Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

P36093

- PHD1_YEAST

UniProt

P36093 - PHD1_YEAST

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

Putative transcription factor PHD1

Gene

PHD1

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

Putative transcription factor that functions in pseudohyphal growth.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi220 – 24122H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding transcription factor activity Source: SGD

GO - Biological processi

  1. positive regulation of transcription from RNA polymerase II promoter Source: SGD
  2. pseudohyphal growth Source: SGD
  3. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciYEAST:G3O-31844-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative transcription factor PHD1
Gene namesi
Name:PHD1
Ordered Locus Names:YKL043W
ORF Names:YKL256
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome XI

Organism-specific databases

CYGDiYKL043w.
SGDiS000001526. PHD1.

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: SGD
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 366366Putative transcription factor PHD1PRO_0000058377Add
BLAST

Proteomic databases

MaxQBiP36093.
PaxDbiP36093.

Expressioni

Gene expression databases

GenevestigatoriP36093.

Interactioni

Protein-protein interaction databases

BioGridi34089. 40 interactions.
DIPiDIP-4868N.
IntActiP36093. 2 interactions.
MINTiMINT-495993.

Structurei

3D structure databases

ProteinModelPortaliP36093.
SMRiP36093. Positions 186-281.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini186 – 292107HTH APSES-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the EFG1/PHD1/stuA family.Curated
Contains 1 HTH APSES-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiNOG41372.
GeneTreeiENSGT00530000067611.
InParanoidiP36093.
OMAiHEIATEI.
OrthoDBiEOG7K9KD5.

Family and domain databases

Gene3Di3.10.260.10. 1 hit.
InterProiIPR018004. KilA_N/APSES_HTH.
IPR003163. Tscrpt_reg_HTH_APSES-type.
[Graphical view]
PfamiPF04383. KilA-N. 1 hit.
[Graphical view]
SUPFAMiSSF54616. SSF54616. 1 hit.
PROSITEiPS51299. HTH_APSES. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P36093-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MYHVPEMRLH YPLVNTQSNA AITPTRSYDN TLPSFNELSH QSTINLPFVQ
60 70 80 90 100
RETPNAYANV AQLATSPTQA KSGYYCRYYA VPFPTYPQQP QSPYQQAVLP
110 120 130 140 150
YATIPNSNFQ PSSFPVMAVM PPEVQFDGSF LNTLHPHTEL PPIIQNTNDT
160 170 180 190 200
SVARPNNLKS IAAASPTVTA TTRTPGVSST SVLKPRVITT MWEDENTICY
210 220 230 240 250
QVEANGISVV RRADNNMING TKLLNVTKMT RGRRDGILRS EKVREVVKIG
260 270 280 290 300
SMHLKGVWIP FERAYILAQR EQILDHLYPL FVKDIESIVD ARKPSNKASL
310 320 330 340 350
TPKSSPAPIK QEPSDNKHEI ATEIKPKSID ALSNGASTQG AGELPHLKIN
360
HIDTEAQTSR AKNELS
Length:366
Mass (Da):40,646
Last modified:June 1, 1994 - v1
Checksum:i22B6FA0D505D8654
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U05241 Unassigned DNA. Translation: AAA18358.1.
X71621 Genomic DNA. Translation: CAA50629.1.
Z28043 Genomic DNA. Translation: CAA81878.1.
AY557923 Genomic DNA. Translation: AAS56249.1.
AY949939 Genomic DNA. Translation: AAY27341.1.
AY949940 Genomic DNA. Translation: AAY27342.1.
AY949941 Genomic DNA. Translation: AAY27343.1.
AY949942 Genomic DNA. Translation: AAY27344.1.
AY949943 Genomic DNA. Translation: AAY27345.1.
AY949944 Genomic DNA. Translation: AAY27346.1.
AY949945 Genomic DNA. Translation: AAY27347.1.
AY949946 Genomic DNA. Translation: AAY27348.1.
AY949947 Genomic DNA. Translation: AAY27349.1.
AY949948 Genomic DNA. Translation: AAY27350.1.
BK006944 Genomic DNA. Translation: DAA09113.1.
PIRiS37864.
RefSeqiNP_012881.1. NM_001179609.1.

Genome annotation databases

EnsemblFungiiYKL043W; YKL043W; YKL043W.
GeneIDi853823.
KEGGisce:YKL043W.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U05241 Unassigned DNA. Translation: AAA18358.1 .
X71621 Genomic DNA. Translation: CAA50629.1 .
Z28043 Genomic DNA. Translation: CAA81878.1 .
AY557923 Genomic DNA. Translation: AAS56249.1 .
AY949939 Genomic DNA. Translation: AAY27341.1 .
AY949940 Genomic DNA. Translation: AAY27342.1 .
AY949941 Genomic DNA. Translation: AAY27343.1 .
AY949942 Genomic DNA. Translation: AAY27344.1 .
AY949943 Genomic DNA. Translation: AAY27345.1 .
AY949944 Genomic DNA. Translation: AAY27346.1 .
AY949945 Genomic DNA. Translation: AAY27347.1 .
AY949946 Genomic DNA. Translation: AAY27348.1 .
AY949947 Genomic DNA. Translation: AAY27349.1 .
AY949948 Genomic DNA. Translation: AAY27350.1 .
BK006944 Genomic DNA. Translation: DAA09113.1 .
PIRi S37864.
RefSeqi NP_012881.1. NM_001179609.1.

3D structure databases

ProteinModelPortali P36093.
SMRi P36093. Positions 186-281.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 34089. 40 interactions.
DIPi DIP-4868N.
IntActi P36093. 2 interactions.
MINTi MINT-495993.

Proteomic databases

MaxQBi P36093.
PaxDbi P36093.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii YKL043W ; YKL043W ; YKL043W .
GeneIDi 853823.
KEGGi sce:YKL043W.

Organism-specific databases

CYGDi YKL043w.
SGDi S000001526. PHD1.

Phylogenomic databases

eggNOGi NOG41372.
GeneTreei ENSGT00530000067611.
InParanoidi P36093.
OMAi HEIATEI.
OrthoDBi EOG7K9KD5.

Enzyme and pathway databases

BioCyci YEAST:G3O-31844-MONOMER.

Miscellaneous databases

NextBioi 975008.

Gene expression databases

Genevestigatori P36093.

Family and domain databases

Gene3Di 3.10.260.10. 1 hit.
InterProi IPR018004. KilA_N/APSES_HTH.
IPR003163. Tscrpt_reg_HTH_APSES-type.
[Graphical view ]
Pfami PF04383. KilA-N. 1 hit.
[Graphical view ]
SUPFAMi SSF54616. SSF54616. 1 hit.
PROSITEi PS51299. HTH_APSES. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Induction of pseudohyphal growth by overexpression of PHD1, a Saccharomyces cerevisiae gene related to transcriptional regulators of fungal development."
    Gimeno C.J., Fink G.R.
    Mol. Cell. Biol. 14:2100-2112(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: S288c / YPH1.
  2. "The sequence of a 17.5 kb DNA fragment on the left arm of yeast chromosome XI identifies the protein kinase gene ELM1, the DNA primase gene PRI2, a new gene encoding a putative histone and seven new open reading frames."
    Purnelle B., Tettelin H., van Dyck L., Skala J., Goffeau A.
    Yeast 9:1379-1384(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  3. "Complete DNA sequence of yeast chromosome XI."
    Dujon B., Alexandraki D., Andre B., Ansorge W., Baladron V., Ballesta J.P.G., Banrevi A., Bolle P.-A., Bolotin-Fukuhara M., Bossier P., Bou G., Boyer J., Buitrago M.J., Cheret G., Colleaux L., Daignan-Fornier B., del Rey F., Dion C.
    , Domdey H., Duesterhoeft A., Duesterhus S., Entian K.-D., Erfle H., Esteban P.F., Feldmann H., Fernandes L., Fobo G.M., Fritz C., Fukuhara H., Gabel C., Gaillon L., Garcia-Cantalejo J.M., Garcia-Ramirez J.J., Gent M.E., Ghazvini M., Goffeau A., Gonzalez A., Grothues D., Guerreiro P., Hegemann J.H., Hewitt N., Hilger F., Hollenberg C.P., Horaitis O., Indge K.J., Jacquier A., James C.M., Jauniaux J.-C., Jimenez A., Keuchel H., Kirchrath L., Kleine K., Koetter P., Legrain P., Liebl S., Louis E.J., Maia e Silva A., Marck C., Monnier A.-L., Moestl D., Mueller S., Obermaier B., Oliver S.G., Pallier C., Pascolo S., Pfeiffer F., Philippsen P., Planta R.J., Pohl F.M., Pohl T.M., Poehlmann R., Portetelle D., Purnelle B., Puzos V., Ramezani Rad M., Rasmussen S.W., Remacha M.A., Revuelta J.L., Richard G.-F., Rieger M., Rodrigues-Pousada C., Rose M., Rupp T., Santos M.A., Schwager C., Sensen C., Skala J., Soares H., Sor F., Stegemann J., Tettelin H., Thierry A., Tzermia M., Urrestarazu L.A., van Dyck L., van Vliet-Reedijk J.C., Valens M., Vandenbol M., Vilela C., Vissers S., von Wettstein D., Voss H., Wiemann S., Xu G., Zimmermann J., Haasemann M., Becker I., Mewes H.-W.
    Nature 369:371-378(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  4. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  5. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  6. "Population structure of the wine yeast Saccharomyces cerevisiae."
    Townsend J.P., Aa E., Taylor J.W.
    Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 76625 / YPH499, YPS396, YPS400, YPS598, YPS600, YPS602, YPS604, YPS606, YPS608 and YPS610.
  7. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiPHD1_YEAST
AccessioniPrimary (citable) accession number: P36093
Secondary accession number(s): D6VXP3, Q2VQ88
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 1, 1994
Last sequence update: June 1, 1994
Last modified: October 29, 2014
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 1420 molecules/cell in log phase SD medium.1 Publication

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  3. Yeast chromosome XI
    Yeast (Saccharomyces cerevisiae) chromosome XI: entries and gene names

External Data

Dasty 3