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P36288

- VP2_SMSV1

UniProt

P36288 - VP2_SMSV1

Protein

Protein VP2

Gene

ORF3

Organism
San Miguel sea lion virus serotype 1 (SMSV-1) (SMSV serotype 1)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
  1. Functioni

    Minor structural protein present in one or two copies per virion. Does not seem to play a role in capsid assembly, but is essential for production of infectious virus By similarity.By similarity

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Protein VP2
    Alternative name(s):
    Minor capsid protein
    Gene namesi
    ORF Names:ORF3
    OrganismiSan Miguel sea lion virus serotype 1 (SMSV-1) (SMSV serotype 1)
    Taxonomic identifieri36406 [NCBI]
    Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageCaliciviridaeVesivirus
    Virus hostiOtariidae (fur seals & sea lions) [TaxID: 9702]
    ProteomesiUP000007224: Genome

    Subcellular locationi

    Virion. Host cytoplasm By similarity

    GO - Cellular componenti

    1. host cell cytoplasm Source: UniProtKB-SubCell
    2. virion Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Host cytoplasm, Virion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 110110Protein VP2PRO_0000100126Add
    BLAST

    Interactioni

    Subunit structurei

    May interact with capsid protein.By similarity

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the vesivirus VP2 protein family.Curated

    Family and domain databases

    InterProiIPR007996. Vesivirus_VP2.
    [Graphical view]
    PfamiPF05332. DUF743. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P36288-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNYANFGLEL FKSIADAAYE GKRVELAGKT LALKNRALDT ERDYNYARLA    50
    FEKQRFETNA DLRVNGDLYR MQALRAAGYR LNPFSNGHQI YADEAAAANL 100
    HSYYGFYKTD 110
    Length:110
    Mass (Da):12,589
    Last modified:June 1, 1994 - v1
    Checksum:i04BB56540F1DB8DB
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    M87481 Genomic RNA. Translation: AAA16218.1.
    PIRiB48562.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    M87481 Genomic RNA. Translation: AAA16218.1 .
    PIRi B48562.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Family and domain databases

    InterProi IPR007996. Vesivirus_VP2.
    [Graphical view ]
    Pfami PF05332. DUF743. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Nucleotide sequence of the capsid protein gene of two serotypes of San Miguel sea lion virus: identification of conserved and non-conserved amino acid sequences among calicivirus capsid proteins."
      Neill J.D.
      Virus Res. 24:211-222(1992) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

    Entry informationi

    Entry nameiVP2_SMSV1
    AccessioniPrimary (citable) accession number: P36288
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: June 1, 1994
    Last sequence update: June 1, 1994
    Last modified: October 1, 2014
    This is version 40 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Miscellaneous

    Translated by a ribosomal terminaition-reinitiation process from the bicistronic mRNA coding for VP1 and VP2.

    Keywords - Technical termi

    Complete proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3