Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

P36289 (VP2_SMSV4) Reviewed, UniProtKB/Swiss-Prot

Last modified May 29, 2013. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Protein VP2
Alternative name(s):
Minor capsid protein
Gene names
ORF Names:ORF3
OrganismSan Miguel sea lion virus serotype 4 (SMSV-4) (SMSV serotype 4)
Taxonomic identifier36407 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stageCaliciviridaeVesivirus
Virus hostOtariidae (fur seals & sea lions) [TaxID: 9702]

Protein attributes

Sequence length110 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Minor structural protein present in one or two copies per virion. Does not seem to play a role in capsid assembly, but is essential for production of infectious virus By similarity.

Subunit structure

May interact with capsid protein By similarity.

Subcellular location

Virion. Host cytoplasm By similarity.

Miscellaneous

Translated by a ribosomal terminaition-reinitiation process from the bicistronic mRNA coding for VP1 and VP2.

Sequence similarities

Belongs to the vesivirus VP2 protein family.

Ontologies

Keywords
   Cellular componentHost cytoplasm
Virion
Gene Ontology (GO)
   Cellular_componenthost cell cytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

virion

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 110110Protein VP2
PRO_0000100127

Sequences

Sequence LengthMass (Da)Tools
P36289 [UniParc].

Last modified June 1, 1994. Version 1.
Checksum: 14255D593827418E

FASTA11012,566
        10         20         30         40         50         60 
MNYANFGLDF LNSVANAVVE GKKLDLASKG LQLKSRALDT ERAFNYDRLA FEKHKFETNN 

        70         80         90        100        110 
DLKIYGDAMR ISALRAAGLR INPYSNGRQI YQDEADLANL HSYYSFYKTD 

« Hide

References

[1]"Nucleotide sequence of the capsid protein gene of two serotypes of San Miguel sea lion virus: identification of conserved and non-conserved amino acid sequences among calicivirus capsid proteins."
Neill J.D.
Virus Res. 24:211-222(1992) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
M87482 Genomic RNA. Translation: AAA16221.1.
PIRD48562.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

InterProIPR007996. Vesivirus_VP2.
[Graphical view]
PfamPF05332. DUF743. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameVP2_SMSV4
AccessionPrimary (citable) accession number: P36289
Entry history
Integrated into UniProtKB/Swiss-Prot: June 1, 1994
Last sequence update: June 1, 1994
Last modified: May 29, 2013
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families