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P35811

- XYNC_FIBSS

UniProt

P35811 - XYNC_FIBSS

Protein

Endo-1,4-beta-xylanase C

Gene

xynC

Organism
Fibrobacter succinogenes (strain ATCC 19169 / S85)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 79 (01 Oct 2014)
      Sequence version 2 (19 Jan 2010)
      Previous versions | rss
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    Functioni

    Cleaves xylans with the production of xylose, xylobiose and xylo-oligosaccharides.

    Catalytic activityi

    Endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans.

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei142 – 1421NucleophilePROSITE-ProRule annotation
    Active sitei237 – 2371Proton donorPROSITE-ProRule annotation
    Active sitei409 – 4091NucleophilePROSITE-ProRule annotation
    Active sitei501 – 5011Proton donorPROSITE-ProRule annotation

    GO - Molecular functioni

    1. endo-1,4-beta-xylanase activity Source: UniProtKB-EC

    GO - Biological processi

    1. cellulose catabolic process Source: UniProtKB-KW
    2. xylan catabolic process Source: UniProtKB-UniPathway

    Keywords - Molecular functioni

    Glycosidase, Hydrolase

    Keywords - Biological processi

    Carbohydrate metabolism, Cellulose degradation, Polysaccharide degradation, Xylan degradation

    Enzyme and pathway databases

    UniPathwayiUPA00114.

    Protein family/group databases

    CAZyiGH11. Glycoside Hydrolase Family 11.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Endo-1,4-beta-xylanase C (EC:3.2.1.8)
    Short name:
    Xylanase C
    Alternative name(s):
    1,4-beta-D-xylan xylanohydrolase C
    Gene namesi
    Name:xynC
    Ordered Locus Names:Fisuc_0362, FSU_0777
    OrganismiFibrobacter succinogenes (strain ATCC 19169 / S85)
    Taxonomic identifieri59374 [NCBI]
    Taxonomic lineageiBacteriaFibrobacteresFibrobacteralesFibrobacteraceaeFibrobacter
    ProteomesiUP000000517: Chromosome, UP000001497: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 25251 PublicationAdd
    BLAST
    Chaini26 – 608583Endo-1,4-beta-xylanase CPRO_0000008006Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi59374.Fisuc_0362.

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni26 – 262237Xylanase domain 1Add
    BLAST
    Regioni286 – 529244Xylanase domain 2Add
    BLAST

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi263 – 28523Ser-rich (linker)Add
    BLAST
    Compositional biasi530 – 54314Ser-rich (linker)Add
    BLAST

    Sequence similaritiesi

    Keywords - Domaini

    Repeat, Signal

    Phylogenomic databases

    eggNOGiNOG05353.
    OrthoDBiEOG63VBWG.

    Family and domain databases

    Gene3Di2.60.120.180. 2 hits.
    InterProiIPR008985. ConA-like_lec_gl_sf.
    IPR001137. Glyco_hydro_11.
    IPR013319. Glyco_hydro_11/12.
    IPR018208. Glyco_hydro_11_AS.
    [Graphical view]
    PfamiPF00457. Glyco_hydro_11. 2 hits.
    [Graphical view]
    PRINTSiPR00911. GLHYDRLASE11.
    SUPFAMiSSF49899. SSF49899. 2 hits.
    PROSITEiPS00776. GLYCOSYL_HYDROL_F11_1. 1 hit.
    PS00777. GLYCOSYL_HYDROL_F11_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P35811-1 [UniParc]FASTAAdd to Basket

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    MKTFSVTKSS VVFAMALGMA STAFAQDFCS NAQHSGQKVT ITSNQTGKIG    50
    DIGYELWDEN GHGGSATFYS DGSMDCNITG AKDYLCRAGL SLGSNKTYKE 100
    LGGDMIAEFK LVKSGAQNVG YSYIGIYGWM EGVSGTPSQL VEYYVIDNTL 150
    ANDMPGSWIG NERKGTITVD GGTYTVYRNT RTGPAIKNSG NVTFYQYFSV 200
    RTSPRDCGTI NISEHMRQWE KMGLTMGKLY EAKVLGEAGN VNGEVRGGHM 250
    DFPHAKVYVK NGSDPVSSSS VKSSSSTDAP KSSSSKGNGN VSGKIDACKD 300
    VMGHEGKETR TQGQNNSSVT GNVGSSPYHY EIWYQGGNNS MTFYDNGTYK 350
    ASWNGTNDFL ARVGFKYDEK HTYEELGPID AYYKWSKQGS AGGYNYIGIY 400
    GWTVDPLVEY YIVDDWFNKP GANLLGQRKG EFTVDGDTYE IWQNTRVQQP 450
    SIKGTQTFPQ YFSVRKSARS CGHIDITAHM KKWEELGMKM GKMYEAKVLV 500
    EAGGGSGSFD VTYFKMTDKA HPLAQPEPES SSSEAKVESS SSTVALHAAP 550
    KMELKSGNFQ VFDMQGRFLG TVKLDAGASV AQVLKANFKN AGIYMVKQGN 600
    FMQRVAVK 608
    Length:608
    Mass (Da):66,403
    Last modified:January 19, 2010 - v2
    Checksum:iBA5653D842798DC4
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti175 – 1751T → I in AAA21848. (PubMed:8244936)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U01037 Genomic DNA. Translation: AAA21848.1.
    CP001792 Genomic DNA. Translation: ACX73974.1.
    CP002158 Genomic DNA. Translation: ADL26842.1.
    PIRiB53295.
    RefSeqiYP_003248456.1. NC_013410.1.
    YP_005820872.1. NC_017448.1.

    Genome annotation databases

    EnsemblBacteriaiACX73974; ACX73974; Fisuc_0362.
    ADL26842; ADL26842; FSU_0777.
    GeneIDi12432396.
    8520948.
    KEGGifsc:FSU_0777.
    fsu:Fisuc_0362.
    PATRICi32140497. VBIFibSuc28982_0353.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U01037 Genomic DNA. Translation: AAA21848.1 .
    CP001792 Genomic DNA. Translation: ACX73974.1 .
    CP002158 Genomic DNA. Translation: ADL26842.1 .
    PIRi B53295.
    RefSeqi YP_003248456.1. NC_013410.1.
    YP_005820872.1. NC_017448.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 59374.Fisuc_0362.

    Protein family/group databases

    CAZyi GH11. Glycoside Hydrolase Family 11.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACX73974 ; ACX73974 ; Fisuc_0362 .
    ADL26842 ; ADL26842 ; FSU_0777 .
    GeneIDi 12432396.
    8520948.
    KEGGi fsc:FSU_0777.
    fsu:Fisuc_0362.
    PATRICi 32140497. VBIFibSuc28982_0353.

    Phylogenomic databases

    eggNOGi NOG05353.
    OrthoDBi EOG63VBWG.

    Enzyme and pathway databases

    UniPathwayi UPA00114 .

    Family and domain databases

    Gene3Di 2.60.120.180. 2 hits.
    InterProi IPR008985. ConA-like_lec_gl_sf.
    IPR001137. Glyco_hydro_11.
    IPR013319. Glyco_hydro_11/12.
    IPR018208. Glyco_hydro_11_AS.
    [Graphical view ]
    Pfami PF00457. Glyco_hydro_11. 2 hits.
    [Graphical view ]
    PRINTSi PR00911. GLHYDRLASE11.
    SUPFAMi SSF49899. SSF49899. 2 hits.
    PROSITEi PS00776. GLYCOSYL_HYDROL_F11_1. 1 hit.
    PS00777. GLYCOSYL_HYDROL_F11_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The xynC gene from Fibrobacter succinogenes S85 codes for a xylanase with two similar catalytic domains."
      Paradis F.W., Zhu H., Krell P.J., Phillips J.P., Forsberg C.W.
      J. Bacteriol. 175:7666-7672(1993) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF 26-41.
    2. "Complete sequence of Fibrobacter succinogenes subsp. succinogenes S85."
      US DOE Joint Genome Institute
      Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Weimer P.J.
      , Stevenson D.M., Boyum J., Brumm P.I., Mead D.
      Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 19169 / S85.
    3. "Complete sequence of Fibrobacter succinogenes subsp. succinogenes S85."
      Durkin A.S., Nelson K.E., Morrison M., Forsberg C.W., Wilson D.B., Russell J.B., Cann I.K.O., Mackie R.I., White B.A.
      Submitted (AUG-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 19169 / S85.

    Entry informationi

    Entry nameiXYNC_FIBSS
    AccessioniPrimary (citable) accession number: P35811
    Secondary accession number(s): C9RKP6, D9S812
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: June 1, 1994
    Last sequence update: January 19, 2010
    Last modified: October 1, 2014
    This is version 79 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    2. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3