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Protein

Ribosome biogenesis protein UTP30

Gene

UTP30

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Involved in rRNA-processing and ribosome biosynthesis.1 Publication

Miscellaneous

Present with 3060 molecules/cell in log phase SD medium.1 Publication

GO - Molecular functioni

GO - Biological processi

  • maturation of LSU-rRNA Source: GO_Central
  • maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Source: GO_Central
  • ribosomal small subunit biogenesis Source: SGD

Keywordsi

Biological processRibosome biogenesis, rRNA processing

Enzyme and pathway databases

BioCyciYEAST:G3O-32028-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosome biogenesis protein UTP30
Alternative name(s):
U3 snoRNP-associated protein UTP30
Gene namesi
Name:UTP30
Ordered Locus Names:YKR060W
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
Proteomesi
  • UP000002311 Componenti: Chromosome XI

Organism-specific databases

EuPathDBiFungiDB:YKR060W
SGDiS000001768 UTP30

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002032171 – 274Ribosome biogenesis protein UTP30Add BLAST274

Proteomic databases

MaxQBiP36144
PaxDbiP36144
PRIDEiP36144

PTM databases

iPTMnetiP36144

Interactioni

Subunit structurei

Component of the 90S pre-ribosomes. Interacts with FAF1.2 Publications

Protein-protein interaction databases

BioGridi34191, 93 interactors
DIPiDIP-1926N
IntActiP36144, 16 interactors
MINTiP36144
STRINGi4932.YKR060W

Structurei

Secondary structure

1274
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi12 – 26Combined sources15
Helixi28 – 30Combined sources3
Beta strandi35 – 44Combined sources10
Beta strandi55 – 57Combined sources3
Helixi67 – 69Combined sources3
Beta strandi72 – 79Combined sources8
Helixi81 – 88Combined sources8
Turni91 – 96Combined sources6
Beta strandi98 – 102Combined sources5
Helixi103 – 109Combined sources7
Helixi112 – 116Combined sources5
Beta strandi123 – 128Combined sources6
Helixi129 – 134Combined sources6
Beta strandi152 – 154Combined sources3
Helixi173 – 185Combined sources13
Beta strandi186 – 189Combined sources4
Beta strandi195 – 204Combined sources10
Helixi209 – 223Combined sources15
Helixi226 – 228Combined sources3
Turni229 – 231Combined sources3
Beta strandi239 – 245Combined sources7
Beta strandi247 – 249Combined sources3
Beta strandi252 – 255Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5WLCelectron microscopy3.80SN1-274[»]
5WYJelectron microscopy8.70U51-274[»]
5WYKelectron microscopy4.50U51-274[»]
5YDTelectron microscopy4.50U51-274[»]
5YDUX-ray2.65A/B1-274[»]
ProteinModelPortaliP36144
SMRiP36144
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

HOGENOMiHOG000248442
InParanoidiP36144
KOiK14775
OMAiVFNQIYT
OrthoDBiEOG092C3SSE

Family and domain databases

CDDicd00403 Ribosomal_L1, 1 hit
InterProiView protein in InterPro
IPR023674 Ribosomal_L1-like
IPR028364 Ribosomal_L1/biogenesis
PfamiView protein in Pfam
PF00687 Ribosomal_L1, 1 hit
SUPFAMiSSF56808 SSF56808, 1 hit

Sequencei

Sequence statusi: Complete.

P36144-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVESNDIIKS GLAEKALKAL ILQCEENPSL KNDKDIHIII NTGKKMGINR
60 70 80 90 100
DNIPRIIPLT KYKLFKPRDL NILLITKDPS ALYRETLTKD EHTSELFKEI
110 120 130 140 150
ISVKNLRRRF KGSKLTQLYK DFDLVVADYR VHHLLPEVLG SRFYHGSKKL
160 170 180 190 200
PYMIRMSKEV KLKRQQMVEK CDPIYVRAQL RSICKNTSYI PNNDNCLSVR
210 220 230 240 250
VGYIQKHSIP EILQNIQDTI NFLTDKSKRP QGGVIKGGII SIFVKTSNST
260 270
SLPIYQFSEA RENQKNEDLS DIKL
Length:274
Mass (Da):31,616
Last modified:June 1, 1994 - v1
Checksum:i897F2B8C54CE8030
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z28285 Genomic DNA Translation: CAA82139.1
AY557907 Genomic DNA Translation: AAS56233.1
BK006944 Genomic DNA Translation: DAA09211.1
PIRiS38136
RefSeqiNP_012986.1, NM_001179850.1

Genome annotation databases

EnsemblFungiiYKR060W; YKR060W; YKR060W
GeneIDi853934
KEGGisce:YKR060W

Similar proteinsi

Entry informationi

Entry nameiRL1D1_YEAST
AccessioniPrimary (citable) accession number: P36144
Secondary accession number(s): D6VXC1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 1, 1994
Last sequence update: June 1, 1994
Last modified: March 28, 2018
This is version 133 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

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