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P36144

- RL1D1_YEAST

UniProt

P36144 - RL1D1_YEAST

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Protein

Ribosome biogenesis protein UTP30

Gene

UTP30

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

Involved in rRNA-processing and ribosome biosynthesis.1 Publication

GO - Biological processi

  1. ribosomal small subunit biogenesis Source: SGD
  2. rRNA processing Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Ribosome biogenesis, rRNA processing

Enzyme and pathway databases

BioCyciYEAST:G3O-32028-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosome biogenesis protein UTP30
Alternative name(s):
U3 snoRNP-associated protein UTP30
Gene namesi
Name:UTP30
Ordered Locus Names:YKR060W
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome XI

Organism-specific databases

CYGDiYKR060w.
SGDiS000001768. UTP30.

Subcellular locationi

Nucleusnucleolus 1 Publication

GO - Cellular componenti

  1. nucleus Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 274274Ribosome biogenesis protein UTP30PRO_0000203217Add
BLAST

Proteomic databases

MaxQBiP36144.
PaxDbiP36144.
PeptideAtlasiP36144.

Expressioni

Gene expression databases

GenevestigatoriP36144.

Interactioni

Subunit structurei

Component of the 90S pre-ribosomes. Interacts with FAF1.2 Publications

Protein-protein interaction databases

BioGridi34191. 57 interactions.
DIPiDIP-1926N.
IntActiP36144. 12 interactions.
MINTiMINT-8285317.
STRINGi4932.YKR060W.

Structurei

3D structure databases

ProteinModelPortaliP36144.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiNOG316750.
HOGENOMiHOG000248442.
InParanoidiP36144.
KOiK14775.
OMAiDPSTPYR.
OrthoDBiEOG7C8GVC.

Family and domain databases

InterProiIPR023674. Ribosomal_L1-like.
IPR028364. Ribosomal_L1/biogenesis.
[Graphical view]
PfamiPF00687. Ribosomal_L1. 1 hit.
[Graphical view]
SUPFAMiSSF56808. SSF56808. 1 hit.

Sequencei

Sequence statusi: Complete.

P36144-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MVESNDIIKS GLAEKALKAL ILQCEENPSL KNDKDIHIII NTGKKMGINR
60 70 80 90 100
DNIPRIIPLT KYKLFKPRDL NILLITKDPS ALYRETLTKD EHTSELFKEI
110 120 130 140 150
ISVKNLRRRF KGSKLTQLYK DFDLVVADYR VHHLLPEVLG SRFYHGSKKL
160 170 180 190 200
PYMIRMSKEV KLKRQQMVEK CDPIYVRAQL RSICKNTSYI PNNDNCLSVR
210 220 230 240 250
VGYIQKHSIP EILQNIQDTI NFLTDKSKRP QGGVIKGGII SIFVKTSNST
260 270
SLPIYQFSEA RENQKNEDLS DIKL
Length:274
Mass (Da):31,616
Last modified:June 1, 1994 - v1
Checksum:i897F2B8C54CE8030
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
Z28285 Genomic DNA. Translation: CAA82139.1.
AY557907 Genomic DNA. Translation: AAS56233.1.
BK006944 Genomic DNA. Translation: DAA09211.1.
PIRiS38136.
RefSeqiNP_012986.1. NM_001179850.1.

Genome annotation databases

EnsemblFungiiYKR060W; YKR060W; YKR060W.
GeneIDi853934.
KEGGisce:YKR060W.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
Z28285 Genomic DNA. Translation: CAA82139.1 .
AY557907 Genomic DNA. Translation: AAS56233.1 .
BK006944 Genomic DNA. Translation: DAA09211.1 .
PIRi S38136.
RefSeqi NP_012986.1. NM_001179850.1.

3D structure databases

ProteinModelPortali P36144.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 34191. 57 interactions.
DIPi DIP-1926N.
IntActi P36144. 12 interactions.
MINTi MINT-8285317.
STRINGi 4932.YKR060W.

Proteomic databases

MaxQBi P36144.
PaxDbi P36144.
PeptideAtlasi P36144.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii YKR060W ; YKR060W ; YKR060W .
GeneIDi 853934.
KEGGi sce:YKR060W.

Organism-specific databases

CYGDi YKR060w.
SGDi S000001768. UTP30.

Phylogenomic databases

eggNOGi NOG316750.
HOGENOMi HOG000248442.
InParanoidi P36144.
KOi K14775.
OMAi DPSTPYR.
OrthoDBi EOG7C8GVC.

Enzyme and pathway databases

BioCyci YEAST:G3O-32028-MONOMER.

Miscellaneous databases

NextBioi 975309.

Gene expression databases

Genevestigatori P36144.

Family and domain databases

InterProi IPR023674. Ribosomal_L1-like.
IPR028364. Ribosomal_L1/biogenesis.
[Graphical view ]
Pfami PF00687. Ribosomal_L1. 1 hit.
[Graphical view ]
SUPFAMi SSF56808. SSF56808. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete DNA sequence of yeast chromosome XI."
    Dujon B., Alexandraki D., Andre B., Ansorge W., Baladron V., Ballesta J.P.G., Banrevi A., Bolle P.-A., Bolotin-Fukuhara M., Bossier P., Bou G., Boyer J., Buitrago M.J., Cheret G., Colleaux L., Daignan-Fornier B., del Rey F., Dion C.
    , Domdey H., Duesterhoeft A., Duesterhus S., Entian K.-D., Erfle H., Esteban P.F., Feldmann H., Fernandes L., Fobo G.M., Fritz C., Fukuhara H., Gabel C., Gaillon L., Garcia-Cantalejo J.M., Garcia-Ramirez J.J., Gent M.E., Ghazvini M., Goffeau A., Gonzalez A., Grothues D., Guerreiro P., Hegemann J.H., Hewitt N., Hilger F., Hollenberg C.P., Horaitis O., Indge K.J., Jacquier A., James C.M., Jauniaux J.-C., Jimenez A., Keuchel H., Kirchrath L., Kleine K., Koetter P., Legrain P., Liebl S., Louis E.J., Maia e Silva A., Marck C., Monnier A.-L., Moestl D., Mueller S., Obermaier B., Oliver S.G., Pallier C., Pascolo S., Pfeiffer F., Philippsen P., Planta R.J., Pohl F.M., Pohl T.M., Poehlmann R., Portetelle D., Purnelle B., Puzos V., Ramezani Rad M., Rasmussen S.W., Remacha M.A., Revuelta J.L., Richard G.-F., Rieger M., Rodrigues-Pousada C., Rose M., Rupp T., Santos M.A., Schwager C., Sensen C., Skala J., Soares H., Sor F., Stegemann J., Tettelin H., Thierry A., Tzermia M., Urrestarazu L.A., van Dyck L., van Vliet-Reedijk J.C., Valens M., Vandenbol M., Vilela C., Vissers S., von Wettstein D., Voss H., Wiemann S., Xu G., Zimmermann J., Haasemann M., Becker I., Mewes H.-W.
    Nature 369:371-378(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  2. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  3. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  4. "90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors."
    Grandi P., Rybin V., Bassler J., Petfalski E., Strauss D., Marzioch M., Schaefer T., Kuster B., Tschochner H., Tollervey D., Gavin A.-C., Hurt E.
    Mol. Cell 10:105-115(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION IN THE 90S PRE-RIBOSOME, IDENTIFICATION BY MASS SPECTROMETRY.
  5. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
  6. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
  7. "Fcf1p and Fcf2p are novel nucleolar Saccharomyces cerevisiae proteins involved in pre-rRNA processing."
    Rempola B., Karkusiewicz I., Piekarska I., Rytka J.
    Biochem. Biophys. Res. Commun. 346:546-554(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH FAF1.
  8. "The budding yeast rRNA and ribosome biosynthesis (RRB) regulon contains over 200 genes."
    Wade C.H., Umbarger M.A., McAlear M.A.
    Yeast 23:293-306(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION.

Entry informationi

Entry nameiRL1D1_YEAST
AccessioniPrimary (citable) accession number: P36144
Secondary accession number(s): D6VXC1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 1, 1994
Last sequence update: June 1, 1994
Last modified: October 29, 2014
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 3060 molecules/cell in log phase SD medium.1 Publication

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families
  3. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  4. Yeast chromosome XI
    Yeast (Saccharomyces cerevisiae) chromosome XI: entries and gene names

External Data

Dasty 3