Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Nucleoprotein

Gene

N

Organism
Tomato spotted wilt virus (strain SA-05) (TSWV) (Groundnut ringspot virus)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Encapsidates the RNA.

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein

Keywords - Ligandi

RNA-binding, Viral nucleoprotein

Names & Taxonomyi

Protein namesi
Recommended name:
Nucleoprotein
Alternative name(s):
Nucleocapsid protein
Short name:
Protein N
Gene namesi
Name:N
OrganismiTomato spotted wilt virus (strain SA-05) (TSWV) (Groundnut ringspot virus)
Taxonomic identifieri12675 [NCBI]
Taxonomic lineageiVirusesssRNA negative-strand virusesBunyaviridaeTospovirus
Virus hostiFrankliniella occidentalis (Western flower thrips) [TaxID: 133901]
Scirtothrips dorsalis [TaxID: 163899]
Solanum lycopersicum (Tomato) (Lycopersicon esculentum) [TaxID: 4081]
Thrips tabaci [TaxID: 161014]

Subcellular locationi

Virion Curated

GO - Cellular componenti

  1. helical viral capsid Source: UniProtKB-KW
  2. ribonucleoprotein complex Source: UniProtKB-KW
  3. viral nucleocapsid Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, Helical capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 258258NucleoproteinPRO_0000222005Add
BLAST

Family & Domainsi

Sequence similaritiesi

Family and domain databases

InterProiIPR002517. Tospo_nucleocap.
[Graphical view]
PfamiPF01533. Tospo_nucleocap. 1 hit.
[Graphical view]
PIRSFiPIRSF003948. N_TospoV. 1 hit.
ProDomiPD003056. Tospo_nucleocap. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

P36294-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSKVKLTKEN IVSLLTQSED VEFEEDQNQV AFNFKTFCQE NLDLIKKMSI
60 70 80 90 100
TSCLTFLKNR QSIMKVVKQS DFTFGKVTIK KNSERVEAKD MTFRRLDSMI
110 120 130 140 150
RVKLIEETAN NENLAIIKAK IASHPLVQAY GLPLDDAKSV RLAIMLGGSI
160 170 180 190 200
PLIASVDSLE MISVVLAIYQ DSQVQELGIE PTKYNTKEAL GKVCTVLKSK
210 220 230 240 250
GFTMDDAQDN KGKEYAKILS SCNPNAKGSI AMDYYSDNLE KFYEMFGVKK

EAKIAGVA
Length:258
Mass (Da):28,852
Last modified:June 1, 1994 - v1
Checksum:i0B2B694238755A96
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
S54327 Genomic RNA. Translation: AAB25255.2.
PIRiJQ1876.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
S54327 Genomic RNA. Translation: AAB25255.2.
PIRiJQ1876.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

InterProiIPR002517. Tospo_nucleocap.
[Graphical view]
PfamiPF01533. Tospo_nucleocap. 1 hit.
[Graphical view]
PIRSFiPIRSF003948. N_TospoV. 1 hit.
ProDomiPD003056. Tospo_nucleocap. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Publicationsi

  1. "Classification of tospoviruses based on phylogeny of nucleoprotein gene sequences."
    de Avila A.C., de Haan P., Kormelink R., Resende R.O., Goldbach R.W., Peters D.
    J. Gen. Virol. 74:153-159(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Entry informationi

Entry nameiNCAP_TSWVS
AccessioniPrimary (citable) accession number: P36294
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 1, 1994
Last sequence update: June 1, 1994
Last modified: February 4, 2015
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.