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P35871

- RL33_THET8

UniProt

P35871 - RL33_THET8

Protein

50S ribosomal protein L33

Gene

rpmG

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at protein leveli
  1. Functioni

    Found on the solvent side of the large subunit.
    Contacts the E site tRNA.

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-KW
    2. structural constituent of ribosome Source: InterPro
    3. tRNA binding Source: UniProtKB-KW

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding, tRNA-binding

    Enzyme and pathway databases

    BioCyciTTHE300852:GH8R-260-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L33
    Gene namesi
    Name:rpmG
    Synonyms:rpl33
    Ordered Locus Names:TTHA0250
    OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
    Taxonomic identifieri300852 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000532: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11Removed1 Publication
    Chaini2 – 545350S ribosomal protein L33PRO_0000170257Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.

    Protein-protein interaction databases

    STRINGi300852.TTHA0250.

    Structurei

    Secondary structure

    1
    54
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi4 – 1310
    Turni14 – 163
    Beta strandi19 – 268
    Turni27 – 293
    Beta strandi35 – 406
    Turni41 – 444
    Beta strandi45 – 528

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1YL3X-ray5.50625-39[»]
    2HGJX-ray5.0051-54[»]
    2HGQX-ray5.5051-54[»]
    2HGUX-ray4.5151-54[»]
    2J01X-ray2.8062-54[»]
    2J03X-ray2.8062-54[»]
    2V47X-ray3.5062-54[»]
    2V49X-ray3.5062-54[»]
    2WDIX-ray3.3061-54[»]
    2WDJX-ray3.3061-54[»]
    2WDLX-ray3.5061-54[»]
    2WDNX-ray3.5061-54[»]
    2WH2X-ray3.4561-54[»]
    2WH4X-ray3.4561-54[»]
    2WRJX-ray3.6061-54[»]
    2WRLX-ray3.6061-54[»]
    2WROX-ray3.6061-54[»]
    2WRRX-ray3.6061-54[»]
    2X9SX-ray3.1061-54[»]
    2X9UX-ray3.1061-54[»]
    2XG0X-ray3.2061-54[»]
    2XG2X-ray3.2061-54[»]
    2XQEX-ray3.1061-54[»]
    2XTGelectron microscopy7.8061-54[»]
    2XUXelectron microscopy7.6061-54[»]
    2Y0VX-ray3.1061-54[»]
    2Y0XX-ray3.1061-54[»]
    2Y0ZX-ray3.1061-54[»]
    2Y11X-ray3.1061-54[»]
    2Y13X-ray3.1061-54[»]
    2Y15X-ray3.1061-54[»]
    2Y17X-ray3.1061-54[»]
    2Y19X-ray3.1061-54[»]
    3FINelectron microscopy6.4069-53[»]
    3HUXX-ray3.1061-54[»]
    3HUZX-ray3.1061-54[»]
    3I8FX-ray3.1061-54[»]
    3I8IX-ray3.1061-54[»]
    3I9CX-ray3.5061-54[»]
    3I9EX-ray3.5061-54[»]
    3KIRX-ray3.3061-54[»]
    3KITX-ray3.3061-54[»]
    3KIWX-ray3.6061-54[»]
    3KIYX-ray3.6061-54[»]
    3KNIX-ray3.0061-54[»]
    3KNKX-ray3.0061-54[»]
    3KNMX-ray3.4561-54[»]
    3KNOX-ray3.4561-54[»]
    3OH5X-ray3.0061-54[»]
    3OH7X-ray3.0061-54[»]
    3OHJX-ray3.0061-54[»]
    3OHKX-ray3.0061-54[»]
    3OHZX-ray3.0061-54[»]
    3OI1X-ray3.0061-54[»]
    3OI3X-ray3.1061-54[»]
    3OI5X-ray3.1061-54[»]
    3TVEX-ray3.1069-53[»]
    3TVHX-ray3.1069-53[»]
    3UXQX-ray3.2061-54[»]
    3UXRX-ray3.2061-54[»]
    3UYEX-ray3.0061-54[»]
    3UYGX-ray3.0061-54[»]
    3UZ1X-ray3.3061-54[»]
    3UZ2X-ray3.3061-54[»]
    3UZ8X-ray3.0061-54[»]
    3UZ9X-ray3.0061-54[»]
    3UZFX-ray3.3061-54[»]
    3UZHX-ray3.3061-54[»]
    3UZKX-ray3.3061-54[»]
    3UZNX-ray3.3061-54[»]
    3V23X-ray3.0061-54[»]
    3V25X-ray3.0061-54[»]
    3V27X-ray3.1061-54[»]
    3V29X-ray3.1061-54[»]
    3V2DX-ray2.7061-54[»]
    3V2FX-ray2.7061-54[»]
    3V6WX-ray3.9061-54[»]
    3V6XX-ray3.9061-54[»]
    3ZN9X-ray3.1061-54[»]
    3ZNEX-ray3.1061-54[»]
    3ZVPX-ray3.8061-54[»]
    4ABSX-ray3.1061-54[»]
    4B8GX-ray3.7061-54[»]
    4B8IX-ray3.7061-54[»]
    4BTDX-ray2.9562-54[»]
    4BYCX-ray3.3561-54[»]
    4BYEX-ray3.3561-54[»]
    4DHAX-ray3.2061-54[»]
    4DHCX-ray3.2061-54[»]
    4EJBX-ray3.5261-54[»]
    4EJCX-ray3.5261-54[»]
    4G5LX-ray3.3061-54[»]
    4G5NX-ray3.3061-54[»]
    4G5UX-ray3.1061-54[»]
    4G5WX-ray3.1061-54[»]
    4JUXX-ray2.8661-54[»]
    4K0MX-ray3.3069-52[»]
    4K0QX-ray3.3069-52[»]
    4NVVX-ray3.0061-54[»]
    4NVXX-ray3.0061-54[»]
    4NVZX-ray3.1061-54[»]
    4NW1X-ray3.1061-54[»]
    ProteinModelPortaliP35871.
    SMRiP35871. Positions 6-54.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP35871.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L33P family.Curated

    Phylogenomic databases

    eggNOGiCOG0267.
    HOGENOMiHOG000004838.
    KOiK02913.
    OMAiLELAKFC.
    OrthoDBiEOG60KNBM.
    PhylomeDBiP35871.

    Family and domain databases

    HAMAPiMF_00294. Ribosomal_L33.
    InterProiIPR001705. Ribosomal_L33.
    IPR018264. Ribosomal_L33_CS.
    IPR011332. Ribosomal_zn-bd.
    [Graphical view]
    PfamiPF00471. Ribosomal_L33. 1 hit.
    [Graphical view]
    SUPFAMiSSF57829. SSF57829. 1 hit.
    TIGRFAMsiTIGR01023. rpmG_bact. 1 hit.
    PROSITEiPS00582. RIBOSOMAL_L33. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P35871-1 [UniParc]FASTAAdd to Basket

    « Hide

    MASEVRIKLL LECTECKRRN YATEKNKRNT PNKLELRKYC PWCRKHTVHR   50
    EVKI 54
    Length:54
    Mass (Da):6,616
    Last modified:January 23, 2007 - v3
    Checksum:i13DC56C3247C60CD
    GO

    Sequence cautioni

    The sequence L10348 differs from that shown. Reason: Frameshift at position 45.

    Mass spectrometryi

    Molecular mass is 6486 Da from positions 2 - 54. Determined by MALDI. 1 Publication

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X61957 Genomic DNA. No translation available.
    L10348 Genomic DNA. No translation available.
    AP008226 Genomic DNA. Translation: BAD70073.1.
    RefSeqiYP_143516.1. NC_006461.1.

    Genome annotation databases

    EnsemblBacteriaiBAD70073; BAD70073; BAD70073.
    GeneIDi3167958.
    KEGGittj:TTHA0250.
    PATRICi23955447. VBITheThe93045_0250.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X61957 Genomic DNA. No translation available.
    L10348 Genomic DNA. No translation available.
    AP008226 Genomic DNA. Translation: BAD70073.1 .
    RefSeqi YP_143516.1. NC_006461.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1YL3 X-ray 5.50 6 25-39 [» ]
    2HGJ X-ray 5.00 5 1-54 [» ]
    2HGQ X-ray 5.50 5 1-54 [» ]
    2HGU X-ray 4.51 5 1-54 [» ]
    2J01 X-ray 2.80 6 2-54 [» ]
    2J03 X-ray 2.80 6 2-54 [» ]
    2V47 X-ray 3.50 6 2-54 [» ]
    2V49 X-ray 3.50 6 2-54 [» ]
    2WDI X-ray 3.30 6 1-54 [» ]
    2WDJ X-ray 3.30 6 1-54 [» ]
    2WDL X-ray 3.50 6 1-54 [» ]
    2WDN X-ray 3.50 6 1-54 [» ]
    2WH2 X-ray 3.45 6 1-54 [» ]
    2WH4 X-ray 3.45 6 1-54 [» ]
    2WRJ X-ray 3.60 6 1-54 [» ]
    2WRL X-ray 3.60 6 1-54 [» ]
    2WRO X-ray 3.60 6 1-54 [» ]
    2WRR X-ray 3.60 6 1-54 [» ]
    2X9S X-ray 3.10 6 1-54 [» ]
    2X9U X-ray 3.10 6 1-54 [» ]
    2XG0 X-ray 3.20 6 1-54 [» ]
    2XG2 X-ray 3.20 6 1-54 [» ]
    2XQE X-ray 3.10 6 1-54 [» ]
    2XTG electron microscopy 7.80 6 1-54 [» ]
    2XUX electron microscopy 7.60 6 1-54 [» ]
    2Y0V X-ray 3.10 6 1-54 [» ]
    2Y0X X-ray 3.10 6 1-54 [» ]
    2Y0Z X-ray 3.10 6 1-54 [» ]
    2Y11 X-ray 3.10 6 1-54 [» ]
    2Y13 X-ray 3.10 6 1-54 [» ]
    2Y15 X-ray 3.10 6 1-54 [» ]
    2Y17 X-ray 3.10 6 1-54 [» ]
    2Y19 X-ray 3.10 6 1-54 [» ]
    3FIN electron microscopy 6.40 6 9-53 [» ]
    3HUX X-ray 3.10 6 1-54 [» ]
    3HUZ X-ray 3.10 6 1-54 [» ]
    3I8F X-ray 3.10 6 1-54 [» ]
    3I8I X-ray 3.10 6 1-54 [» ]
    3I9C X-ray 3.50 6 1-54 [» ]
    3I9E X-ray 3.50 6 1-54 [» ]
    3KIR X-ray 3.30 6 1-54 [» ]
    3KIT X-ray 3.30 6 1-54 [» ]
    3KIW X-ray 3.60 6 1-54 [» ]
    3KIY X-ray 3.60 6 1-54 [» ]
    3KNI X-ray 3.00 6 1-54 [» ]
    3KNK X-ray 3.00 6 1-54 [» ]
    3KNM X-ray 3.45 6 1-54 [» ]
    3KNO X-ray 3.45 6 1-54 [» ]
    3OH5 X-ray 3.00 6 1-54 [» ]
    3OH7 X-ray 3.00 6 1-54 [» ]
    3OHJ X-ray 3.00 6 1-54 [» ]
    3OHK X-ray 3.00 6 1-54 [» ]
    3OHZ X-ray 3.00 6 1-54 [» ]
    3OI1 X-ray 3.00 6 1-54 [» ]
    3OI3 X-ray 3.10 6 1-54 [» ]
    3OI5 X-ray 3.10 6 1-54 [» ]
    3TVE X-ray 3.10 6 9-53 [» ]
    3TVH X-ray 3.10 6 9-53 [» ]
    3UXQ X-ray 3.20 6 1-54 [» ]
    3UXR X-ray 3.20 6 1-54 [» ]
    3UYE X-ray 3.00 6 1-54 [» ]
    3UYG X-ray 3.00 6 1-54 [» ]
    3UZ1 X-ray 3.30 6 1-54 [» ]
    3UZ2 X-ray 3.30 6 1-54 [» ]
    3UZ8 X-ray 3.00 6 1-54 [» ]
    3UZ9 X-ray 3.00 6 1-54 [» ]
    3UZF X-ray 3.30 6 1-54 [» ]
    3UZH X-ray 3.30 6 1-54 [» ]
    3UZK X-ray 3.30 6 1-54 [» ]
    3UZN X-ray 3.30 6 1-54 [» ]
    3V23 X-ray 3.00 6 1-54 [» ]
    3V25 X-ray 3.00 6 1-54 [» ]
    3V27 X-ray 3.10 6 1-54 [» ]
    3V29 X-ray 3.10 6 1-54 [» ]
    3V2D X-ray 2.70 6 1-54 [» ]
    3V2F X-ray 2.70 6 1-54 [» ]
    3V6W X-ray 3.90 6 1-54 [» ]
    3V6X X-ray 3.90 6 1-54 [» ]
    3ZN9 X-ray 3.10 6 1-54 [» ]
    3ZNE X-ray 3.10 6 1-54 [» ]
    3ZVP X-ray 3.80 6 1-54 [» ]
    4ABS X-ray 3.10 6 1-54 [» ]
    4B8G X-ray 3.70 6 1-54 [» ]
    4B8I X-ray 3.70 6 1-54 [» ]
    4BTD X-ray 2.95 6 2-54 [» ]
    4BYC X-ray 3.35 6 1-54 [» ]
    4BYE X-ray 3.35 6 1-54 [» ]
    4DHA X-ray 3.20 6 1-54 [» ]
    4DHC X-ray 3.20 6 1-54 [» ]
    4EJB X-ray 3.52 6 1-54 [» ]
    4EJC X-ray 3.52 6 1-54 [» ]
    4G5L X-ray 3.30 6 1-54 [» ]
    4G5N X-ray 3.30 6 1-54 [» ]
    4G5U X-ray 3.10 6 1-54 [» ]
    4G5W X-ray 3.10 6 1-54 [» ]
    4JUX X-ray 2.86 6 1-54 [» ]
    4K0M X-ray 3.30 6 9-52 [» ]
    4K0Q X-ray 3.30 6 9-52 [» ]
    4NVV X-ray 3.00 6 1-54 [» ]
    4NVX X-ray 3.00 6 1-54 [» ]
    4NVZ X-ray 3.10 6 1-54 [» ]
    4NW1 X-ray 3.10 6 1-54 [» ]
    ProteinModelPortali P35871.
    SMRi P35871. Positions 6-54.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 300852.TTHA0250.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAD70073 ; BAD70073 ; BAD70073 .
    GeneIDi 3167958.
    KEGGi ttj:TTHA0250.
    PATRICi 23955447. VBITheThe93045_0250.

    Phylogenomic databases

    eggNOGi COG0267.
    HOGENOMi HOG000004838.
    KOi K02913.
    OMAi LELAKFC.
    OrthoDBi EOG60KNBM.
    PhylomeDBi P35871.

    Enzyme and pathway databases

    BioCyci TTHE300852:GH8R-260-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P35871.

    Family and domain databases

    HAMAPi MF_00294. Ribosomal_L33.
    InterProi IPR001705. Ribosomal_L33.
    IPR018264. Ribosomal_L33_CS.
    IPR011332. Ribosomal_zn-bd.
    [Graphical view ]
    Pfami PF00471. Ribosomal_L33. 1 hit.
    [Graphical view ]
    SUPFAMi SSF57829. SSF57829. 1 hit.
    TIGRFAMsi TIGR01023. rpmG_bact. 1 hit.
    PROSITEi PS00582. RIBOSOMAL_L33. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Molecular cloning, nucleotide sequence and expression of the tufB gene encoding elongation factor Tu from Thermus thermophilus HB8."
      Satoh M., Tanaka T., Kushiro A., Hakoshima T., Tomita K.
      FEBS Lett. 288:98-100(1991) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    2. "Identification of the gene encoding transcription factor NusG of Thermus thermophilus."
      Heinrich T., Schroeder W., Erdmann V.A., Hartmann R.K.
      J. Bacteriol. 174:7859-7863(1992) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: HB8 / ATCC 27634 / DSM 579.
    3. "Complete genome sequence of Thermus thermophilus HB8."
      Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
      Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB8 / ATCC 27634 / DSM 579.
    4. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
      Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
      Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 2-23.
    5. "Identification of genes encoding ribosomal protein L33 from Bacillus licheniformis, Thermus thermophilus and Thermotoga maritima."
      Sharp P.M.
      Gene 139:135-136(1994) [PubMed] [Europe PMC] [Abstract]
      Cited for: IDENTIFICATION.
    6. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
      Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
      Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: MASS SPECTROMETRY.
    7. Cited for: STRUCTURE OF THE RIBOSOME.

    Entry informationi

    Entry nameiRL33_THET8
    AccessioniPrimary (citable) accession number: P35871
    Secondary accession number(s): Q5SLP3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: June 1, 1994
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 108 of the entry and version 3 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3