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P36015 (YKT6_YEAST) Reviewed, UniProtKB/Swiss-Prot

Last modified December 14, 2011. Version 120. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (4) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Synaptobrevin homolog YKT6

EC=2.3.1.-
Gene names
Name:YKT6
Ordered Locus Names:YKL196C
OrganismSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifier559292 [NCBI]
Taxonomic lineageEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces

Protein attributes

Sequence length200 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Subcellular location

Cell membrane; Lipid-anchor; Cytoplasmic side Potential.

Sequence similarities

Belongs to the synaptobrevin family.

Contains 1 longin domain.

Contains 1 v-SNARE coiled-coil homology domain.

Binary interactions

With

Entry

#Exp.

IntAct

Notes

PEP12P328542EBI-26982,EBI-13098
VTI1Q043386EBI-26982,EBI-20519

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 197197Synaptobrevin homolog YKT6
PRO_0000206781
Propeptide198 – 2003Removed in mature form By similarity
PRO_0000396675

Regions

Domain7 – 129123Longin
Domain140 – 20061v-SNARE coiled-coil homology

Amino acid modifications

Modified residue1581Phosphothreonine Ref.4 Ref.6
Modified residue1761Phosphoserine Ref.6
Modified residue1781Phosphoserine Ref.5 Ref.6
Modified residue1801Phosphothreonine Ref.6
Modified residue1821Phosphoserine Ref.5 Ref.6
Modified residue1971Cysteine methyl ester By similarity
Lipidation1961S-palmitoyl cysteine By similarity
Lipidation1971S-farnesyl cysteine By similarity

Secondary structure

......................... 200
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P36015 [UniParc].

Last modified June 1, 1994. Version 1.
Checksum: 9BA0E47ED87B096D

FASTA20022,707
        10         20         30         40         50         60 
MRIYYIGVFR SGGEKALELS EVKDLSQFGF FERSSVGQFM TFFAETVASR TGAGQRQSIE 

        70         80         90        100        110        120 
EGNYIGHVYA RSEGICGVLI TDKEYPVRPA YTLLNKILDE YLVAHPKEEW ADVTETNDAL 

       130        140        150        160        170        180 
KMKQLDTYIS KYQDPSQADA IMKVQQELDE TKIVLHKTIE NVLQRGEKLD NLVDKSESLT 

       190        200 
ASSKMFYKQA KKSNSCCIIM 

« Hide

References

« Hide 'large scale' references
[1]"Complete DNA sequence of yeast chromosome XI."
Dujon B., Alexandraki D., Andre B., Ansorge W., Baladron V., Ballesta J.P.G., Banrevi A., Bolle P.-A., Bolotin-Fukuhara M., Bossier P., Bou G., Boyer J., Buitrago M.J., Cheret G., Colleaux L., Daignan-Fornier B., del Rey F., Dion C. expand/collapse author list , Domdey H., Duesterhoeft A., Duesterhus S., Entian K.-D., Erfle H., Esteban P.F., Feldmann H., Fernandes L., Fobo G.M., Fritz C., Fukuhara H., Gabel C., Gaillon L., Garcia-Cantalejo J.M., Garcia-Ramirez J.J., Gent M.E., Ghazvini M., Goffeau A., Gonzalez A., Grothues D., Guerreiro P., Hegemann J.H., Hewitt N., Hilger F., Hollenberg C.P., Horaitis O., Indge K.J., Jacquier A., James C.M., Jauniaux J.-C., Jimenez A., Keuchel H., Kirchrath L., Kleine K., Koetter P., Legrain P., Liebl S., Louis E.J., Maia e Silva A., Marck C., Monnier A.-L., Moestl D., Mueller S., Obermaier B., Oliver S.G., Pallier C., Pascolo S., Pfeiffer F., Philippsen P., Planta R.J., Pohl F.M., Pohl T.M., Poehlmann R., Portetelle D., Purnelle B., Puzos V., Ramezani Rad M., Rasmussen S.W., Remacha M.A., Revuelta J.L., Richard G.-F., Rieger M., Rodrigues-Pousada C., Rose M., Rupp T., Santos M.A., Schwager C., Sensen C., Skala J., Soares H., Sor F., Stegemann J., Tettelin H., Thierry A., Tzermia M., Urrestarazu L.A., van Dyck L., van Vliet-Reedijk J.C., Valens M., Vandenbol M., Vilela C., Vissers S., von Wettstein D., Voss H., Wiemann S., Xu G., Zimmermann J., Haasemann M., Becker I., Mewes H.-W.
Nature 369:371-378(1994) [PubMed: 8196765] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 96604 / S288c / FY1679.
[2]Saccharomyces Genome Database
Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: ATCC 204508 / S288c.
[3]"Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae."
Hu Y., Rolfs A., Bhullar B., Murthy T.V.S., Zhu C., Berger M.F., Camargo A.A., Kelley F., McCarron S., Jepson D., Richardson A., Raphael J., Moreira D., Taycher E., Zuo D., Mohr S., Kane M.F., Williamson J. expand/collapse author list , Simpson A.J.G., Bulyk M.L., Harlow E., Marsischky G., Kolodner R.D., LaBaer J.
Genome Res. 17:536-543(2007) [PubMed: 17322287] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: ATCC 204508 / S288c.
[4]"Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae."
Li X., Gerber S.A., Rudner A.D., Beausoleil S.A., Haas W., Villen J., Elias J.E., Gygi S.P.
J. Proteome Res. 6:1190-1197(2007) [PubMed: 17330950] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-158, MASS SPECTROMETRY.
Strain: ADR376.
[5]"Proteome-wide identification of in vivo targets of DNA damage checkpoint kinases."
Smolka M.B., Albuquerque C.P., Chen S.H., Zhou H.
Proc. Natl. Acad. Sci. U.S.A. 104:10364-10369(2007) [PubMed: 17563356] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-178 AND SER-182, MASS SPECTROMETRY.
[6]"A multidimensional chromatography technology for in-depth phosphoproteome analysis."
Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H.
Mol. Cell. Proteomics 7:1389-1396(2008) [PubMed: 18407956] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-158; SER-176; SER-178; THR-180 AND SER-182, MASS SPECTROMETRY.
[7]"An autoinhibitory mechanism for nonsyntaxin SNARE proteins revealed by the structure of Ykt6p."
Tochio H., Tsui M.M., Banfield D.K., Zhang M.
Science 293:698-702(2001) [PubMed: 11474112] [Abstract]
Cited for: STRUCTURE BY NMR OF 1-140.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
Z28196 Genomic DNA. Translation: CAA82040.1.
AY558393 Genomic DNA. Translation: AAS56719.1.
BK006944 Genomic DNA. Translation: DAA08970.1.
PIRS38033.
RefSeqNP_012725.1. NM_001179762.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1H8MNMR-A1-140[»]
1IOUNMR-A1-140[»]
3BW6X-ray2.50A1-140[»]
ProteinModelPortalP36015.
SMRP36015. Positions 1-194.
ModBaseSearch...

Protein-protein interaction databases

DIPDIP-2247N.
IntActP36015. 25 interactions.
MINTMINT-646403.
STRINGP36015.

Proteomic databases

PeptideAtlasP36015.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblFungiYKL196C; YKL196C; YKL196C.
GeneID853638.
KEGGsce:YKL196C.
NMPDRfig|4932.3.peg.3702.

Organism-specific databases

CYGDYKL196c.
SGDS000001679. YKT6.

Phylogenomic databases

eggNOGfuNOG07914.
GeneTreeEFGT00050000004851.
HOGENOMHBG324813.
OMAAFYKTAK.
OrthoDBEOG46QB2Q.

Gene expression databases

ArrayExpressP36015.
GenevestigatorP36015.
GermOnlineYKL196C. Saccharomyces cerevisiae.

Family and domain databases

InterProIPR010908. Longin.
IPR011012. Longin-like.
IPR001388. Synaptobrevin.
[Graphical view]
Gene3DG3DSA:3.30.450.50. Longin. 1 hit.
KOK08516.
PfamPF00957. Synaptobrevin. 1 hit.
[Graphical view]
PRINTSPR00219. SYNAPTOBREVN.
SUPFAMSSF64356. Longin_like. 1 hit.
PROSITEPS50859. LONGIN. 1 hit.
PS00417. SYNAPTOBREVIN. 1 hit.
PS50892. V_SNARE. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio974525.

Entry information

Entry nameYKT6_YEAST
AccessionPrimary (citable) accession number: P36015
Secondary accession number(s): D6VX04
Entry history
Integrated into UniProtKB/Swiss-Prot: June 1, 1994
Last sequence update: June 1, 1994
Last modified: December 14, 2011
This is version 120 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Relevant documents

Yeast

Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD

Yeast chromosome XI

Yeast (Saccharomyces cerevisiae) chromosome XI: entries and gene names

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families