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P36144

- RL1D1_YEAST

UniProt

P36144 - RL1D1_YEAST

Protein

Ribosome biogenesis protein UTP30

Gene

UTP30

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 103 (01 Oct 2014)
      Sequence version 1 (01 Jun 1994)
      Previous versions | rss
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    Functioni

    Involved in rRNA-processing and ribosome biosynthesis.1 Publication

    GO - Biological processi

    1. ribosomal small subunit biogenesis Source: SGD
    2. rRNA processing Source: UniProtKB-KW

    Keywords - Biological processi

    Ribosome biogenesis, rRNA processing

    Enzyme and pathway databases

    BioCyciYEAST:G3O-32028-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribosome biogenesis protein UTP30
    Alternative name(s):
    U3 snoRNP-associated protein UTP30
    Gene namesi
    Name:UTP30
    Ordered Locus Names:YKR060W
    OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
    Taxonomic identifieri559292 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
    ProteomesiUP000002311: Chromosome XI

    Organism-specific databases

    CYGDiYKR060w.
    SGDiS000001768. UTP30.

    Subcellular locationi

    Nucleusnucleolus 1 Publication

    GO - Cellular componenti

    1. nucleolus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Nucleus

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 274274Ribosome biogenesis protein UTP30PRO_0000203217Add
    BLAST

    Proteomic databases

    MaxQBiP36144.
    PaxDbiP36144.
    PeptideAtlasiP36144.

    Expressioni

    Gene expression databases

    GenevestigatoriP36144.

    Interactioni

    Subunit structurei

    Component of the 90S pre-ribosomes. Interacts with FAF1.2 Publications

    Protein-protein interaction databases

    BioGridi34191. 56 interactions.
    DIPiDIP-1926N.
    IntActiP36144. 12 interactions.
    MINTiMINT-8285317.
    STRINGi4932.YKR060W.

    Structurei

    3D structure databases

    ProteinModelPortaliP36144.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    eggNOGiNOG316750.
    HOGENOMiHOG000248442.
    KOiK14775.
    OMAiDPSTPYR.
    OrthoDBiEOG7C8GVC.

    Family and domain databases

    InterProiIPR023674. Ribosomal_L1-like.
    IPR028364. Ribosomal_L1/biogenesis.
    [Graphical view]
    PfamiPF00687. Ribosomal_L1. 1 hit.
    [Graphical view]
    SUPFAMiSSF56808. SSF56808. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P36144-1 [UniParc]FASTAAdd to Basket

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    MVESNDIIKS GLAEKALKAL ILQCEENPSL KNDKDIHIII NTGKKMGINR    50
    DNIPRIIPLT KYKLFKPRDL NILLITKDPS ALYRETLTKD EHTSELFKEI 100
    ISVKNLRRRF KGSKLTQLYK DFDLVVADYR VHHLLPEVLG SRFYHGSKKL 150
    PYMIRMSKEV KLKRQQMVEK CDPIYVRAQL RSICKNTSYI PNNDNCLSVR 200
    VGYIQKHSIP EILQNIQDTI NFLTDKSKRP QGGVIKGGII SIFVKTSNST 250
    SLPIYQFSEA RENQKNEDLS DIKL 274
    Length:274
    Mass (Da):31,616
    Last modified:June 1, 1994 - v1
    Checksum:i897F2B8C54CE8030
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Z28285 Genomic DNA. Translation: CAA82139.1.
    AY557907 Genomic DNA. Translation: AAS56233.1.
    BK006944 Genomic DNA. Translation: DAA09211.1.
    PIRiS38136.
    RefSeqiNP_012986.1. NM_001179850.1.

    Genome annotation databases

    EnsemblFungiiYKR060W; YKR060W; YKR060W.
    GeneIDi853934.
    KEGGisce:YKR060W.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Z28285 Genomic DNA. Translation: CAA82139.1 .
    AY557907 Genomic DNA. Translation: AAS56233.1 .
    BK006944 Genomic DNA. Translation: DAA09211.1 .
    PIRi S38136.
    RefSeqi NP_012986.1. NM_001179850.1.

    3D structure databases

    ProteinModelPortali P36144.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 34191. 56 interactions.
    DIPi DIP-1926N.
    IntActi P36144. 12 interactions.
    MINTi MINT-8285317.
    STRINGi 4932.YKR060W.

    Proteomic databases

    MaxQBi P36144.
    PaxDbi P36144.
    PeptideAtlasi P36144.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblFungii YKR060W ; YKR060W ; YKR060W .
    GeneIDi 853934.
    KEGGi sce:YKR060W.

    Organism-specific databases

    CYGDi YKR060w.
    SGDi S000001768. UTP30.

    Phylogenomic databases

    eggNOGi NOG316750.
    HOGENOMi HOG000248442.
    KOi K14775.
    OMAi DPSTPYR.
    OrthoDBi EOG7C8GVC.

    Enzyme and pathway databases

    BioCyci YEAST:G3O-32028-MONOMER.

    Miscellaneous databases

    NextBioi 975309.

    Gene expression databases

    Genevestigatori P36144.

    Family and domain databases

    InterProi IPR023674. Ribosomal_L1-like.
    IPR028364. Ribosomal_L1/biogenesis.
    [Graphical view ]
    Pfami PF00687. Ribosomal_L1. 1 hit.
    [Graphical view ]
    SUPFAMi SSF56808. SSF56808. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete DNA sequence of yeast chromosome XI."
      Dujon B., Alexandraki D., Andre B., Ansorge W., Baladron V., Ballesta J.P.G., Banrevi A., Bolle P.-A., Bolotin-Fukuhara M., Bossier P., Bou G., Boyer J., Buitrago M.J., Cheret G., Colleaux L., Daignan-Fornier B., del Rey F., Dion C.
      , Domdey H., Duesterhoeft A., Duesterhus S., Entian K.-D., Erfle H., Esteban P.F., Feldmann H., Fernandes L., Fobo G.M., Fritz C., Fukuhara H., Gabel C., Gaillon L., Garcia-Cantalejo J.M., Garcia-Ramirez J.J., Gent M.E., Ghazvini M., Goffeau A., Gonzalez A., Grothues D., Guerreiro P., Hegemann J.H., Hewitt N., Hilger F., Hollenberg C.P., Horaitis O., Indge K.J., Jacquier A., James C.M., Jauniaux J.-C., Jimenez A., Keuchel H., Kirchrath L., Kleine K., Koetter P., Legrain P., Liebl S., Louis E.J., Maia e Silva A., Marck C., Monnier A.-L., Moestl D., Mueller S., Obermaier B., Oliver S.G., Pallier C., Pascolo S., Pfeiffer F., Philippsen P., Planta R.J., Pohl F.M., Pohl T.M., Poehlmann R., Portetelle D., Purnelle B., Puzos V., Ramezani Rad M., Rasmussen S.W., Remacha M.A., Revuelta J.L., Richard G.-F., Rieger M., Rodrigues-Pousada C., Rose M., Rupp T., Santos M.A., Schwager C., Sensen C., Skala J., Soares H., Sor F., Stegemann J., Tettelin H., Thierry A., Tzermia M., Urrestarazu L.A., van Dyck L., van Vliet-Reedijk J.C., Valens M., Vandenbol M., Vilela C., Vissers S., von Wettstein D., Voss H., Wiemann S., Xu G., Zimmermann J., Haasemann M., Becker I., Mewes H.-W.
      Nature 369:371-378(1994) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    2. Cited for: GENOME REANNOTATION.
      Strain: ATCC 204508 / S288c.
    3. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    4. "90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors."
      Grandi P., Rybin V., Bassler J., Petfalski E., Strauss D., Marzioch M., Schaefer T., Kuster B., Tschochner H., Tollervey D., Gavin A.-C., Hurt E.
      Mol. Cell 10:105-115(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: IDENTIFICATION IN THE 90S PRE-RIBOSOME, IDENTIFICATION BY MASS SPECTROMETRY.
    5. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
    6. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
    7. "Fcf1p and Fcf2p are novel nucleolar Saccharomyces cerevisiae proteins involved in pre-rRNA processing."
      Rempola B., Karkusiewicz I., Piekarska I., Rytka J.
      Biochem. Biophys. Res. Commun. 346:546-554(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: INTERACTION WITH FAF1.
    8. "The budding yeast rRNA and ribosome biosynthesis (RRB) regulon contains over 200 genes."
      Wade C.H., Umbarger M.A., McAlear M.A.
      Yeast 23:293-306(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: FUNCTION.

    Entry informationi

    Entry nameiRL1D1_YEAST
    AccessioniPrimary (citable) accession number: P36144
    Secondary accession number(s): D6VXC1
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: June 1, 1994
    Last sequence update: June 1, 1994
    Last modified: October 1, 2014
    This is version 103 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programFungal Protein Annotation Program

    Miscellaneousi

    Miscellaneous

    Present with 3060 molecules/cell in log phase SD medium.1 Publication

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. SIMILARITY comments
      Index of protein domains and families
    3. Yeast
      Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
    4. Yeast chromosome XI
      Yeast (Saccharomyces cerevisiae) chromosome XI: entries and gene names

    External Data

    Dasty 3