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P36293 (NCAP_TSWV3) Reviewed, UniProtKB/Swiss-Prot

Last modified October 16, 2013. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Nucleoprotein
Alternative name(s):
Nucleocapsid protein
Short name=Protein N
Gene names
Name:N
OrganismTomato spotted wilt virus (strain Brazilian Br-03) (TSWV) (Tomato chlorotic spot virus)
Taxonomic identifier12851 [NCBI]
Taxonomic lineageVirusesssRNA negative-strand virusesBunyaviridaeTospovirus
Virus hostFrankliniella occidentalis (Western flower thrips) [TaxID: 133901]
Scirtothrips dorsalis [TaxID: 163899]
Solanum lycopersicum (Tomato) (Lycopersicon esculentum) [TaxID: 4081]
Thrips tabaci [TaxID: 161014]

Protein attributes

Sequence length258 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Encapsidates the RNA.

Subcellular location

Virion Potential.

Sequence similarities

Belongs to the tospovirus nucleocapsid protein family.

Ontologies

Keywords
   Cellular componentCapsid protein
Helical capsid protein
Virion
   LigandRNA-binding
Viral nucleoprotein
   Molecular functionRibonucleoprotein
Gene Ontology (GO)
   Cellular_componenthelical viral capsid

Inferred from electronic annotation. Source: UniProtKB-KW

ribonucleoprotein complex

Inferred from electronic annotation. Source: UniProtKB-KW

viral nucleocapsid

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 258258Nucleoprotein
PRO_0000222002

Sequences

Sequence LengthMass (Da)Tools
P36293 [UniParc].

Last modified June 1, 1994. Version 1.
Checksum: 2AD901104504556F

FASTA25828,677
        10         20         30         40         50         60 
MSKVKLTREN IISLLTQAGE IEFEEDQIKA TFNFEDFCGE NLDSIKKMSI TSCLTFLKNR 

        70         80         90        100        110        120 
QSIMKVVNLC DFTFGKITIK KNSGRVGAND MTFRRLDSMI RVKLIEETGK AENLAIIKSK 

       130        140        150        160        170        180 
IASHPLVQAY GLPLTDAKSV RLAIMLGGSI PLIASVDSFE MISIILAIYQ DAKYKDLGIE 

       190        200        210        220        230        240 
PSKYNTKEAL GKVCTVLKSK GFTMDEEQVQ KGKEYATILS SCNPNAKGSI AMEHYSEHLD 

       250 
KFYAMFGVRK EAKISGVA 

« Hide

References

[1]"Classification of tospoviruses based on phylogeny of nucleoprotein gene sequences."
de Avila A.C., de Haan P., Kormelink R., Resende R.O., Goldbach R.W., Peters D.
J. Gen. Virol. 74:153-159(1993) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
S54325 Genomic RNA. Translation: AAB25256.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

InterProIPR002517. Tospo_nucleocap.
[Graphical view]
PfamPF01533. Tospo_nucleocap. 1 hit.
[Graphical view]
PIRSFPIRSF003948. N_TospoV. 1 hit.
ProDomPD003056. Tospo_nucleocap. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetSearch...

Entry information

Entry nameNCAP_TSWV3
AccessionPrimary (citable) accession number: P36293
Entry history
Integrated into UniProtKB/Swiss-Prot: June 1, 1994
Last sequence update: June 1, 1994
Last modified: October 16, 2013
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families