Skip Header

 
Contribute Send feedback
Read comments (0) or add your own

Reviewed, UniProtKB/Swiss-Prot P35811 (XYNC_FIBSU)

Last modified April 14, 2009. Version 56. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Endo-1,4-beta-xylanase C
      Short name=Xylanase C
    EC=3.2.1.8
Alternative name(s):
    1,4-beta-D-xylan xylanohydrolase C
Gene names
Name: xynC
OrganismFibrobacter succinogenes (Bacteroides succinogenes)
Taxonomic identifier833 [NCBI]
Taxonomic lineageBacteriaFibrobacteresFibrobacteralesFibrobacteraceaeFibrobacter

Protein attributes

Sequence length608 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level.

General annotation (Comments)

Function

Cleaves xylans with the production of xylose, xylobiose and xylo-oligosaccharides.

Catalytic activity

Endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans.

Pathway

Glycan degradation; xylan degradation.

Sequence similarities

Belongs to the glycosyl hydrolase 11 (cellulase G) family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2525 Ref.1
Chain26 – 608583Endo-1,4-beta-xylanase C
PRO_0000008006

Regions

Region26 – 262237Xylanase domain 1
Region286 – 529244Xylanase domain 2
Compositional bias263 – 28523Ser-rich (linker)
Compositional bias530 – 54314Ser-rich (linker)

Sites

Active site1421Nucleophile By similarity
Active site2371Proton donor By similarity
Active site4091Nucleophile By similarity
Active site5011Proton donor By similarity

Sequences

Sequence LengthMass (Da)Tools
P35811-1 [UniParc].

Last modified June 1, 1994. Version 1.
Checksum: 7FA338016F5857CE

FASTA60866,415
        10         20         30         40         50         60 
MKTFSVTKSS VVFAMALGMA STAFAQDFCS NAQHSGQKVT ITSNQTGKIG DIGYELWDEN 

        70         80         90        100        110        120 
GHGGSATFYS DGSMDCNITG AKDYLCRAGL SLGSNKTYKE LGGDMIAEFK LVKSGAQNVG 

       130        140        150        160        170        180 
YSYIGIYGWM EGVSGTPSQL VEYYVIDNTL ANDMPGSWIG NERKGTITVD GGTYIVYRNT 

       190        200        210        220        230        240 
RTGPAIKNSG NVTFYQYFSV RTSPRDCGTI NISEHMRQWE KMGLTMGKLY EAKVLGEAGN 

       250        260        270        280        290        300 
VNGEVRGGHM DFPHAKVYVK NGSDPVSSSS VKSSSSTDAP KSSSSKGNGN VSGKIDACKD 

       310        320        330        340        350        360 
VMGHEGKETR TQGQNNSSVT GNVGSSPYHY EIWYQGGNNS MTFYDNGTYK ASWNGTNDFL 

       370        380        390        400        410        420 
ARVGFKYDEK HTYEELGPID AYYKWSKQGS AGGYNYIGIY GWTVDPLVEY YIVDDWFNKP 

       430        440        450        460        470        480 
GANLLGQRKG EFTVDGDTYE IWQNTRVQQP SIKGTQTFPQ YFSVRKSARS CGHIDITAHM 

       490        500        510        520        530        540 
KKWEELGMKM GKMYEAKVLV EAGGGSGSFD VTYFKMTDKA HPLAQPEPES SSSEAKVESS 

       550        560        570        580        590        600 
SSTVALHAAP KMELKSGNFQ VFDMQGRFLG TVKLDAGASV AQVLKANFKN AGIYMVKQGN 


FMQRVAVK 

« Hide

References

[1]"The xynC gene from Fibrobacter succinogenes S85 codes for a xylanase with two similar catalytic domains."
Paradis F.W., Zhu H., Krell P.J., Phillips J.P., Forsberg C.W.
J. Bacteriol. 175:7666-7672(1993) [PubMed: 8244936] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF 26-41.
Strain: S85 / ATCC 19169.

Cross-references

Sequence databases

U01037 Genomic DNA. Translation: AAA21848.1.
PIRB53295.

3D structure databases

HSSPHSSP built from PDB template 1XYN based on UniProtKB P36218.
ModBaseSearch...

Protein family/group databases

CAZyGH11. Glycoside Hydrolase Family 11.

Enzyme and pathway databases

BRENDA3.2.1.8. 15235.

Family and domain databases

InterProIPR001137. Glyco_hydro_11.
IPR013319. Glyco_hydro_11/12_cat.
IPR018208. Glyco_hydro_11_AS.
[Graphical view]
Gene3DG3DSA:2.60.120.180. Glyco_hydro_11/12_cat. 2 hits.
PfamPF00457. Glyco_hydro_11. 2 hits.
[Graphical view]
PRINTSPR00911. GLHYDRLASE11.
PROSITEPS00776. GLYCOSYL_HYDROL_F11_1. 1 hit.
PS00777. GLYCOSYL_HYDROL_F11_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameXYNC_FIBSU
AccessionPrimary (citable) accession number: P35811
Entry history
Integrated into UniProtKB/Swiss-Prot: June 1, 1994
Last sequence update: June 1, 1994
Last modified: April 14, 2009
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

Glycosyl hydrolases

Classification of glycosyl hydrolase families and list of entries

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents