S. Arch. Virol. 123:367-377(1992) [PubMed: 1562236] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
[2]	"Architecture of physalis mottle tymovirus as probed by monoclonal antibodies and cross-linking studies." Kekuda R., Karande A.A., Jacob A.N.K., Savithri H.S. Virology 193:959-966(1993) [PubMed: 8460497] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
+	Additional computationally mapped references.

Web resources

Virus Particle ExploreR db

Icosahedral empty capsid structure

Virus Particle ExploreR db

Icosahedral capsid structure

Cross-references

Sequence databases

EMBLGenBankDDBJ

S97776 Genomic RNA. Translation: AAB21997.1.

PIR

B45540.

RefSeq

NP_619757.1.

3D structure databases

PDBPDBe

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1E57	X-ray	3.20	A/B/C	1-188	[»]
1QJZ	X-ray	3.80	A/B/C	1-188	[»]

ModBase

Search...

Genome annotation databases

GeneID

940246.

Family and domain databases

InterPro

IPR000574. Tymo_coat.
[Graphical view]

Pfam

PF00983. Tymo_coat. 1 hit.
[Graphical view]

ProDom

PD003886. Tymo_coat. 1 hit.
[Graphical view] [Entries sharing at least one domain]

ProtoNet

Search...

Entry information

Entry name

COAT_PHMV

Accession

Primary (citable) accession number: P36351

Entry history

Integrated into UniProtKB/Swiss-Prot:	June 1, 1994
Last sequence update:	June 1, 1994
Last modified:	June 16, 2009
This is version 49 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

Virus (Virus annotation project)