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P35871 (RL33_THET8) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 107. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L33
Gene names
Name:rpmG
Synonyms:rpl33
Ordered Locus Names:TTHA0250
OrganismThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [Reference proteome] [HAMAP]
Taxonomic identifier300852 [NCBI]
Taxonomic lineageBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus

Protein attributes

Sequence length54 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Found on the solvent side of the large subunit. HAMAP-Rule MF_00294

Contacts the E site tRNA. HAMAP-Rule MF_00294

Subunit structure

Part of the 50S ribosomal subunit.

Sequence similarities

Belongs to the ribosomal protein L33P family.

Mass spectrometry

Molecular mass is 6486 Da from positions 2 - 54. Determined by MALDI. Ref.6

Sequence caution

The sequence L10348 differs from that shown. Reason: Frameshift at position 45.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed Ref.4
Chain2 – 545350S ribosomal protein L33 HAMAP-Rule MF_00294
PRO_0000170257

Secondary structure

........... 54
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P35871 [UniParc].

Last modified January 23, 2007. Version 3.
Checksum: 13DC56C3247C60CD

FASTA546,616
        10         20         30         40         50 
MASEVRIKLL LECTECKRRN YATEKNKRNT PNKLELRKYC PWCRKHTVHR EVKI 

« Hide

References

« Hide 'large scale' references
[1]"Molecular cloning, nucleotide sequence and expression of the tufB gene encoding elongation factor Tu from Thermus thermophilus HB8."
Satoh M., Tanaka T., Kushiro A., Hakoshima T., Tomita K.
FEBS Lett. 288:98-100(1991) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]"Identification of the gene encoding transcription factor NusG of Thermus thermophilus."
Heinrich T., Schroeder W., Erdmann V.A., Hartmann R.K.
J. Bacteriol. 174:7859-7863(1992) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: HB8 / ATCC 27634 / DSM 579.
[3]"Complete genome sequence of Thermus thermophilus HB8."
Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HB8 / ATCC 27634 / DSM 579.
[4]"Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 2-23.
[5]"Identification of genes encoding ribosomal protein L33 from Bacillus licheniformis, Thermus thermophilus and Thermotoga maritima."
Sharp P.M.
Gene 139:135-136(1994) [PubMed] [Europe PMC] [Abstract]
Cited for: IDENTIFICATION.
[6]"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: MASS SPECTROMETRY.
[7]"Crystal structure of the ribosome at 5.5 A resolution."
Yusupov M.M., Yusupova G.Z., Baucom A., Lieberman K., Earnest T.N., Cate J.H.D., Noller H.F.
Science 292:883-896(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE OF THE RIBOSOME.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X61957 Genomic DNA. No translation available.
L10348 Genomic DNA. No translation available.
AP008226 Genomic DNA. Translation: BAD70073.1.
RefSeqYP_143516.1. NC_006461.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1YL3X-ray5.50625-39[»]
2HGJX-ray5.0051-54[»]
2HGQX-ray5.5051-54[»]
2HGUX-ray4.5151-54[»]
2J01X-ray2.8062-54[»]
2J03X-ray2.8062-54[»]
2V47X-ray3.5062-54[»]
2V49X-ray3.5062-54[»]
2WDIX-ray3.3061-54[»]
2WDJX-ray3.3061-54[»]
2WDLX-ray3.5061-54[»]
2WDNX-ray3.5061-54[»]
2WH2X-ray3.4561-54[»]
2WH4X-ray3.4561-54[»]
2WRJX-ray3.6061-54[»]
2WRLX-ray3.6061-54[»]
2WROX-ray3.6061-54[»]
2WRRX-ray3.6061-54[»]
2X9SX-ray3.1061-54[»]
2X9UX-ray3.1061-54[»]
2XG0X-ray3.2061-54[»]
2XG2X-ray3.2061-54[»]
2XQEX-ray3.1061-54[»]
2XTGelectron microscopy7.8061-54[»]
2XUXelectron microscopy7.6061-54[»]
2Y0VX-ray3.1061-54[»]
2Y0XX-ray3.1061-54[»]
2Y0ZX-ray3.1061-54[»]
2Y11X-ray3.1061-54[»]
2Y13X-ray3.1061-54[»]
2Y15X-ray3.1061-54[»]
2Y17X-ray3.1061-54[»]
2Y19X-ray3.1061-54[»]
3FINelectron microscopy6.4069-53[»]
3HUXX-ray3.1061-54[»]
3HUZX-ray3.1061-54[»]
3I8FX-ray3.1061-54[»]
3I8IX-ray3.1061-54[»]
3I9CX-ray3.5061-54[»]
3I9EX-ray3.5061-54[»]
3KIRX-ray3.3061-54[»]
3KITX-ray3.3061-54[»]
3KIWX-ray3.6061-54[»]
3KIYX-ray3.6061-54[»]
3KNIX-ray3.0061-54[»]
3KNKX-ray3.0061-54[»]
3KNMX-ray3.4561-54[»]
3KNOX-ray3.4561-54[»]
3OH5X-ray3.0061-54[»]
3OH7X-ray3.0061-54[»]
3OHJX-ray3.0061-54[»]
3OHKX-ray3.0061-54[»]
3OHZX-ray3.0061-54[»]
3OI1X-ray3.0061-54[»]
3OI3X-ray3.1061-54[»]
3OI5X-ray3.1061-54[»]
3TVEX-ray3.1069-53[»]
3TVHX-ray3.1069-53[»]
3UXQX-ray3.2061-54[»]
3UXRX-ray3.2061-54[»]
3UYEX-ray3.0061-54[»]
3UYGX-ray3.0061-54[»]
3UZ1X-ray3.3061-54[»]
3UZ2X-ray3.3061-54[»]
3UZ8X-ray3.0061-54[»]
3UZ9X-ray3.0061-54[»]
3UZFX-ray3.3061-54[»]
3UZHX-ray3.3061-54[»]
3UZKX-ray3.3061-54[»]
3UZNX-ray3.3061-54[»]
3V23X-ray3.0061-54[»]
3V25X-ray3.0061-54[»]
3V27X-ray3.1061-54[»]
3V29X-ray3.1061-54[»]
3V2DX-ray2.7061-54[»]
3V2FX-ray2.7061-54[»]
3V6WX-ray3.9061-54[»]
3V6XX-ray3.9061-54[»]
3ZN9X-ray3.1061-54[»]
3ZNEX-ray3.1061-54[»]
3ZVPX-ray3.8061-54[»]
4ABSX-ray3.1061-54[»]
4B8GX-ray3.7061-54[»]
4B8IX-ray3.7061-54[»]
4BTDX-ray2.9562-54[»]
4BYCX-ray3.3561-54[»]
4BYEX-ray3.3561-54[»]
4DHAX-ray3.2061-54[»]
4DHCX-ray3.2061-54[»]
4EJBX-ray3.5261-54[»]
4EJCX-ray3.5261-54[»]
4G5LX-ray3.3061-54[»]
4G5NX-ray3.3061-54[»]
4G5UX-ray3.1061-54[»]
4G5WX-ray3.1061-54[»]
4JUXX-ray2.8661-54[»]
4K0MX-ray3.3069-52[»]
4K0QX-ray3.3069-52[»]
4NVVX-ray3.0061-54[»]
4NVXX-ray3.0061-54[»]
4NVZX-ray3.1061-54[»]
4NW1X-ray3.1061-54[»]
ProteinModelPortalP35871.
SMRP35871. Positions 6-54.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING300852.TTHA0250.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD70073; BAD70073; BAD70073.
GeneID3167958.
KEGGttj:TTHA0250.
PATRIC23955447. VBITheThe93045_0250.

Phylogenomic databases

eggNOGCOG0267.
HOGENOMHOG000004838.
KOK02913.
OMALELAKFC.
OrthoDBEOG60KNBM.
PhylomeDBP35871.

Enzyme and pathway databases

BioCycTTHE300852:GH8R-260-MONOMER.

Family and domain databases

HAMAPMF_00294. Ribosomal_L33.
InterProIPR001705. Ribosomal_L33.
IPR018264. Ribosomal_L33_CS.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PfamPF00471. Ribosomal_L33. 1 hit.
[Graphical view]
SUPFAMSSF57829. SSF57829. 1 hit.
TIGRFAMsTIGR01023. rpmG_bact. 1 hit.
PROSITEPS00582. RIBOSOMAL_L33. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceP35871.

Entry information

Entry nameRL33_THET8
AccessionPrimary (citable) accession number: P35871
Secondary accession number(s): Q5SLP3
Entry history
Integrated into UniProtKB/Swiss-Prot: June 1, 1994
Last sequence update: January 23, 2007
Last modified: July 9, 2014
This is version 107 of the entry and version 3 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references