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Protein

60S ribosomal protein L7a

Gene

RPL7A

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiREACT_284541. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_284743. GTP hydrolysis and joining of the 60S ribosomal subunit.
REACT_294537. SRP-dependent cotranslational protein targeting to membrane.
REACT_302001. L13a-mediated translational silencing of Ceruloplasmin expression.
REACT_304736. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_320638. Formation of a pool of free 40S subunits.
REACT_322398. Eukaryotic Translation Termination.
REACT_323380. Peptide chain elongation.

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L7a
Gene namesi
Name:RPL7A
Ordered Locus Names:Os08g0326400, LOC_Os08g23710
ORF Names:OJ1136_A10.108, P0703C03.43
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
ProteomesiUP000000763 Componenti: Chromosome 8

Organism-specific databases

GrameneiP35685.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 25825860S ribosomal protein L7aPRO_0000136758Add
BLAST

Proteomic databases

PaxDbiP35685.

Expressioni

Gene expression databases

ExpressionAtlasiP35685. baseline.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os09g32976.1.

Structurei

3D structure databases

ProteinModelPortaliP35685.
SMRiP35685. Positions 97-215.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L7Ae family.Curated

Phylogenomic databases

eggNOGiCOG1358.
InParanoidiP35685.
KOiK02936.
OMAiPALCRKY.

Family and domain databases

Gene3Di3.30.1330.30. 1 hit.
InterProiIPR029064. L30e-like.
IPR001921. Ribosomal_L7A/L8.
IPR004038. Ribosomal_L7Ae/L30e/S12e/Gad45.
IPR018492. Ribosomal_L7Ae/L8/Nhp2.
IPR004037. Ribosomal_L7Ae_CS.
[Graphical view]
PANTHERiPTHR23105:SF1. PTHR23105:SF1. 1 hit.
PfamiPF01248. Ribosomal_L7Ae. 1 hit.
[Graphical view]
PRINTSiPR00881. L7ARS6FAMILY.
PR00882. RIBOSOMALL7A.
SUPFAMiSSF55315. SSF55315. 1 hit.
PROSITEiPS01082. RIBOSOMAL_L7AE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P35685-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPKRGGRAP VPAKKKTEKV TNPLFEKRPK QFGIGGALPP KKDLHRFVKW
60 70 80 90 100
PKVVRIQRQR RILKQRLKVP PALNQFTRTL DKNLATNLFK MLLKYRPEDK
110 120 130 140 150
AAKKERLLKR AQAEAEGKTV EAKKPIVVKY GLNHVTYLIE QSKAQLVVIA
160 170 180 190 200
HDVDPIELVV WLPALCRKME VPYCIVKGKA RLGSIVHKKT ASVLCLTTVK
210 220 230 240 250
NEDKLEFSKI LEAIKANFND KFDEVRKKWG GGVMGSKSQA KTKAREKLLA

KEAAQRMT
Length:258
Mass (Da):29,304
Last modified:June 1, 1994 - v1
Checksum:iD57511FC45745970
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D12631 mRNA. Translation: BAA02156.1.
AP003884 Genomic DNA. Translation: BAD01672.1.
AP004637 Genomic DNA. Translation: BAD03264.1.
PIRiS38360.
RefSeqiNP_001061550.1. NM_001068085.1.
NP_001063618.1. NM_001070153.1.
UniGeneiOs.60596.

Genome annotation databases

EnsemblPlantsiOS08T0326400-01; OS08T0326400-01; OS08G0326400.
OS09T0507800-01; OS09T0507800-01; OS09G0507800.
GeneIDi4345279.
4347522.
KEGGiosa:4345279.
osa:4347522.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D12631 mRNA. Translation: BAA02156.1.
AP003884 Genomic DNA. Translation: BAD01672.1.
AP004637 Genomic DNA. Translation: BAD03264.1.
PIRiS38360.
RefSeqiNP_001061550.1. NM_001068085.1.
NP_001063618.1. NM_001070153.1.
UniGeneiOs.60596.

3D structure databases

ProteinModelPortaliP35685.
SMRiP35685. Positions 97-215.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os09g32976.1.

Proteomic databases

PaxDbiP35685.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS08T0326400-01; OS08T0326400-01; OS08G0326400.
OS09T0507800-01; OS09T0507800-01; OS09G0507800.
GeneIDi4345279.
4347522.
KEGGiosa:4345279.
osa:4347522.

Organism-specific databases

GrameneiP35685.

Phylogenomic databases

eggNOGiCOG1358.
InParanoidiP35685.
KOiK02936.
OMAiPALCRKY.

Enzyme and pathway databases

ReactomeiREACT_284541. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_284743. GTP hydrolysis and joining of the 60S ribosomal subunit.
REACT_294537. SRP-dependent cotranslational protein targeting to membrane.
REACT_302001. L13a-mediated translational silencing of Ceruloplasmin expression.
REACT_304736. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_320638. Formation of a pool of free 40S subunits.
REACT_322398. Eukaryotic Translation Termination.
REACT_323380. Peptide chain elongation.

Gene expression databases

ExpressionAtlasiP35685. baseline.

Family and domain databases

Gene3Di3.30.1330.30. 1 hit.
InterProiIPR029064. L30e-like.
IPR001921. Ribosomal_L7A/L8.
IPR004038. Ribosomal_L7Ae/L30e/S12e/Gad45.
IPR018492. Ribosomal_L7Ae/L8/Nhp2.
IPR004037. Ribosomal_L7Ae_CS.
[Graphical view]
PANTHERiPTHR23105:SF1. PTHR23105:SF1. 1 hit.
PfamiPF01248. Ribosomal_L7Ae. 1 hit.
[Graphical view]
PRINTSiPR00881. L7ARS6FAMILY.
PR00882. RIBOSOMALL7A.
SUPFAMiSSF55315. SSF55315. 1 hit.
PROSITEiPS01082. RIBOSOMAL_L7AE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The primary structure of two proteins from the large ribosomal subunit of rice."
    Nishi R., Kidou S., Uchimiya H., Kato A.
    Biochim. Biophys. Acta 1216:110-112(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiRL7A_ORYSJ
AccessioniPrimary (citable) accession number: P35685
Secondary accession number(s): Q8H4Y2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 1, 1994
Last sequence update: June 1, 1994
Last modified: June 24, 2015
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.