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P35871

- RL33_THET8

UniProt

P35871 - RL33_THET8

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Protein

50S ribosomal protein L33

Gene

rpmG

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at protein leveli

Functioni

Found on the solvent side of the large subunit.
Contacts the E site tRNA.

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-KW
  2. structural constituent of ribosome Source: InterPro
  3. tRNA binding Source: UniProtKB-KW

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding, tRNA-binding

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-260-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L33
Gene namesi
Name:rpmG
Synonyms:rpl33
Ordered Locus Names:TTHA0250
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed1 Publication
Chaini2 – 545350S ribosomal protein L33PRO_0000170257Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA0250.

Structurei

Secondary structure

1
54
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi4 – 1310Combined sources
Turni14 – 163Combined sources
Beta strandi19 – 268Combined sources
Turni27 – 293Combined sources
Beta strandi35 – 406Combined sources
Turni41 – 444Combined sources
Beta strandi45 – 528Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VVMX-ray3.2261-54[»]
1VVOX-ray3.2261-54[»]
1VVQX-ray3.9061-54[»]
1VVSX-ray3.9061-54[»]
1VVUX-ray3.9061-54[»]
1VVWX-ray3.9061-54[»]
1VVYX-ray3.9261-54[»]
1VW0X-ray3.9261-54[»]
1VX9X-ray2.9461-54[»]
1VXJX-ray2.9461-54[»]
1VXLX-ray3.4861-54[»]
1VXNX-ray3.4861-54[»]
1VXQX-ray3.1461-54[»]
1VXTX-ray3.1461-54[»]
1VY1X-ray3.6861-54[»]
1VY3X-ray3.6861-54[»]
1YL3X-ray5.50625-39[»]
2HGJX-ray5.0051-54[»]
2HGQX-ray5.5051-54[»]
2HGUX-ray4.5151-54[»]
2J01X-ray2.8062-54[»]
2J03X-ray2.8062-54[»]
2V47X-ray3.5062-54[»]
2V49X-ray3.5062-54[»]
2WDIX-ray3.3061-54[»]
2WDJX-ray3.3061-54[»]
2WDLX-ray3.5061-54[»]
2WDNX-ray3.5061-54[»]
2WH2X-ray3.4561-54[»]
2WH4X-ray3.4561-54[»]
2WRJX-ray3.6061-54[»]
2WRLX-ray3.6061-54[»]
2WROX-ray3.6061-54[»]
2WRRX-ray3.6061-54[»]
2X9SX-ray3.1061-54[»]
2X9UX-ray3.1061-54[»]
2XG0X-ray3.2061-54[»]
2XG2X-ray3.2061-54[»]
2XQEX-ray3.1061-54[»]
2XTGelectron microscopy7.8061-54[»]
2XUXelectron microscopy7.6061-54[»]
2Y0VX-ray3.1061-54[»]
2Y0XX-ray3.1061-54[»]
2Y0ZX-ray3.1061-54[»]
2Y11X-ray3.1061-54[»]
2Y13X-ray3.1061-54[»]
2Y15X-ray3.1061-54[»]
2Y17X-ray3.1061-54[»]
2Y19X-ray3.1061-54[»]
3FINelectron microscopy6.4069-53[»]
3HUXX-ray3.1061-54[»]
3HUZX-ray3.1061-54[»]
3I8FX-ray3.1061-54[»]
3I8IX-ray3.1061-54[»]
3I9CX-ray3.5061-54[»]
3I9EX-ray3.5061-54[»]
3KIRX-ray3.3061-54[»]
3KITX-ray3.3061-54[»]
3KIWX-ray3.6061-54[»]
3KIYX-ray3.6061-54[»]
3KNIX-ray3.0061-54[»]
3KNKX-ray3.0061-54[»]
3KNMX-ray3.4561-54[»]
3KNOX-ray3.4561-54[»]
3OH5X-ray3.0061-54[»]
3OH7X-ray3.0061-54[»]
3OHJX-ray3.0061-54[»]
3OHKX-ray3.0061-54[»]
3OHZX-ray3.0061-54[»]
3OI1X-ray3.0061-54[»]
3OI3X-ray3.1061-54[»]
3OI5X-ray3.1061-54[»]
3TVEX-ray3.1069-53[»]
3TVHX-ray3.1069-53[»]
3UXQX-ray3.2061-54[»]
3UXRX-ray3.2061-54[»]
3UYEX-ray3.0061-54[»]
3UYGX-ray3.0061-54[»]
3UZ1X-ray3.3061-54[»]
3UZ2X-ray3.3061-54[»]
3UZ8X-ray3.0061-54[»]
3UZ9X-ray3.0061-54[»]
3UZFX-ray3.3061-54[»]
3UZHX-ray3.3061-54[»]
3UZKX-ray3.3061-54[»]
3UZNX-ray3.3061-54[»]
3V23X-ray3.0061-54[»]
3V25X-ray3.0061-54[»]
3V27X-ray3.1061-54[»]
3V29X-ray3.1061-54[»]
3V2DX-ray2.7061-54[»]
3V2FX-ray2.7061-54[»]
3V6WX-ray3.9061-54[»]
3V6XX-ray3.9061-54[»]
3ZN9X-ray3.1061-54[»]
3ZNEX-ray3.1061-54[»]
3ZVPX-ray3.8061-54[»]
4ABSX-ray3.1061-54[»]
4B8GX-ray3.7061-54[»]
4B8IX-ray3.7061-54[»]
4BTDX-ray2.9562-54[»]
4BYCX-ray3.3561-54[»]
4BYEX-ray3.3561-54[»]
4DHAX-ray3.2061-54[»]
4DHCX-ray3.2061-54[»]
4EJBX-ray3.5261-54[»]
4EJCX-ray3.5261-54[»]
4G5LX-ray3.3061-54[»]
4G5NX-ray3.3061-54[»]
4G5UX-ray3.1061-54[»]
4G5WX-ray3.1061-54[»]
4JUXX-ray2.8661-54[»]
4K0MX-ray3.3069-52[»]
4K0QX-ray3.3069-52[»]
4KX0X-ray3.4461-54[»]
4KX2X-ray3.4461-54[»]
4NVVX-ray3.0061-54[»]
4NVXX-ray3.0061-54[»]
4NVZX-ray3.1061-54[»]
4NW1X-ray3.1061-54[»]
4QCNX-ray2.6061-54[»]
4QCPX-ray2.6061-54[»]
4QCRX-ray2.5561-54[»]
4QCTX-ray2.5561-54[»]
4QCVX-ray2.9061-54[»]
4QCXX-ray2.9061-54[»]
4QCZX-ray2.8061-54[»]
4QD1X-ray2.8061-54[»]
4QJSX-ray2.9061-54[»]
4W2BX-ray3.60b1-54[»]
4W2DX-ray3.60b1-54[»]
ProteinModelPortaliP35871.
SMRiP35871. Positions 6-54.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP35871.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L33P family.Curated

Phylogenomic databases

eggNOGiCOG0267.
HOGENOMiHOG000004838.
KOiK02913.
OMAiLELAKFC.
OrthoDBiEOG60KNBM.
PhylomeDBiP35871.

Family and domain databases

HAMAPiMF_00294. Ribosomal_L33.
InterProiIPR001705. Ribosomal_L33.
IPR018264. Ribosomal_L33_CS.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PfamiPF00471. Ribosomal_L33. 1 hit.
[Graphical view]
SUPFAMiSSF57829. SSF57829. 1 hit.
TIGRFAMsiTIGR01023. rpmG_bact. 1 hit.
PROSITEiPS00582. RIBOSOMAL_L33. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P35871-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MASEVRIKLL LECTECKRRN YATEKNKRNT PNKLELRKYC PWCRKHTVHR

EVKI
Length:54
Mass (Da):6,616
Last modified:January 23, 2007 - v3
Checksum:i13DC56C3247C60CD
GO

Sequence cautioni

The sequence L10348 differs from that shown. Reason: Frameshift at position 45. Curated

Mass spectrometryi

Molecular mass is 6486 Da from positions 2 - 54. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X61957 Genomic DNA. No translation available.
L10348 Genomic DNA. No translation available.
AP008226 Genomic DNA. Translation: BAD70073.1.
RefSeqiYP_143516.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD70073; BAD70073; BAD70073.
GeneIDi3167958.
KEGGittj:TTHA0250.
PATRICi23955447. VBITheThe93045_0250.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X61957 Genomic DNA. No translation available.
L10348 Genomic DNA. No translation available.
AP008226 Genomic DNA. Translation: BAD70073.1 .
RefSeqi YP_143516.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VVM X-ray 3.22 6 1-54 [» ]
1VVO X-ray 3.22 6 1-54 [» ]
1VVQ X-ray 3.90 6 1-54 [» ]
1VVS X-ray 3.90 6 1-54 [» ]
1VVU X-ray 3.90 6 1-54 [» ]
1VVW X-ray 3.90 6 1-54 [» ]
1VVY X-ray 3.92 6 1-54 [» ]
1VW0 X-ray 3.92 6 1-54 [» ]
1VX9 X-ray 2.94 6 1-54 [» ]
1VXJ X-ray 2.94 6 1-54 [» ]
1VXL X-ray 3.48 6 1-54 [» ]
1VXN X-ray 3.48 6 1-54 [» ]
1VXQ X-ray 3.14 6 1-54 [» ]
1VXT X-ray 3.14 6 1-54 [» ]
1VY1 X-ray 3.68 6 1-54 [» ]
1VY3 X-ray 3.68 6 1-54 [» ]
1YL3 X-ray 5.50 6 25-39 [» ]
2HGJ X-ray 5.00 5 1-54 [» ]
2HGQ X-ray 5.50 5 1-54 [» ]
2HGU X-ray 4.51 5 1-54 [» ]
2J01 X-ray 2.80 6 2-54 [» ]
2J03 X-ray 2.80 6 2-54 [» ]
2V47 X-ray 3.50 6 2-54 [» ]
2V49 X-ray 3.50 6 2-54 [» ]
2WDI X-ray 3.30 6 1-54 [» ]
2WDJ X-ray 3.30 6 1-54 [» ]
2WDL X-ray 3.50 6 1-54 [» ]
2WDN X-ray 3.50 6 1-54 [» ]
2WH2 X-ray 3.45 6 1-54 [» ]
2WH4 X-ray 3.45 6 1-54 [» ]
2WRJ X-ray 3.60 6 1-54 [» ]
2WRL X-ray 3.60 6 1-54 [» ]
2WRO X-ray 3.60 6 1-54 [» ]
2WRR X-ray 3.60 6 1-54 [» ]
2X9S X-ray 3.10 6 1-54 [» ]
2X9U X-ray 3.10 6 1-54 [» ]
2XG0 X-ray 3.20 6 1-54 [» ]
2XG2 X-ray 3.20 6 1-54 [» ]
2XQE X-ray 3.10 6 1-54 [» ]
2XTG electron microscopy 7.80 6 1-54 [» ]
2XUX electron microscopy 7.60 6 1-54 [» ]
2Y0V X-ray 3.10 6 1-54 [» ]
2Y0X X-ray 3.10 6 1-54 [» ]
2Y0Z X-ray 3.10 6 1-54 [» ]
2Y11 X-ray 3.10 6 1-54 [» ]
2Y13 X-ray 3.10 6 1-54 [» ]
2Y15 X-ray 3.10 6 1-54 [» ]
2Y17 X-ray 3.10 6 1-54 [» ]
2Y19 X-ray 3.10 6 1-54 [» ]
3FIN electron microscopy 6.40 6 9-53 [» ]
3HUX X-ray 3.10 6 1-54 [» ]
3HUZ X-ray 3.10 6 1-54 [» ]
3I8F X-ray 3.10 6 1-54 [» ]
3I8I X-ray 3.10 6 1-54 [» ]
3I9C X-ray 3.50 6 1-54 [» ]
3I9E X-ray 3.50 6 1-54 [» ]
3KIR X-ray 3.30 6 1-54 [» ]
3KIT X-ray 3.30 6 1-54 [» ]
3KIW X-ray 3.60 6 1-54 [» ]
3KIY X-ray 3.60 6 1-54 [» ]
3KNI X-ray 3.00 6 1-54 [» ]
3KNK X-ray 3.00 6 1-54 [» ]
3KNM X-ray 3.45 6 1-54 [» ]
3KNO X-ray 3.45 6 1-54 [» ]
3OH5 X-ray 3.00 6 1-54 [» ]
3OH7 X-ray 3.00 6 1-54 [» ]
3OHJ X-ray 3.00 6 1-54 [» ]
3OHK X-ray 3.00 6 1-54 [» ]
3OHZ X-ray 3.00 6 1-54 [» ]
3OI1 X-ray 3.00 6 1-54 [» ]
3OI3 X-ray 3.10 6 1-54 [» ]
3OI5 X-ray 3.10 6 1-54 [» ]
3TVE X-ray 3.10 6 9-53 [» ]
3TVH X-ray 3.10 6 9-53 [» ]
3UXQ X-ray 3.20 6 1-54 [» ]
3UXR X-ray 3.20 6 1-54 [» ]
3UYE X-ray 3.00 6 1-54 [» ]
3UYG X-ray 3.00 6 1-54 [» ]
3UZ1 X-ray 3.30 6 1-54 [» ]
3UZ2 X-ray 3.30 6 1-54 [» ]
3UZ8 X-ray 3.00 6 1-54 [» ]
3UZ9 X-ray 3.00 6 1-54 [» ]
3UZF X-ray 3.30 6 1-54 [» ]
3UZH X-ray 3.30 6 1-54 [» ]
3UZK X-ray 3.30 6 1-54 [» ]
3UZN X-ray 3.30 6 1-54 [» ]
3V23 X-ray 3.00 6 1-54 [» ]
3V25 X-ray 3.00 6 1-54 [» ]
3V27 X-ray 3.10 6 1-54 [» ]
3V29 X-ray 3.10 6 1-54 [» ]
3V2D X-ray 2.70 6 1-54 [» ]
3V2F X-ray 2.70 6 1-54 [» ]
3V6W X-ray 3.90 6 1-54 [» ]
3V6X X-ray 3.90 6 1-54 [» ]
3ZN9 X-ray 3.10 6 1-54 [» ]
3ZNE X-ray 3.10 6 1-54 [» ]
3ZVP X-ray 3.80 6 1-54 [» ]
4ABS X-ray 3.10 6 1-54 [» ]
4B8G X-ray 3.70 6 1-54 [» ]
4B8I X-ray 3.70 6 1-54 [» ]
4BTD X-ray 2.95 6 2-54 [» ]
4BYC X-ray 3.35 6 1-54 [» ]
4BYE X-ray 3.35 6 1-54 [» ]
4DHA X-ray 3.20 6 1-54 [» ]
4DHC X-ray 3.20 6 1-54 [» ]
4EJB X-ray 3.52 6 1-54 [» ]
4EJC X-ray 3.52 6 1-54 [» ]
4G5L X-ray 3.30 6 1-54 [» ]
4G5N X-ray 3.30 6 1-54 [» ]
4G5U X-ray 3.10 6 1-54 [» ]
4G5W X-ray 3.10 6 1-54 [» ]
4JUX X-ray 2.86 6 1-54 [» ]
4K0M X-ray 3.30 6 9-52 [» ]
4K0Q X-ray 3.30 6 9-52 [» ]
4KX0 X-ray 3.44 6 1-54 [» ]
4KX2 X-ray 3.44 6 1-54 [» ]
4NVV X-ray 3.00 6 1-54 [» ]
4NVX X-ray 3.00 6 1-54 [» ]
4NVZ X-ray 3.10 6 1-54 [» ]
4NW1 X-ray 3.10 6 1-54 [» ]
4QCN X-ray 2.60 6 1-54 [» ]
4QCP X-ray 2.60 6 1-54 [» ]
4QCR X-ray 2.55 6 1-54 [» ]
4QCT X-ray 2.55 6 1-54 [» ]
4QCV X-ray 2.90 6 1-54 [» ]
4QCX X-ray 2.90 6 1-54 [» ]
4QCZ X-ray 2.80 6 1-54 [» ]
4QD1 X-ray 2.80 6 1-54 [» ]
4QJS X-ray 2.90 6 1-54 [» ]
4W2B X-ray 3.60 b 1-54 [» ]
4W2D X-ray 3.60 b 1-54 [» ]
ProteinModelPortali P35871.
SMRi P35871. Positions 6-54.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 300852.TTHA0250.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD70073 ; BAD70073 ; BAD70073 .
GeneIDi 3167958.
KEGGi ttj:TTHA0250.
PATRICi 23955447. VBITheThe93045_0250.

Phylogenomic databases

eggNOGi COG0267.
HOGENOMi HOG000004838.
KOi K02913.
OMAi LELAKFC.
OrthoDBi EOG60KNBM.
PhylomeDBi P35871.

Enzyme and pathway databases

BioCyci TTHE300852:GH8R-260-MONOMER.

Miscellaneous databases

EvolutionaryTracei P35871.

Family and domain databases

HAMAPi MF_00294. Ribosomal_L33.
InterProi IPR001705. Ribosomal_L33.
IPR018264. Ribosomal_L33_CS.
IPR011332. Ribosomal_zn-bd.
[Graphical view ]
Pfami PF00471. Ribosomal_L33. 1 hit.
[Graphical view ]
SUPFAMi SSF57829. SSF57829. 1 hit.
TIGRFAMsi TIGR01023. rpmG_bact. 1 hit.
PROSITEi PS00582. RIBOSOMAL_L33. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Molecular cloning, nucleotide sequence and expression of the tufB gene encoding elongation factor Tu from Thermus thermophilus HB8."
    Satoh M., Tanaka T., Kushiro A., Hakoshima T., Tomita K.
    FEBS Lett. 288:98-100(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Identification of the gene encoding transcription factor NusG of Thermus thermophilus."
    Heinrich T., Schroeder W., Erdmann V.A., Hartmann R.K.
    J. Bacteriol. 174:7859-7863(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  3. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  4. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
    Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
    Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 2-23.
  5. "Identification of genes encoding ribosomal protein L33 from Bacillus licheniformis, Thermus thermophilus and Thermotoga maritima."
    Sharp P.M.
    Gene 139:135-136(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION.
  6. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.
  7. Cited for: STRUCTURE OF THE RIBOSOME.

Entry informationi

Entry nameiRL33_THET8
AccessioniPrimary (citable) accession number: P35871
Secondary accession number(s): Q5SLP3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 1, 1994
Last sequence update: January 23, 2007
Last modified: November 26, 2014
This is version 110 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3