P35625 (TIMP3_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 29, 2013.
Version 139.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Metalloproteinase inhibitor 3 Alternative name(s): Protein MIG-5 Tissue inhibitor of metalloproteinases 3 Short name=TIMP-3 | ||
| Gene names |
| ||
| Organism | Homo sapiens (Human) [Reference proteome] | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 211 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Complexes with metalloproteinases (such as collagenases) and irreversibly inactivates them by binding to their catalytic zinc cofactor. May form part of a tissue-specific acute response to remodeling stimuli. Known to act on MMP-1, MMP-2, MMP-3, MMP-7, MMP-9, MMP-13, MMP-14 and MMP-15. |
| Subunit structure | Interacts with EFEMP1. Ref.16 |
| Subcellular location | |
| Involvement in disease | Sorsby fundus dystrophy (SFD) [MIM:136900]: Rare autosomal dominant macular disorder with an age of onset in the fourth decade. It is characterized by loss of central vision from subretinal neovascularization and atrophy of the ocular tissues. Generally, macular disciform degeneration develops in the patients eye within 6 months to 6 years. |
| Sequence similarities | Belongs to the protease inhibitor I35 (TIMP) family. [View classification] Contains 1 NTR domain. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Sensory transduction Vision |
| Cellular component | Extracellular matrix Secreted |
| Disease | Disease mutation |
| Domain | Signal |
| Ligand | Metal-binding Zinc |
| Molecular function | Metalloenzyme inhibitor Metalloprotease inhibitor Protease inhibitor |
| PTM | Disulfide bond |
| Technical term | 3D-structure Complete proteome Direct protein sequencing Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | cellular response to organic substance Inferred from electronic annotation. Source: Compara negative regulation of membrane protein ectodomain proteolysisInferred from mutant phenotype PubMed 18383040. Source: BHF-UCL visual perceptionInferred from electronic annotation. Source: UniProtKB-KW |
| Cellular_component | basement membrane Inferred from electronic annotation. Source: Compara |
| Molecular_function | metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW metalloendopeptidase inhibitor activityTraceable author statement Ref.17. Source: BHF-UCL |
| Complete GO annotation... | |
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| AGTR2 | P50052 | 7 | EBI-1748085,EBI-1748067 |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||||||||||||||||||
Molecule processing | |||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 23 | 23 | Ref.14 | ||||||||||||||||||||||||||||||||
| Chain | 24 – 211 | 188 | Metalloproteinase inhibitor 3 | PRO_0000034341 | |||||||||||||||||||||||||||||||
Regions | |||||||||||||||||||||||||||||||||||
| Domain | 24 – 143 | 120 | NTR | ||||||||||||||||||||||||||||||||
| Region | 24 – 28 | 5 | Involved in metalloproteinase-binding | ||||||||||||||||||||||||||||||||
| Region | 88 – 89 | 2 | Involved in metalloproteinase-binding | ||||||||||||||||||||||||||||||||
| Region | 105 – 188 | 84 | Mediates interaction with EFEMP1 | ||||||||||||||||||||||||||||||||
Sites | |||||||||||||||||||||||||||||||||||
| Metal binding | 24 | 1 | Zinc; via amino nitrogen and carbonyl oxygen; shared with metalloproteinase partner | ||||||||||||||||||||||||||||||||
Amino acid modifications | |||||||||||||||||||||||||||||||||||
| Disulfide bond | 24 ↔ 91 | Ref.17 | |||||||||||||||||||||||||||||||||
| Disulfide bond | 26 ↔ 118 | Ref.17 | |||||||||||||||||||||||||||||||||
| Disulfide bond | 36 ↔ 143 | Ref.17 | |||||||||||||||||||||||||||||||||
| Disulfide bond | 145 ↔ 192 | By similarity | |||||||||||||||||||||||||||||||||
| Disulfide bond | 150 ↔ 155 | By similarity | |||||||||||||||||||||||||||||||||
| Disulfide bond | 163 ↔ 184 | By similarity | |||||||||||||||||||||||||||||||||
Natural variations | |||||||||||||||||||||||||||||||||||
| Natural variant | 179 | 1 | S → C in SFD. Ref.19 | VAR_007508 | |||||||||||||||||||||||||||||||
| Natural variant | 189 | 1 | G → C in SFD. Ref.22 | VAR_008290 | |||||||||||||||||||||||||||||||
| Natural variant | 190 | 1 | G → C in SFD. Ref.20 | VAR_010901 | |||||||||||||||||||||||||||||||
| Natural variant | 191 | 1 | Y → C in SFD. Ref.18 Ref.21 | VAR_007509 | |||||||||||||||||||||||||||||||
| Natural variant | 204 | 1 | S → C in SFD. Ref.18 | VAR_007510 | |||||||||||||||||||||||||||||||
Experimental info | |||||||||||||||||||||||||||||||||||
| Sequence conflict | 16 – 23 | 8 | LGDWGAEA → WGTGAPR in CAA82918. Ref.4 | ||||||||||||||||||||||||||||||||
| Sequence conflict | 21 – 22 | 2 | AE → R in AAA21815. Ref.13 | ||||||||||||||||||||||||||||||||
Secondary structure | |||||||||||||||||||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||||||||||||||||||
| Helix | 31 – 37 | 7 | |||||||||||||||||||||||||||||||||
| Beta strand | 39 – 42 | 4 | |||||||||||||||||||||||||||||||||
| Beta strand | 45 – 52 | 8 | |||||||||||||||||||||||||||||||||
| Beta strand | 55 – 57 | 3 | |||||||||||||||||||||||||||||||||
| Beta strand | 59 – 65 | 7 | |||||||||||||||||||||||||||||||||
| Beta strand | 69 – 71 | 3 | |||||||||||||||||||||||||||||||||
| Turn | 73 – 75 | 3 | |||||||||||||||||||||||||||||||||
| Beta strand | 76 – 78 | 3 | |||||||||||||||||||||||||||||||||
| Beta strand | 81 – 86 | 6 | |||||||||||||||||||||||||||||||||
| Helix | 88 – 90 | 3 | |||||||||||||||||||||||||||||||||
| Beta strand | 102 – 108 | 7 | |||||||||||||||||||||||||||||||||
| Turn | 124 – 126 | 3 | |||||||||||||||||||||||||||||||||
| Helix | 129 – 136 | 8 | |||||||||||||||||||||||||||||||||
| Turn | 137 – 140 | 4 | |||||||||||||||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Structure and expression in breast tumors of human TIMP-3, a new member of the metalloproteinase inhibitor family." Uria J.A., Ferrando A.A., Velasco G., Freije J.M., Lopez-Otin C. Cancer Res. 54:2091-2094(1994) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA]. Tissue: Mammary carcinoma. |
| [2] | "Cloning and characterization of human tissue inhibitor of metalloproteinases-3." Wilde C.G., Hawkins P.R., Coleman R.T., Levine W.B., Delegeane A.M., Okamoto P.M., Ito L.Y., Scott R.W., Seilhamer J.J. DNA Cell Biol. 13:711-718(1994) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA]. |
| [3] | "Cloning of cDNAs encoding human TIMP-3, a novel member of the tissue inhibitor of metalloproteinase family." Silbiger S.M., Jacobsen V.L., Cupples R.L., Koski R.A. Gene 141:293-297(1994) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA]. Tissue: Kidney. |
| [4] | "A novel member of human tissue inhibitor of metalloproteinases (TIMP) gene family is regulated during G1 progression, mitogenic stimulation, differentiation, and senescence." Wick M., Buerger C., Bruesselbach S., Lucibello F., Mueller R. J. Biol. Chem. 269:18953-18960(1994) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. |
| [5] | "Genomic organization of the human tissue inhibitor of metalloproteinases-3 (TIMP3)." Stoehr H., Roomp K., Felbor U., Weber B.H.F. Genome Res. 5:483-487(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. |
| [6] | "TIMP-3 is expressed in the human retinal pigment epithelium." Ruiz A.C., Brett P., Bok D. Biochem. Biophys. Res. Commun. 226:467-474(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA]. |
| [7] | "A genome annotation-driven approach to cloning the human ORFeome." Collins J.E., Wright C.L., Edwards C.A., Davis M.P., Grinham J.A., Cole C.G., Goward M.E., Aguado B., Mallya M., Mokrab Y., Huckle E.J., Beare D.M., Dunham I. Genome Biol. 5:R84.1-R84.11(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. |
| [8] | "Cloning of human full-length CDSs in BD Creator(TM) system donor vector." Kalnine N., Chen X., Rolfs A., Halleck A., Hines L., Eisenstein S., Koundinya M., Raphael J., Moreira D., Kelley T., LaBaer J., Lin Y., Phelan M., Farmer A. Submitted (MAY-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. |
| [9] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Placenta. |
| [10] | "The DNA sequence of human chromosome 22." Dunham I., Hunt A.R., Collins J.E., Bruskiewich R., Beare D.M., Clamp M., Smink L.J., Ainscough R., Almeida J.P., Babbage A.K., Bagguley C., Bailey J., Barlow K.F., Bates K.N., Beasley O.P., Bird C.P., Blakey S.E., Bridgeman A.M. Wright H.Nature 402:489-495(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [11] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [12] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Pancreas. |
| [13] | "Cloning of the cDNA encoding human tissue inhibitor of metalloproteinases-3 (TIMP-3) and mapping of the TIMP3 gene to chromosome 22." Apte S.S., Mattei M.-G., Olsen B.R. Genomics 19:86-90(1994) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 14-211. Tissue: Placenta. |
| [14] | "Identification and characterization of human tissue inhibitor of metalloproteinase-3 and detection of three additional metalloproteinase inhibitor activities in extracellular matrix." Kishnani N.S., Staskus P.W., Yang T.-T., Masiarz F.R., Hawkes S.P. Matrix Biol. 14:479-488(1995) [PubMed] [Europe PMC] [Abstract] Cited for: PROTEIN SEQUENCE OF 24-41. |
| [15] | "Cloning and partial structure of the gene encoding human tissue inhibitor of metalloproteinases-3." Hammani K., Henriet P.M., Silbiger S.M., DeClerck Y.A. Gene 170:287-288(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 42-211. Tissue: Placenta. |
| [16] | "Tissue inhibitor of metalloproteinases-3 (TIMP-3) is a binding partner of epithelial growth factor-containing fibulin-like extracellular matrix protein 1 (EFEMP1). Implications for macular degenerations." Klenotic P.A., Munier F.L., Marmorstein L.Y., Anand-Apte B. J. Biol. Chem. 279:30469-30473(2004) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH EFEMP1. |
| [17] | "Structural determinants of the ADAM inhibition by TIMP-3: crystal structure of the TACE-N-TIMP-3 complex." Wisniewska M., Goettig P., Maskos K., Belouski E., Winters D., Hecht R., Black R., Bode W. J. Mol. Biol. 381:1307-1319(2008) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.30 ANGSTROMS) OF 24-144 IN COMPLEX WITH TACE, DISULFIDE BONDS. |
| [18] | "Mutations in the tissue inhibitor of metalloproteinases-3 (TIMP3) in patients with Sorsby's fundus dystrophy." Weber B.H.F., Vogt G., Pruett R.C., Stoehr H., Felbor U. Nat. Genet. 8:352-356(1994) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS SFD CYS-191 AND CYS-204. |
| [19] | "A novel Ser156Cys mutation in the tissue inhibitor of metalloproteinases-3 (TIMP3) in Sorsby's fundus dystrophy with unusual clinical features." Felbor U., Stoehr H., Amann T., Schoenherr U., Weber B.H.F. Hum. Mol. Genet. 4:2415-2416(1995) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT SFD CYS-179. |
| [20] | "Night blindness in Sorsby's fundus dystrophy reversed by vitamin A." Jacobson S.G., Cideciyan A.V., Regunath G., Rodriguez F.J., Vandenburgh K., Sheffield V.C., Stone E.M. Nat. Genet. 11:27-32(1995) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT SFD CYS-190. |
| [21] | "A second independent Tyr168Cys mutation in the tissue inhibitor of metalloproteinases-3 (TIMP3) in Sorsby's fundus dystrophy." Felbor U., Stoehr H., Amann T., Schoenherr U., Apfelstedt-Sylla E., Weber B.H.F. J. Med. Genet. 33:233-236(1996) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT SFD CYS-191. |
| [22] | "Autosomal recessive Sorsby fundus dystrophy revisited: molecular evidence for dominant inheritance." Felbor U., Suvanto E.A., Forsius H.R., Eriksson A.W., Weber B.H. Am. J. Hum. Genet. 60:57-62(1997) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT SFD CYS-189. |
| + | Additional computationally mapped references. |
Web resources
| Mutations of the TIMP3 gene Retina International's Scientific Newsletter |
| GeneReviews |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | X76227 mRNA. Translation: CAA53813.1. S78453 mRNA. Translation: AAB34532.1. U14394 mRNA. Translation: AAB60373.1. U02571 mRNA. Translation: AAA17672.1. Z30183 Genomic DNA. Translation: CAA82918.1. U33114 U33113 Genomic DNA. Translation: AAC50393.1.U67195 mRNA. Translation: AAB07547.1. CR456593 mRNA. Translation: CAG30479.1. BT006848 mRNA. Translation: AAP35494.1. AK314871 mRNA. Translation: BAG37386.1. AL023282, Z98256 Genomic DNA. Translation: CAI17996.1. Z98256, AL023282 Genomic DNA. Translation: CAI20115.1. CH471095 Genomic DNA. Translation: EAW60038.1. BC014277 mRNA. Translation: AAH14277.1. L15078 mRNA. Translation: AAA21815.1. U38955 U38954 Genomic DNA. Translation: AAB17602.1. | ||||||||||||
| IPI | IPI00218247. | ||||||||||||
| PIR | S45317. | ||||||||||||
| RefSeq | NP_000353.1. NM_000362.4. | ||||||||||||
| UniGene | Hs.644633. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
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| ProteinModelPortal | P35625. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| IntAct | P35625. 2 interactions. | ||||||||||||
| STRING | 9606.ENSP00000266085. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | P35625. | ||||||||||||
Polymorphism databases | |||||||||||||
| DMDM | 730948. | ||||||||||||
Proteomic databases | |||||||||||||
| PaxDb | P35625. | ||||||||||||
| PRIDE | P35625. | ||||||||||||
Protocols and materials databases | |||||||||||||
| DNASU | 7078. | ||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000266085; ENSP00000266085; ENSG00000100234. | ||||||||||||
| GeneID | 7078. | ||||||||||||
| KEGG | hsa:7078. | ||||||||||||
| UCSC | uc003anb.3. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 7078. | ||||||||||||
| GeneCards | GC22P033196. | ||||||||||||
| HGNC | HGNC:11822. TIMP3. | ||||||||||||
| HPA | CAB022187. | ||||||||||||
| MIM | 136900. phenotype. 188826. gene. | ||||||||||||
| neXtProt | NX_P35625. | ||||||||||||
| Orphanet | 59181. Sorsby's fundus dystrophy. | ||||||||||||
| PharmGKB | PA36528. | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | NOG250837. | ||||||||||||
| HOGENOM | HOG000285981. | ||||||||||||
| HOVERGEN | HBG068749. | ||||||||||||
| InParanoid | P35625. | ||||||||||||
| KO | K16866. | ||||||||||||
| OMA | KEGYCSW. | ||||||||||||
| OrthoDB | EOG47D9H3. | ||||||||||||
| PhylomeDB | P35625. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | P35625. | ||||||||||||
| Bgee | P35625. | ||||||||||||
| CleanEx | HS_TIMP3. | ||||||||||||
| Genevestigator | P35625. | ||||||||||||
| GermOnline | ENSG00000100234. Homo sapiens. | ||||||||||||
Family and domain databases | |||||||||||||
| Gene3D | 3.90.370.10. 1 hit. | ||||||||||||
| InterPro | IPR001134. Netrin_domain. IPR001820. Prot_inh_TIMP. IPR008993. TIMP-like_OB-fold. IPR027465. TIMP_C_dom. IPR015612. Tissue_inhib_metalloprotease_3. [Graphical view] | ||||||||||||
| PANTHER | PTHR11844. PTHR11844. 1 hit. PTHR11844:SF6. PTHR11844:SF6. 1 hit. | ||||||||||||
| Pfam | PF00965. TIMP. 1 hit. [Graphical view] | ||||||||||||
| SMART | SM00206. NTR. 1 hit. [Graphical view] | ||||||||||||
| SUPFAM | SSF50242. TIMP_like. 1 hit. | ||||||||||||
| PROSITE | PS50189. NTR. 1 hit. PS00288. TIMP. 1 hit. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| EvolutionaryTrace | P35625. | ||||||||||||
| GenomeRNAi | 7078. | ||||||||||||
| NextBio | 27685. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | TIMP3_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P35625 Secondary accession number(s): B2RBY9 Q9UGS2 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 22 Human chromosome 22: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
