P35739 (NTRK1_RAT) Reviewed, UniProtKB/Swiss-Prot
Last modified
April 3, 2013.
Version 134.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: High affinity nerve growth factor receptor EC=2.7.10.1 Alternative name(s): Neurotrophic tyrosine kinase receptor type 1 Slow nerve growth factor receptor p140-TrkA Short name=Trk-A | ||||
| Gene names |
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| Organism | Rattus norvegicus (Rat) [Reference proteome] | ||||
| Taxonomic identifier | 10116 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus![]() |
Protein attributes
| Sequence length | 799 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Receptor tyrosine kinase involved in the development and the maturation of the central and peripheral nervous systems through regulation of proliferation, differentiation and survival of sympathetic and nervous neurons. High affinity receptor for NGF which is its primary ligand, it can also bind and be activated by NTF3/neurotrophin-3. However, NTF3 only supports axonal extension through NTRK1 but has no effect on neuron survival. Upon dimeric NGF ligand-binding, undergoes homodimerization, autophosphorylation and activation. Recruits, phosphorylates and/or activates several downstream effectors including SHC1, FRS2, SH2B1, SH2B2 and PLCG1 that regulate distinct overlapping signaling cascades driving cell survival and differentiation. Through SHC1 and FRS2 activates a GRB2-Ras-MAPK cascade that regulates cell differentiation and survival. Through PLCG1 controls NF-Kappa-B activation and the transcription of genes involved in cell survival. Through SHC1 and SH2B1 controls a Ras-PI3 kinase-AKT1 signaling cascade that is also regulating survival. In absence of ligand and activation, may promote cell death, making the survival of neurons dependent on trophic factors. Ref.13 |
| Catalytic activity | ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphate. |
| Enzyme regulation | The pro-survival signaling effect of NTRK1 in neurons requires its endocytosis into signaling early endosomes and its retrograde axonal transport. This is regulated by different proteins including CFL1, RAC1 and SORT1. NTF3 is unable to induce this signaling probably due to the lability of the NTF3-NTRK1 complex in endosomes By similarity. SH2D1A inhibits the autophosphorylation of the receptor, and alters the recruitment and activation of downstream effectors and signaling cascades. Regulated by NGFR By similarity. Ref.10 |
| Subunit structure | Exists in a dynamic equilibrium between monomeric (low affinity) and dimeric (high affinity) structures. Homodimerization is induced by binding of a NGF dimer By similarity. Interacts with SQSTM1; bridges NTRK1 to NGFR. Forms a ternary complex with NGFR and KIDINS220; this complex is affected by the expression levels of KIDINS220 and an increase in KIDINS220 expression leads to a decreased association of NGFR and NTRK1. Interacts (phosphorylated upon activation by NGF) with SHC1; mediates SHC1 phosphorylation and activation. Interacts (phosphorylated upon activation by NGF) with PLCG1; mediates PLCG1 phosphorylation and activation. Interacts (phosphorylated) with SH2B1 and SH2B2. Interacts with GRB2. Interacts with PIK3R1. Interacts with FRS2. Interacts with SORT1; may regulate NTRK1 anterograde axonal transport. Interacts with SH2D1A; regulates NTRK1. Interacts with NRADD. Interacts with RAB7A. Ref.3 Ref.4 Ref.5 Ref.6 Ref.7 Ref.8 Ref.9 Ref.10 Ref.11 Ref.12 |
| Subcellular location | Cell membrane; Single-pass type I membrane protein By similarity. Early endosome membrane; Single-pass type I membrane protein. Note: Internalized to endosomes upon binding of NGF or NTF3 and further transported to the cell body via a retrograde axonal transport. Ref.7 |
| Tissue specificity | Isoform Trka-II is primarily expressed in neuronal cells; isoform Trka-I is found in non-neuronal tissues. |
| Domain | The transmembrane domain mediates interaction with KIDINS220. Ref.7 Ref.8 Ref.9 The extracellular domain mediates interaction with NGFR. Ref.7 Ref.8 Ref.9 |
| Post-translational modification | Ligand-mediated autophosphorylation. Interaction with SQSTM1 is phosphotyrosine-dependent. Autophosphorylation at Tyr-499 mediates interaction and phosphorylation of SHC1. N-glycosylated By similarity. Ubiquitinated. Undergoes polyubiquitination upon activation; regulated by NGFR. Ubiquitination regulates the internalization of the receptor By similarity. |
| Sequence similarities | Belongs to the protein kinase superfamily. Tyr protein kinase family. Insulin receptor subfamily. Contains 2 Ig-like C2-type (immunoglobulin-like) domains. Contains 2 LRR (leucine-rich) repeats. Contains 1 LRRCT domain. Contains 1 protein kinase domain. |
Ontologies
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] Note: Both isoforms have similar biological properties. | ||||||
| Isoform TrkA-II (identifier: P35739-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform TrkA-I (identifier: P35739-2) The sequence of this isoform differs from the canonical sequence as follows: 396-401: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||
Molecule processing | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 32 | 32 | Potential | ||||||||
| Chain | 33 – 799 | 767 | High affinity nerve growth factor receptor | PRO_0000016725 | |||||||
Regions | |||||||||||
| Topological domain | 33 – 418 | 386 | Extracellular Potential | ||||||||
| Transmembrane | 419 – 442 | 24 | Helical; Potential | ||||||||
| Topological domain | 443 – 799 | 357 | Cytoplasmic Potential | ||||||||
| Repeat | 90 – 113 | 24 | LRR 1 | ||||||||
| Repeat | 116 – 137 | 22 | LRR 2 | ||||||||
| Domain | 148 – 219 | 72 | LRRCT | ||||||||
| Domain | 196 – 285 | 90 | Ig-like C2-type 1 | ||||||||
| Domain | 295 – 368 | 74 | Ig-like C2-type 2 | ||||||||
| Domain | 513 – 784 | 272 | Protein kinase | ||||||||
| Nucleotide binding | 519 – 527 | 9 | ATP By similarity | ||||||||
| Region | 472 – 493 | 22 | Interaction with SQSTM1 | ||||||||
Sites | |||||||||||
| Active site | 653 | 1 | Proton acceptor By similarity | ||||||||
| Binding site | 547 | 1 | ATP By similarity | ||||||||
| Site | 499 | 1 | Interaction with SHC1 By similarity | ||||||||
| Site | 794 | 1 | Interaction with PLCG1 By similarity | ||||||||
Amino acid modifications | |||||||||||
| Modified residue | 499 | 1 | Phosphotyrosine; by autocatalysis By similarity | ||||||||
| Modified residue | 679 | 1 | Phosphotyrosine; by autocatalysis By similarity | ||||||||
| Modified residue | 683 | 1 | Phosphotyrosine; by autocatalysis By similarity | ||||||||
| Modified residue | 684 | 1 | Phosphotyrosine; by autocatalysis By similarity | ||||||||
| Modified residue | 794 | 1 | Phosphotyrosine; by autocatalysis By similarity | ||||||||
| Glycosylation | 67 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 121 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 190 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 204 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 255 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 264 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 320 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 325 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 341 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 361 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 404 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Disulfide bond | 154 ↔ 193 | By similarity | |||||||||
| Disulfide bond | 217 ↔ 267 | By similarity | |||||||||
Natural variations | |||||||||||
| Alternative sequence | 396 – 401 | 6 | Missing in isoform TrkA-I. | VSP_002900 | |||||||
Experimental info | |||||||||||
| Mutagenesis | 527 | 1 | V → D: Loss of kinase activity. Ref.4 | ||||||||
Sequences
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References
| [1] | "The rat trk protooncogene product exhibits properties characteristic of the slow nerve growth factor receptor." Meakin S.O., Suter U., Drinkwater C.C., Welcher A.A., Shooter E.M. Proc. Natl. Acad. Sci. U.S.A. 89:2374-2378(1992) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM TRKA-II). |
| [2] | "Tissue-specific alternative splicing generates two isoforms of the trkA receptor." Barker P.A., Lomen-Hoerth C., Gensch E.M., Meakin S.O., Glass D.J., Shooter E.M. J. Biol. Chem. 268:15150-15157(1993) [PubMed] [Europe PMC] [Abstract] Cited for: ALTERNATIVE SPLICING (ISOFORMS TRKA-I AND TRKA-II). |
| [3] | "Trk receptors use redundant signal transduction pathways involving SHC and PLC-gamma 1 to mediate NGF responses." Stephens R.M., Loeb D.M., Copeland T.D., Pawson T., Greene L.A., Kaplan D.R. Neuron 12:691-705(1994) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH SHC1. |
| [4] | "Identification and characterization of novel substrates of Trk receptors in developing neurons." Qian X., Riccio A., Zhang Y., Ginty D.D. Neuron 21:1017-1029(1998) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH PLCG1; SHC1; SH2B1 AND SH2B2, MUTAGENESIS OF VAL-527. |
| [5] | "The atypical protein kinase C-interacting protein p62 is a scaffold for NF-kappaB activation by nerve growth factor." Wooten M.W., Seibenhener M.L., Mamidipudi V., Diaz-Meco M.T., Barker P.A., Moscat J. J. Biol. Chem. 276:7709-7712(2001) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH SQSTM1. |
| [6] | "An evolutionarily conserved transmembrane protein that is a novel downstream target of neurotrophin and ephrin receptors." Kong H., Boulter J., Weber J.L., Lai C., Chao M.V. J. Neurosci. 21:176-185(2001) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH KIDINS220. |
| [7] | "Association of the atypical protein kinase C-interacting protein p62/ZIP with nerve growth factor receptor TrkA regulates receptor trafficking and Erk5 signaling." Geetha T., Wooten M.W. J. Biol. Chem. 278:4730-4739(2003) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH SQSTM1, SUBCELLULAR LOCATION, DOMAIN. |
| [8] | "A unique pathway for sustained neurotrophin signaling through an ankyrin-rich membrane-spanning protein." Arevalo J.C., Yano H., Teng K.K., Chao M.V. EMBO J. 23:2358-2368(2004) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH KIDINS220, DOMAIN. |
| [9] | "Ternary complex with Trk, p75, and an ankyrin-rich membrane spanning protein." Chang M.-S., Arevalo J.C., Chao M.V. J. Neurosci. Res. 78:186-192(2004) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH NGFR AND KIDINS220, DOMAIN. |
| [10] | "SLAM-associated protein as a potential negative regulator in Trk signaling." Lo K.Y., Chin W.H., Ng Y.P., Cheng A.W., Cheung Z.H., Ip N.Y. J. Biol. Chem. 280:41744-41752(2005) [PubMed] [Europe PMC] [Abstract] Cited for: ENZYME REGULATION, INTERACTION WITH SH2D1A. |
| [11] | "The small GTPase Rab7 controls the endosomal trafficking and neuritogenic signaling of the nerve growth factor receptor TrkA." Saxena S., Bucci C., Weis J., Kruttgen A. J. Neurosci. 25:10930-10940(2005) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH RAB7A. |
| [12] | "Neurotrophin receptor homolog-2 regulates nerve growth factor signaling." Wong A.W., Willingham M., Xiao J., Kilpatrick T.J., Murray S.S. J. Neurochem. 106:1964-1976(2008) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH NRADD. |
| [13] | "Neurotrophin receptors TrkA and TrkC cause neuronal death whereas TrkB does not." Nikoletopoulou V., Lickert H., Frade J.M., Rencurel C., Giallonardo P., Zhang L., Bibel M., Barde Y.A. Nature 467:59-63(2010) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION IN CELL DEATH. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | M85214 mRNA. Translation: AAA42286.1. L12225 Genomic DNA. No translation available. |
| IPI | IPI00201638. IPI00231206. |
| PIR | TVRTTB. A41981. |
| RefSeq | NP_067600.1. NM_021589.1. |
| UniGene | Rn.39098. |
3D structure databases | |
| ProteinModelPortal | P35739. |
| SMR | P35739. Positions 36-385. |
| ModBase | Search... |
Protein-protein interaction databases | |
| DIP | DIP-5716N. |
| IntAct | P35739. 1 interaction. |
| MINT | MINT-191667. |
PTM databases | |
| PhosphoSite | P35739. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENSRNOT00000018961; ENSRNOP00000018961; ENSRNOG00000013953. ENSRNOT00000044046; ENSRNOP00000048885; ENSRNOG00000013953. |
| GeneID | 59109. |
| KEGG | rno:59109. |
| UCSC | RGD:620144. rat. |
Organism-specific databases | |
| CTD | 4914. |
| RGD | 620144. Ntrk1. |
Phylogenomic databases | |
| eggNOG | COG0515. |
| GeneTree | ENSGT00700000104172. |
| HOGENOM | HOG000264255. |
| HOVERGEN | HBG056735. |
| InParanoid | P35739. |
| KO | K03176. |
| OMA | CPDACCP. |
| OrthoDB | EOG4J3WGJ. |
Enzyme and pathway databases | |
| BRENDA | 2.7.10.1. 5301. |
| Reactome | REACT_111984. Signal Transduction. |
Gene expression databases | |
| Genevestigator | P35739. |
| GermOnline | ENSRNOG00000013953. Rattus norvegicus. |
Family and domain databases | |
| Gene3D | 2.60.40.10. 2 hits. |
| InterPro | IPR007110. Ig-like_dom. IPR013783. Ig-like_fold. IPR003599. Ig_sub. IPR011009. Kinase-like_dom. IPR000719. Prot_kinase_cat_dom. IPR017441. Protein_kinase_ATP_BS. IPR001245. Ser-Thr/Tyr_kinase_cat_dom. IPR008266. Tyr_kinase_AS. IPR020635. Tyr_kinase_cat_dom. IPR020461. Tyr_kinase_neurotrophic_rcpt_1. IPR020777. Tyr_kinase_NGF_rcpt. IPR002011. Tyr_kinase_rcpt_2_CS. [Graphical view] |
| Pfam | PF07714. Pkinase_Tyr. 1 hit. [Graphical view] |
| PRINTS | PR01939. NTKRECEPTOR. PR01940. NTKRECEPTOR1. PR00109. TYRKINASE. |
| SMART | SM00409. IG. 1 hit. SM00219. TyrKc. 1 hit. [Graphical view] |
| SUPFAM | SSF56112. Kinase_like. 1 hit. |
| PROSITE | PS50835. IG_LIKE. 1 hit. PS00107. PROTEIN_KINASE_ATP. 1 hit. PS50011. PROTEIN_KINASE_DOM. 1 hit. PS00109. PROTEIN_KINASE_TYR. 1 hit. PS00239. RECEPTOR_TYR_KIN_II. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChEMBL | CHEMBL4220. |
| NextBio | 611747. |
Entry information
| Entry name | NTRK1_RAT | ||||||||
| Accession | Primary (citable) accession number: P35739 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
Relevant documents
| SIMILARITY comments Index of protein domains and families |

Clusters with
