Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

P35811 (XYNC_FIBSS) Reviewed, UniProtKB/Swiss-Prot

Last modified November 13, 2013. Version 78. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Endo-1,4-beta-xylanase C

Short name=Xylanase C
EC=3.2.1.8
Alternative name(s):
1,4-beta-D-xylan xylanohydrolase C
Gene names
Name:xynC
Ordered Locus Names:Fisuc_0362, FSU_0777
OrganismFibrobacter succinogenes (strain ATCC 19169 / S85) [Complete proteome] [HAMAP]
Taxonomic identifier59374 [NCBI]
Taxonomic lineageBacteriaFibrobacteresFibrobacteralesFibrobacteraceaeFibrobacter

Protein attributes

Sequence length608 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Cleaves xylans with the production of xylose, xylobiose and xylo-oligosaccharides.

Catalytic activity

Endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans.

Pathway

Glycan degradation; xylan degradation.

Sequence similarities

Belongs to the glycosyl hydrolase 11 (cellulase G) family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2525 Ref.1
Chain26 – 608583Endo-1,4-beta-xylanase C
PRO_0000008006

Regions

Region26 – 262237Xylanase domain 1
Region286 – 529244Xylanase domain 2
Compositional bias263 – 28523Ser-rich (linker)
Compositional bias530 – 54314Ser-rich (linker)

Sites

Active site1421Nucleophile By similarity
Active site2371Proton donor By similarity
Active site4091Nucleophile By similarity
Active site5011Proton donor By similarity

Experimental info

Sequence conflict1751T → I in AAA21848. Ref.1

Sequences

Sequence LengthMass (Da)Tools
P35811 [UniParc].

Last modified January 19, 2010. Version 2.
Checksum: BA5653D842798DC4

FASTA60866,403
        10         20         30         40         50         60 
MKTFSVTKSS VVFAMALGMA STAFAQDFCS NAQHSGQKVT ITSNQTGKIG DIGYELWDEN 

        70         80         90        100        110        120 
GHGGSATFYS DGSMDCNITG AKDYLCRAGL SLGSNKTYKE LGGDMIAEFK LVKSGAQNVG 

       130        140        150        160        170        180 
YSYIGIYGWM EGVSGTPSQL VEYYVIDNTL ANDMPGSWIG NERKGTITVD GGTYTVYRNT 

       190        200        210        220        230        240 
RTGPAIKNSG NVTFYQYFSV RTSPRDCGTI NISEHMRQWE KMGLTMGKLY EAKVLGEAGN 

       250        260        270        280        290        300 
VNGEVRGGHM DFPHAKVYVK NGSDPVSSSS VKSSSSTDAP KSSSSKGNGN VSGKIDACKD 

       310        320        330        340        350        360 
VMGHEGKETR TQGQNNSSVT GNVGSSPYHY EIWYQGGNNS MTFYDNGTYK ASWNGTNDFL 

       370        380        390        400        410        420 
ARVGFKYDEK HTYEELGPID AYYKWSKQGS AGGYNYIGIY GWTVDPLVEY YIVDDWFNKP 

       430        440        450        460        470        480 
GANLLGQRKG EFTVDGDTYE IWQNTRVQQP SIKGTQTFPQ YFSVRKSARS CGHIDITAHM 

       490        500        510        520        530        540 
KKWEELGMKM GKMYEAKVLV EAGGGSGSFD VTYFKMTDKA HPLAQPEPES SSSEAKVESS 

       550        560        570        580        590        600 
SSTVALHAAP KMELKSGNFQ VFDMQGRFLG TVKLDAGASV AQVLKANFKN AGIYMVKQGN 


FMQRVAVK 

« Hide

References

« Hide 'large scale' references
[1]"The xynC gene from Fibrobacter succinogenes S85 codes for a xylanase with two similar catalytic domains."
Paradis F.W., Zhu H., Krell P.J., Phillips J.P., Forsberg C.W.
J. Bacteriol. 175:7666-7672(1993) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF 26-41.
[2]"Complete sequence of Fibrobacter succinogenes subsp. succinogenes S85."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Weimer P.J. expand/collapse author list , Stevenson D.M., Boyum J., Brumm P.I., Mead D.
Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 19169 / S85.
[3]"Complete sequence of Fibrobacter succinogenes subsp. succinogenes S85."
Durkin A.S., Nelson K.E., Morrison M., Forsberg C.W., Wilson D.B., Russell J.B., Cann I.K.O., Mackie R.I., White B.A.
Submitted (AUG-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 19169 / S85.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U01037 Genomic DNA. Translation: AAA21848.1.
CP001792 Genomic DNA. Translation: ACX73974.1.
CP002158 Genomic DNA. Translation: ADL26842.1.
PIRB53295.
RefSeqYP_003248456.1. NC_013410.1.
YP_005820872.1. NC_017448.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING59374.Fisuc_0362.

Protein family/group databases

CAZyGH11. Glycoside Hydrolase Family 11.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACX73974; ACX73974; Fisuc_0362.
ADL26842; ADL26842; FSU_0777.
GeneID12432396.
8520948.
KEGGfsc:FSU_0777.
fsu:Fisuc_0362.
PATRIC32140497. VBIFibSuc28982_0353.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGNOG05353.
OrthoDBEOG63VBWG.

Enzyme and pathway databases

UniPathwayUPA00114.

Family and domain databases

Gene3D2.60.120.180. 2 hits.
InterProIPR008985. ConA-like_lec_gl_sf.
IPR001137. Glyco_hydro_11.
IPR013319. Glyco_hydro_11/12.
IPR018208. Glyco_hydro_11_AS.
[Graphical view]
PfamPF00457. Glyco_hydro_11. 2 hits.
[Graphical view]
PRINTSPR00911. GLHYDRLASE11.
SUPFAMSSF49899. SSF49899. 2 hits.
PROSITEPS00776. GLYCOSYL_HYDROL_F11_1. 1 hit.
PS00777. GLYCOSYL_HYDROL_F11_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameXYNC_FIBSS
AccessionPrimary (citable) accession number: P35811
Secondary accession number(s): C9RKP6, D9S812
Entry history
Integrated into UniProtKB/Swiss-Prot: June 1, 1994
Last sequence update: January 19, 2010
Last modified: November 13, 2013
This is version 78 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PATHWAY comments

Index of metabolic and biosynthesis pathways

Glycosyl hydrolases

Classification of glycosyl hydrolase families and list of entries