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Protein

50S ribosomal protein L33

Gene

rpmG

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Found on the solvent side of the large subunit.
Contacts the E site tRNA.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding, tRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L33
Gene namesi
Name:rpmG
Synonyms:rpl33
Ordered Locus Names:TTHA0250
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00001702572 – 5450S ribosomal protein L33Add BLAST53

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA0250.

Structurei

Secondary structure

154
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi16 – 18Combined sources3
Turni28 – 31Combined sources4
Beta strandi42 – 44Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44R6/Y61-54[»]
1VY4X-ray2.60B6/D61-54[»]
1VY5X-ray2.55B6/D61-54[»]
1VY6X-ray2.90B6/D61-54[»]
1VY7X-ray2.80B6/D61-54[»]
4L47X-ray3.22R6/Y61-54[»]
4L71X-ray3.90R6/Y61-54[»]
4LELX-ray3.90R6/Y61-54[»]
4LFZX-ray3.92R6/Y61-54[»]
4LNTX-ray2.94R6/Y61-54[»]
4LSKX-ray3.48R6/Y61-54[»]
4LT8X-ray3.14R6/Y61-54[»]
4P6FX-ray3.60R6/Y61-54[»]
4P70X-ray3.68R6/Y61-54[»]
4TUAX-ray3.60R6/Y61-54[»]
4TUBX-ray3.60R6/Y61-54[»]
4TUCX-ray3.60R6/Y61-54[»]
4TUDX-ray3.60R6/Y61-54[»]
4TUEX-ray3.50R6/Y61-54[»]
4V4PX-ray5.50625-39[»]
4V4XX-ray5.00B51-54[»]
4V4YX-ray5.50B51-54[»]
4V4ZX-ray4.51B51-54[»]
4V51X-ray2.80B6/D62-54[»]
4V5AX-ray3.50B6/D62-54[»]
4V5CX-ray3.30B6/D61-54[»]
4V5DX-ray3.50B6/D61-54[»]
4V5EX-ray3.45B6/D61-54[»]
4V5FX-ray3.60B6/D61-54[»]
4V5GX-ray3.60B6/D61-54[»]
4V5JX-ray3.10B6/D61-54[»]
4V5KX-ray3.20B6/D61-54[»]
4V5LX-ray3.10B61-54[»]
4V5Melectron microscopy7.80B61-54[»]
4V5Nelectron microscopy7.60B61-54[»]
4V5PX-ray3.10B6/D61-54[»]
4V5QX-ray3.10B6/D61-54[»]
4V5RX-ray3.10B6/D61-54[»]
4V5SX-ray3.10B6/D61-54[»]
4V68electron microscopy6.40B69-53[»]
4V6AX-ray3.10B6/D61-54[»]
4V6FX-ray3.10A6/D61-54[»]
4V6GX-ray3.50B6/D61-54[»]
4V7JX-ray3.30A6/B61-54[»]
4V7KX-ray3.60A6/B61-54[»]
4V7LX-ray3.00B6/D61-54[»]
4V7MX-ray3.45B6/D61-54[»]
4V7WX-ray3.00B6/D61-54[»]
4V7XX-ray3.00B6/D61-54[»]
4V7YX-ray3.00B6/D61-54[»]
4V7ZX-ray3.10B6/D61-54[»]
4V87X-ray3.10A6/D69-53[»]
4V8AX-ray3.20A6/B61-54[»]
4V8BX-ray3.00B6/D61-54[»]
4V8CX-ray3.30A6/B61-54[»]
4V8DX-ray3.00B6/D61-54[»]
4V8EX-ray3.30A6/C61-54[»]
4V8FX-ray3.30A6/D61-54[»]
4V8GX-ray3.00B6/D61-54[»]
4V8HX-ray3.10B6/D61-54[»]
4V8IX-ray2.70B6/D61-54[»]
4V8JX-ray3.90B6/D61-54[»]
4V8NX-ray3.10B6/D61-54[»]
4V8OX-ray3.80B61-54[»]
4V8QX-ray3.10A61-54[»]
4V8UX-ray3.70B6/D61-54[»]
4V8XX-ray3.35B6/D61-54[»]
4V90X-ray2.95B62-54[»]
4V95X-ray3.20B6/D61-54[»]
4V97X-ray3.52B6/D61-54[»]
4V9AX-ray3.30B6/D61-54[»]
4V9BX-ray3.10B6/D61-54[»]
4V9HX-ray2.86B61-54[»]
4V9IX-ray3.30B6/D69-52[»]
4V9RX-ray3.00B6/D61-54[»]
4V9SX-ray3.10B6/D61-54[»]
4W2EX-ray2.9061-54[»]
4W2FX-ray2.40B6/D61-54[»]
4W2GX-ray2.55B6/D61-54[»]
4W2HX-ray2.70B6/D61-54[»]
4W2IX-ray2.70B6/D61-54[»]
4W4GX-ray3.30R6/Y61-54[»]
4WPOX-ray2.80A6/C61-54[»]
4WQ1X-ray3.10K5/O89-53[»]
4WQFX-ray2.80A6/C61-54[»]
4WQRX-ray3.15K5/O81-54[»]
4WQUX-ray2.80A6/C61-54[»]
4WQYX-ray2.80A6/C61-54[»]
4WROX-ray3.05O81-54[»]
4WSDX-ray2.95K5/O81-54[»]
4WT1X-ray3.05K5/O81-54[»]
4WT8X-ray3.40C7/D79-52[»]
4WZDX-ray3.10K5/O81-54[»]
4Y4OX-ray2.3016/261-54[»]
4Y4PX-ray2.5016/261-54[»]
4YPBX-ray3.40R6/Y61-54[»]
4YZVX-ray3.10R6/Y61-54[»]
4Z3SX-ray2.6516/261-54[»]
4Z8CX-ray2.9016/261-54[»]
4ZERX-ray3.1016/262-54[»]
4ZSNX-ray3.60R6/Y61-54[»]
5A9Zelectron microscopy4.70Ac6-54[»]
5AA0electron microscopy5.00Ac6-54[»]
5CZPX-ray3.30R6/Y61-54[»]
5D8BX-ray3.63VB/Z1-54[»]
5DFEX-ray3.10R6/Y61-54[»]
5DOXX-ray3.1016/261-54[»]
5DOYX-ray2.6016/261-54[»]
5F8KX-ray2.8016/262-54[»]
5FDUX-ray2.9016/262-54[»]
5FDVX-ray2.8016/262-54[»]
5HAUX-ray3.0014/241-54[»]
5HCPX-ray2.8916/261-54[»]
5HCQX-ray2.8016/261-54[»]
5HCRX-ray2.8016/261-54[»]
5HD1X-ray2.7016/261-54[»]
5IB7X-ray2.99O81-54[»]
5IMQelectron microscopy3.80x1-54[»]
5IMRelectron microscopy-x1-54[»]
5J30X-ray3.20R6/Y61-54[»]
5J3CX-ray3.04R6/Y61-54[»]
5J4BX-ray2.6016/261-54[»]
5J4CX-ray2.8016/261-54[»]
5J8BX-ray2.6061-54[»]
ProteinModelPortaliP35871.
SMRiP35871.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP35871.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4105WDJ. Bacteria.
COG0267. LUCA.
HOGENOMiHOG000004838.
KOiK02913.
OMAiTECRSNP.
PhylomeDBiP35871.

Family and domain databases

HAMAPiMF_00294. Ribosomal_L33. 1 hit.
InterProiView protein in InterPro
IPR001705. Ribosomal_L33.
IPR018264. Ribosomal_L33_CS.
IPR011332. Ribosomal_zn-bd.
PfamiView protein in Pfam
PF00471. Ribosomal_L33. 1 hit.
SUPFAMiSSF57829. SSF57829. 1 hit.
TIGRFAMsiTIGR01023. rpmG_bact. 1 hit.
PROSITEiView protein in PROSITE
PS00582. RIBOSOMAL_L33. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P35871-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASEVRIKLL LECTECKRRN YATEKNKRNT PNKLELRKYC PWCRKHTVHR

EVKI
Length:54
Mass (Da):6,616
Last modified:January 23, 2007 - v3
Checksum:i13DC56C3247C60CD
GO

Sequence cautioni

The sequence L10348 differs from that shown. Reason: Frameshift at position 45.Curated

Mass spectrometryi

Molecular mass is 6486 Da from positions 2 - 54. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X61957 Genomic DNA. No translation available.
L10348 Genomic DNA. No translation available.
AP008226 Genomic DNA. Translation: BAD70073.1.
RefSeqiWP_008630505.1. NC_006461.1.
YP_143516.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD70073; BAD70073; BAD70073.
GeneIDi3167958.
KEGGittj:TTHA0250.
PATRICifig|300852.9.peg.250.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL33_THET8
AccessioniPrimary (citable) accession number: P35871
Secondary accession number(s): Q5SLP3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 1, 1994
Last sequence update: January 23, 2007
Last modified: June 7, 2017
This is version 135 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families