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P35811

- XYNC_FIBSS

UniProt

P35811 - XYNC_FIBSS

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Protein

Endo-1,4-beta-xylanase C

Gene
xynC, Fisuc_0362, FSU_0777
Organism
Fibrobacter succinogenes (strain ATCC 19169 / S85)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at protein leveli

Functioni

Cleaves xylans with the production of xylose, xylobiose and xylo-oligosaccharides.

Catalytic activityi

Endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans.

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei142 – 1421Nucleophile By similarity
Active sitei237 – 2371Proton donor By similarity
Active sitei409 – 4091Nucleophile By similarity
Active sitei501 – 5011Proton donor By similarity

GO - Molecular functioni

  1. endo-1,4-beta-xylanase activity Source: UniProtKB-EC

GO - Biological processi

  1. cellulose catabolic process Source: UniProtKB-KW
  2. xylan catabolic process Source: UniProtKB-UniPathway
Complete GO annotation...

Keywords - Molecular functioni

Glycosidase, Hydrolase

Keywords - Biological processi

Carbohydrate metabolism, Cellulose degradation, Polysaccharide degradation, Xylan degradation

Enzyme and pathway databases

UniPathwayiUPA00114.

Protein family/group databases

CAZyiGH11. Glycoside Hydrolase Family 11.

Names & Taxonomyi

Protein namesi
Recommended name:
Endo-1,4-beta-xylanase C (EC:3.2.1.8)
Short name:
Xylanase C
Alternative name(s):
1,4-beta-D-xylan xylanohydrolase C
Gene namesi
Name:xynC
Ordered Locus Names:Fisuc_0362, FSU_0777
OrganismiFibrobacter succinogenes (strain ATCC 19169 / S85)
Taxonomic identifieri59374 [NCBI]
Taxonomic lineageiBacteriaFibrobacteresFibrobacteralesFibrobacteraceaeFibrobacter
ProteomesiUP000000517: Chromosome, UP000001497: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 25251 PublicationAdd
BLAST
Chaini26 – 608583Endo-1,4-beta-xylanase CPRO_0000008006Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi59374.Fisuc_0362.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni26 – 262237Xylanase domain 1Add
BLAST
Regioni286 – 529244Xylanase domain 2Add
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi263 – 28523Ser-rich (linker)Add
BLAST
Compositional biasi530 – 54314Ser-rich (linker)Add
BLAST

Sequence similaritiesi

Keywords - Domaini

Repeat, Signal

Phylogenomic databases

eggNOGiNOG05353.
OrthoDBiEOG63VBWG.

Family and domain databases

Gene3Di2.60.120.180. 2 hits.
InterProiIPR008985. ConA-like_lec_gl_sf.
IPR001137. Glyco_hydro_11.
IPR013319. Glyco_hydro_11/12.
IPR018208. Glyco_hydro_11_AS.
[Graphical view]
PfamiPF00457. Glyco_hydro_11. 2 hits.
[Graphical view]
PRINTSiPR00911. GLHYDRLASE11.
SUPFAMiSSF49899. SSF49899. 2 hits.
PROSITEiPS00776. GLYCOSYL_HYDROL_F11_1. 1 hit.
PS00777. GLYCOSYL_HYDROL_F11_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P35811-1 [UniParc]FASTAAdd to Basket

« Hide

MKTFSVTKSS VVFAMALGMA STAFAQDFCS NAQHSGQKVT ITSNQTGKIG    50
DIGYELWDEN GHGGSATFYS DGSMDCNITG AKDYLCRAGL SLGSNKTYKE 100
LGGDMIAEFK LVKSGAQNVG YSYIGIYGWM EGVSGTPSQL VEYYVIDNTL 150
ANDMPGSWIG NERKGTITVD GGTYTVYRNT RTGPAIKNSG NVTFYQYFSV 200
RTSPRDCGTI NISEHMRQWE KMGLTMGKLY EAKVLGEAGN VNGEVRGGHM 250
DFPHAKVYVK NGSDPVSSSS VKSSSSTDAP KSSSSKGNGN VSGKIDACKD 300
VMGHEGKETR TQGQNNSSVT GNVGSSPYHY EIWYQGGNNS MTFYDNGTYK 350
ASWNGTNDFL ARVGFKYDEK HTYEELGPID AYYKWSKQGS AGGYNYIGIY 400
GWTVDPLVEY YIVDDWFNKP GANLLGQRKG EFTVDGDTYE IWQNTRVQQP 450
SIKGTQTFPQ YFSVRKSARS CGHIDITAHM KKWEELGMKM GKMYEAKVLV 500
EAGGGSGSFD VTYFKMTDKA HPLAQPEPES SSSEAKVESS SSTVALHAAP 550
KMELKSGNFQ VFDMQGRFLG TVKLDAGASV AQVLKANFKN AGIYMVKQGN 600
FMQRVAVK 608
Length:608
Mass (Da):66,403
Last modified:January 19, 2010 - v2
Checksum:iBA5653D842798DC4
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti175 – 1751T → I in AAA21848. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U01037 Genomic DNA. Translation: AAA21848.1.
CP001792 Genomic DNA. Translation: ACX73974.1.
CP002158 Genomic DNA. Translation: ADL26842.1.
PIRiB53295.
RefSeqiYP_003248456.1. NC_013410.1.
YP_005820872.1. NC_017448.1.

Genome annotation databases

EnsemblBacteriaiACX73974; ACX73974; Fisuc_0362.
ADL26842; ADL26842; FSU_0777.
GeneIDi12432396.
8520948.
KEGGifsc:FSU_0777.
fsu:Fisuc_0362.
PATRICi32140497. VBIFibSuc28982_0353.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U01037 Genomic DNA. Translation: AAA21848.1 .
CP001792 Genomic DNA. Translation: ACX73974.1 .
CP002158 Genomic DNA. Translation: ADL26842.1 .
PIRi B53295.
RefSeqi YP_003248456.1. NC_013410.1.
YP_005820872.1. NC_017448.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 59374.Fisuc_0362.

Protein family/group databases

CAZyi GH11. Glycoside Hydrolase Family 11.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACX73974 ; ACX73974 ; Fisuc_0362 .
ADL26842 ; ADL26842 ; FSU_0777 .
GeneIDi 12432396.
8520948.
KEGGi fsc:FSU_0777.
fsu:Fisuc_0362.
PATRICi 32140497. VBIFibSuc28982_0353.

Phylogenomic databases

eggNOGi NOG05353.
OrthoDBi EOG63VBWG.

Enzyme and pathway databases

UniPathwayi UPA00114 .

Family and domain databases

Gene3Di 2.60.120.180. 2 hits.
InterProi IPR008985. ConA-like_lec_gl_sf.
IPR001137. Glyco_hydro_11.
IPR013319. Glyco_hydro_11/12.
IPR018208. Glyco_hydro_11_AS.
[Graphical view ]
Pfami PF00457. Glyco_hydro_11. 2 hits.
[Graphical view ]
PRINTSi PR00911. GLHYDRLASE11.
SUPFAMi SSF49899. SSF49899. 2 hits.
PROSITEi PS00776. GLYCOSYL_HYDROL_F11_1. 1 hit.
PS00777. GLYCOSYL_HYDROL_F11_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The xynC gene from Fibrobacter succinogenes S85 codes for a xylanase with two similar catalytic domains."
    Paradis F.W., Zhu H., Krell P.J., Phillips J.P., Forsberg C.W.
    J. Bacteriol. 175:7666-7672(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF 26-41.
  2. "Complete sequence of Fibrobacter succinogenes subsp. succinogenes S85."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Weimer P.J.
    , Stevenson D.M., Boyum J., Brumm P.I., Mead D.
    Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 19169 / S85.
  3. "Complete sequence of Fibrobacter succinogenes subsp. succinogenes S85."
    Durkin A.S., Nelson K.E., Morrison M., Forsberg C.W., Wilson D.B., Russell J.B., Cann I.K.O., Mackie R.I., White B.A.
    Submitted (AUG-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 19169 / S85.

Entry informationi

Entry nameiXYNC_FIBSS
AccessioniPrimary (citable) accession number: P35811
Secondary accession number(s): C9RKP6, D9S812
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 1, 1994
Last sequence update: January 19, 2010
Last modified: November 13, 2013
This is version 78 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3