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Protein

60S ribosomal protein L7a-1

Gene

RPL7A-1

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-OSA-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-OSA-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-OSA-72689. Formation of a pool of free 40S subunits.
R-OSA-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-OSA-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-OSA-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L7a-1
Gene namesi
Name:RPL7A-1
Ordered Locus Names:Os08g0326400, LOC_Os08g23710
ORF Names:OJ1136_A10.108, P0703C03.43
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
Proteomesi
  • UP000059680 Componenti: Chromosome 8

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 25825860S ribosomal protein L7a-1PRO_0000136758Add
BLAST

Proteomic databases

PaxDbiP35685.

Expressioni

Gene expression databases

ExpressionAtlasiP35685. baseline and differential.
GenevisibleiP35685. OS.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os09g32976.1.

Structurei

3D structure databases

ProteinModelPortaliP35685.
SMRiP35685. Positions 97-215.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L7Ae family.Curated

Phylogenomic databases

eggNOGiKOG3166. Eukaryota.
COG1358. LUCA.
InParanoidiP35685.
OrthoDBiEOG09360K6F.

Family and domain databases

Gene3Di3.30.1330.30. 1 hit.
InterProiIPR029064. L30e-like.
IPR001921. Ribosomal_L7A/L8.
IPR004038. Ribosomal_L7Ae/L30e/S12e/Gad45.
IPR018492. Ribosomal_L7Ae/L8/Nhp2.
IPR004037. Ribosomal_L7Ae_CS.
[Graphical view]
PfamiPF01248. Ribosomal_L7Ae. 1 hit.
[Graphical view]
PRINTSiPR00881. L7ARS6FAMILY.
PR00882. RIBOSOMALL7A.
SUPFAMiSSF55315. SSF55315. 1 hit.
PROSITEiPS01082. RIBOSOMAL_L7AE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P35685-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPKRGGRAP VPAKKKTEKV TNPLFEKRPK QFGIGGALPP KKDLHRFVKW
60 70 80 90 100
PKVVRIQRQR RILKQRLKVP PALNQFTRTL DKNLATNLFK MLLKYRPEDK
110 120 130 140 150
AAKKERLLKR AQAEAEGKTV EAKKPIVVKY GLNHVTYLIE QSKAQLVVIA
160 170 180 190 200
HDVDPIELVV WLPALCRKME VPYCIVKGKA RLGSIVHKKT ASVLCLTTVK
210 220 230 240 250
NEDKLEFSKI LEAIKANFND KFDEVRKKWG GGVMGSKSQA KTKAREKLLA

KEAAQRMT
Length:258
Mass (Da):29,304
Last modified:June 1, 1994 - v1
Checksum:iD57511FC45745970
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D12631 mRNA. Translation: BAA02156.1.
AP003884 Genomic DNA. Translation: BAD01672.1.
AP004637 Genomic DNA. Translation: BAD03264.1.
AP008214 Genomic DNA. Translation: BAF23464.1.
AP014964 Genomic DNA. Translation: BAT04904.1.
AK062210 mRNA. Translation: BAG88244.1.
AK121204 mRNA. Translation: BAH00365.1.
PIRiS38360.
RefSeqiXP_015611976.1. XM_015756490.1.
XP_015650875.1. XM_015795389.1.
UniGeneiOs.60596.
Os.96316.

Genome annotation databases

EnsemblPlantsiOS08T0326400-01; OS08T0326400-01; OS08G0326400.
OS09T0507800-01; OS09T0507800-01; OS09G0507800.
GeneIDi4345279.
4347522.
GrameneiOS08T0326400-01; OS08T0326400-01; OS08G0326400.
OS09T0507800-01; OS09T0507800-01; OS09G0507800.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D12631 mRNA. Translation: BAA02156.1.
AP003884 Genomic DNA. Translation: BAD01672.1.
AP004637 Genomic DNA. Translation: BAD03264.1.
AP008214 Genomic DNA. Translation: BAF23464.1.
AP014964 Genomic DNA. Translation: BAT04904.1.
AK062210 mRNA. Translation: BAG88244.1.
AK121204 mRNA. Translation: BAH00365.1.
PIRiS38360.
RefSeqiXP_015611976.1. XM_015756490.1.
XP_015650875.1. XM_015795389.1.
UniGeneiOs.60596.
Os.96316.

3D structure databases

ProteinModelPortaliP35685.
SMRiP35685. Positions 97-215.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os09g32976.1.

Proteomic databases

PaxDbiP35685.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS08T0326400-01; OS08T0326400-01; OS08G0326400.
OS09T0507800-01; OS09T0507800-01; OS09G0507800.
GeneIDi4345279.
4347522.
GrameneiOS08T0326400-01; OS08T0326400-01; OS08G0326400.
OS09T0507800-01; OS09T0507800-01; OS09G0507800.

Phylogenomic databases

eggNOGiKOG3166. Eukaryota.
COG1358. LUCA.
InParanoidiP35685.
OrthoDBiEOG09360K6F.

Enzyme and pathway databases

ReactomeiR-OSA-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-OSA-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-OSA-72689. Formation of a pool of free 40S subunits.
R-OSA-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-OSA-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-OSA-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Gene expression databases

ExpressionAtlasiP35685. baseline and differential.
GenevisibleiP35685. OS.

Family and domain databases

Gene3Di3.30.1330.30. 1 hit.
InterProiIPR029064. L30e-like.
IPR001921. Ribosomal_L7A/L8.
IPR004038. Ribosomal_L7Ae/L30e/S12e/Gad45.
IPR018492. Ribosomal_L7Ae/L8/Nhp2.
IPR004037. Ribosomal_L7Ae_CS.
[Graphical view]
PfamiPF01248. Ribosomal_L7Ae. 1 hit.
[Graphical view]
PRINTSiPR00881. L7ARS6FAMILY.
PR00882. RIBOSOMALL7A.
SUPFAMiSSF55315. SSF55315. 1 hit.
PROSITEiPS01082. RIBOSOMAL_L7AE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL7A1_ORYSJ
AccessioniPrimary (citable) accession number: P35685
Secondary accession number(s): Q0J0I3, Q8H4Y2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 1, 1994
Last sequence update: June 1, 1994
Last modified: September 7, 2016
This is version 96 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.