UniProtKB - P35546 (RET_MOUSE)
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Protein
Proto-oncogene tyrosine-protein kinase receptor Ret
Gene
Ret
Organism
Mus musculus (Mouse)
Status
Functioni
Receptor tyrosine-protein kinase involved in numerous cellular mechanisms including cell proliferation, neuronal navigation, cell migration, and cell differentiation upon binding with glial cell derived neurotrophic factor family ligands. Phosphorylates PTK2/FAK1. Regulates both cell death/survival balance and positional information. Required for the molecular mechanisms orchestration during intestine organogenesis; involved in the development of enteric nervous system and renal organogenesis during embryonic life, and promotes the formation of Peyer's patch-like structures, a major component of the gut-associated lymphoid tissue. Modulates cell adhesion via its cleavage by caspase in sympathetic neurons and mediates cell migration in an integrin (e.g. ITGB1 and ITGB3)-dependent manner. Involved in the development of the neural crest. Active in the absence of ligand, triggering apoptosis through a mechanism that requires receptor intracellular caspase cleavage. Acts as a dependence receptor; in the presence of the ligand GDNF in somatotrophs (within pituitary), promotes survival and down regulates growth hormone (GH) production, but triggers apoptosis in absence of GDNF. Regulates nociceptor survival and size. Triggers the differentiation of rapidly adapting (RA) mechanoreceptors. Mediator of several diseases such as neuroendocrine cancers; these diseases are characterized by aberrant integrins-regulated cell migration.2 Publications
Miscellaneous
Treatment with withaferin A (WA) leads tumor regression in medullary thyroid carcinomas (MTC).
Catalytic activityi
ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphate.PROSITE-ProRule annotation
Enzyme regulationi
Repressed by withaferin A (WA).1 Publication
Sites
| Feature key | Position(s) | DescriptionActions | Graphical view | Length |
|---|---|---|---|---|
| Binding sitei | 759 | ATPPROSITE-ProRule annotation | 1 | |
| Active sitei | 875 | Proton acceptorPROSITE-ProRule annotation | 1 | |
| Binding sitei | 893 | InhibitorBy similarity | 1 |
Regions
| Feature key | Position(s) | DescriptionActions | Graphical view | Length |
|---|---|---|---|---|
| Nucleotide bindingi | 731 – 739 | ATPPROSITE-ProRule annotation | 9 |
GO - Molecular functioni
- ATP binding Source: UniProtKB-KW
- calcium ion binding Source: MGI
- transmembrane receptor protein tyrosine kinase activity Source: MGI
GO - Biological processi
- activation of cysteine-type endopeptidase activity involved in apoptotic process Source: MGI
- anatomical structure morphogenesis Source: MGI
- cellular response to retinoic acid Source: MGI
- embryonic epithelial tube formation Source: MGI
- enteric nervous system development Source: MGI
- homophilic cell adhesion via plasma membrane adhesion molecules Source: InterPro
- innervation Source: Ensembl
- MAPK cascade Source: MGI
- membrane protein proteolysis Source: MGI
- nervous system development Source: MGI
- neural crest cell migration Source: MGI
- neuron cell-cell adhesion Source: UniProtKB
- neuron differentiation Source: MGI
- neuron maturation Source: MGI
- Peyer's patch morphogenesis Source: UniProtKB
- positive regulation of cell adhesion mediated by integrin Source: MGI
- positive regulation of cell migration Source: MGI
- positive regulation of cell size Source: MGI
- positive regulation of extrinsic apoptotic signaling pathway in absence of ligand Source: MGI
- positive regulation of gene expression Source: MGI
- positive regulation of metanephric glomerulus development Source: UniProtKB
- positive regulation of neuron maturation Source: Ensembl
- positive regulation of neuron projection development Source: MGI
- positive regulation of peptidyl-serine phosphorylation of STAT protein Source: MGI
- positive regulation of transcription, DNA-templated Source: UniProtKB
- regulation of axonogenesis Source: MGI
- regulation of cell adhesion Source: MGI
- response to drug Source: Ensembl
- response to pain Source: UniProtKB
- retina development in camera-type eye Source: Ensembl
- transmembrane receptor protein tyrosine kinase signaling pathway Source: MGI
- ureteric bud development Source: MGI
- ureter maturation Source: MGI
Keywordsi
| Molecular function | Kinase, Transferase, Tyrosine-protein kinase |
| Biological process | Cell adhesion |
| Ligand | ATP-binding, Nucleotide-binding |
Enzyme and pathway databases
| BRENDAi | 2.7.10.1. 3474. |
| Reactomei | R-MMU-5673001. RAF/MAP kinase cascade. R-MMU-8853659. RET signaling. |
Names & Taxonomyi
| Protein namesi | Recommended name: Proto-oncogene tyrosine-protein kinase receptor Ret (EC:2.7.10.1)Alternative name(s): Proto-oncogene c-Ret Cleaved into the following 2 chains: |
| Gene namesi | Name:Ret |
| Organismi | Mus musculus (Mouse) |
| Taxonomic identifieri | 10090 [NCBI] |
| Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Mus › Mus |
| Proteomesi |
|
Organism-specific databases
| MGIi | MGI:97902. Ret. |
Subcellular locationi
- Cell membrane; Single-pass type I membrane protein
- Endosome membrane By similarity; Single-pass type I membrane protein By similarity
Topology
| Feature key | Position(s) | DescriptionActions | Graphical view | Length |
|---|---|---|---|---|
| Topological domaini | 29 – 637 | ExtracellularSequence analysisAdd BLAST | 609 | |
| Transmembranei | 638 – 659 | HelicalSequence analysisAdd BLAST | 22 | |
| Topological domaini | 660 – 1115 | CytoplasmicSequence analysisAdd BLAST | 456 |
GO - Cellular componenti
- axon Source: Ensembl
- cytosol Source: MGI
- dendrite Source: Ensembl
- early endosome Source: Ensembl
- endosome membrane Source: MGI
- integral component of plasma membrane Source: MGI
- intracellular membrane-bounded organelle Source: MGI
- membrane raft Source: Ensembl
- neuronal cell body Source: Ensembl
- plasma membrane Source: MGI
- plasma membrane protein complex Source: MGI
- receptor complex Source: MGI
Keywords - Cellular componenti
Cell membrane, Endosome, MembranePathology & Biotechi
Disruption phenotypei
Exclusive loss in nociceptors results in a reduction in nociceptor number and size with a reduced epidermal innervation, but increased sensitivity to cold and increased formalin-induced pain.1 Publication
Mutagenesis
| Feature key | Position(s) | DescriptionActions | Graphical view | Length |
|---|---|---|---|---|
| Mutagenesisi | 1063 | Y → F: Abolishes interaction with DOK proteins. 1 Publication | 1 |
Keywords - Diseasei
Proto-oncogeneChemistry databases
| ChEMBLi | CHEMBL2034799. |
PTM / Processingi
Molecule processing
| Feature key | Position(s) | DescriptionActions | Graphical view | Length |
|---|---|---|---|---|
| Signal peptidei | 1 – 28 | Sequence analysisAdd BLAST | 28 | |
| ChainiPRO_0000024451 | 29 – 1115 | Proto-oncogene tyrosine-protein kinase receptor RetAdd BLAST | 1087 | |
| ChainiPRO_0000415294 | 29 – 708 | Extracellular cell-membrane anchored RET cadherin 120 kDa fragmentBy similarityAdd BLAST | 680 | |
| ChainiPRO_0000415295 | 709 – 1018 | Soluble RET kinase fragmentBy similarityAdd BLAST | 310 |
Amino acid modifications
| Feature key | Position(s) | DescriptionActions | Graphical view | Length |
|---|---|---|---|---|
| Glycosylationi | 89 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
| Glycosylationi | 98 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
| Disulfide bondi | 137 ↔ 142 | By similarity | ||
| Glycosylationi | 151 | N-linked (GlcNAc...) asparagineBy similarity | 1 | |
| Glycosylationi | 156 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
| Glycosylationi | 199 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
| Glycosylationi | 345 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
| Glycosylationi | 360 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
| Glycosylationi | 378 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
| Glycosylationi | 396 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
| Glycosylationi | 450 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
| Glycosylationi | 470 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
| Glycosylationi | 556 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
| Modified residuei | 697 | PhosphoserineBy similarity | 1 | |
| Modified residuei | 807 | Phosphotyrosine; by autocatalysisBy similarity | 1 | |
| Modified residuei | 810 | Phosphotyrosine; by autocatalysisBy similarity | 1 | |
| Modified residuei | 901 | Phosphotyrosine; by autocatalysisBy similarity | 1 | |
| Modified residuei | 906 | Phosphotyrosine; by autocatalysisBy similarity | 1 | |
| Modified residuei | 982 | Phosphotyrosine; by autocatalysisBy similarity | 1 | |
| Modified residuei | 1016 | Phosphotyrosine; by autocatalysisBy similarity | 1 | |
| Modified residuei | 1063 | Phosphotyrosine; by autocatalysis1 Publication | 1 | |
| Modified residuei | 1091 | Phosphotyrosine; by autocatalysisBy similarity | 1 | |
| Modified residuei | 1097 | Phosphotyrosine; by autocatalysisBy similarity | 1 |
Post-translational modificationi
Autophosphorylated on C-terminal tyrosine residues upon ligand stimulation. Dephosphorylated by PTPRJ on Tyr-906, Tyr-1016 and Tyr-1063 (By similarity).By similarity
Proteolytically cleaved by caspase-3. The soluble RET kinase fragment is able to induce cell death. The extracellular cell-membrane anchored RET cadherin fragment accelerates cell adhesion in sympathetic neurons (By similarity).By similarity
Sites
| Feature key | Position(s) | DescriptionActions | Graphical view | Length |
|---|---|---|---|---|
| Sitei | 708 – 709 | Cleavage; by caspase-3By similarity | 2 | |
| Sitei | 1018 – 1019 | Cleavage; by caspase-3By similarity | 2 |
Keywords - PTMi
Disulfide bond, Glycoprotein, PhosphoproteinProteomic databases
| EPDi | P35546. |
| MaxQBi | P35546. |
| PaxDbi | P35546. |
| PRIDEi | P35546. |
PTM databases
| iPTMneti | P35546. |
| PhosphoSitePlusi | P35546. |
Expressioni
Tissue specificityi
Expressed in peripheral nerve cells, hematopoietic cells and podocytes.1 Publication
Gene expression databases
| Bgeei | ENSMUSG00000030110. |
| CleanExi | MM_RET. |
| Genevisiblei | P35546. MM. |
Interactioni
Subunit structurei
Phosphorylated form interacts with the PBT domain of DOK2, DOK4 and DOK5. The phosphorylated form interacts with PLCG1 and GRB7. Interacts (not phosphorylated) with PTK2/FAK1 (via FERM domain). Extracellular cell-membrane anchored RET cadherin fragments form complex in neurons with reduced trophic status, preferentially at the contact sites between somas. Interacts with AIP in the pituitary gland; this interaction prevents the formation of the AIP-survivin complex. Binds to ARTN. Interacts (inactive) with CBLC and CD2AP; dissociates upon activation by GDNF which increases CBLC:CD2AP interaction.4 Publications
Binary interactionsi
| With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| Epha5 | Q60629 | 5 | EBI-5548911,EBI-1267609 |
Protein-protein interaction databases
| BioGridi | 202865. 2 interactors. |
| IntActi | P35546. 10 interactors. |
| MINTi | MINT-5313433. |
| STRINGi | 10090.ENSMUSP00000032201. |
Chemistry databases
| BindingDBi | P35546. |
Structurei
Secondary structure
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details| Feature key | Position(s) | DescriptionActions | Graphical view | Length |
|---|---|---|---|---|
| Beta strandi | 1057 – 1059 | Combined sources | 3 | |
| Turni | 1061 – 1064 | Combined sources | 4 |
3D structure databases
| Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
| 1UEF | X-ray | 2.50 | C/D | 1055-1067 | [»] | |
| ProteinModelPortali | P35546. | |||||
| SMRi | P35546. | |||||
| ModBasei | Search... | |||||
| MobiDBi | Search... | |||||
Miscellaneous databases
| EvolutionaryTracei | P35546. |
Family & Domainsi
Domains and Repeats
| Feature key | Position(s) | DescriptionActions | Graphical view | Length |
|---|---|---|---|---|
| Domaini | 168 – 273 | CadherinPROSITE-ProRule annotationAdd BLAST | 106 | |
| Domaini | 725 – 1017 | Protein kinasePROSITE-ProRule annotationAdd BLAST | 293 |
Region
| Feature key | Position(s) | DescriptionActions | Graphical view | Length |
|---|---|---|---|---|
| Regioni | 806 – 808 | Inhibitors bindingBy similarity | 3 |
Sequence similaritiesi
Keywords - Domaini
Signal, Transmembrane, Transmembrane helixPhylogenomic databases
| eggNOGi | KOG0200. Eukaryota. COG0515. LUCA. |
| GeneTreei | ENSGT00760000118923. |
| HOGENOMi | HOG000010301. |
| HOVERGENi | HBG002609. |
| InParanoidi | P35546. |
| KOi | K05126. |
| OMAi | DSMENQV. |
| OrthoDBi | EOG091G0CQZ. |
| PhylomeDBi | P35546. |
| TreeFami | TF317640. |
Family and domain databases
| InterProi | View protein in InterPro IPR002126. Cadherin. IPR015919. Cadherin-like. IPR011009. Kinase-like_dom. IPR000719. Prot_kinase_dom. IPR017441. Protein_kinase_ATP_BS. IPR001245. Ser-Thr/Tyr_kinase_cat_dom. IPR008266. Tyr_kinase_AS. IPR020635. Tyr_kinase_cat_dom. IPR016249. Tyr_kinase_Ret_rcpt. |
| Pfami | View protein in Pfam PF00028. Cadherin. 1 hit. PF07714. Pkinase_Tyr. 1 hit. |
| PIRSFi | PIRSF000631. TyrPK_receptor_Ret. 1 hit. |
| PRINTSi | PR00109. TYRKINASE. |
| SMARTi | View protein in SMART SM00219. TyrKc. 1 hit. |
| SUPFAMi | SSF49313. SSF49313. 1 hit. SSF56112. SSF56112. 1 hit. |
| PROSITEi | View protein in PROSITE PS50268. CADHERIN_2. 1 hit. PS00107. PROTEIN_KINASE_ATP. 1 hit. PS50011. PROTEIN_KINASE_DOM. 1 hit. PS00109. PROTEIN_KINASE_TYR. 1 hit. |
Sequences (2)i
Sequence statusi: Complete.
Sequence processingi: The displayed sequence is further processed into a mature form.
This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket
Isoform 1 (identifier: P35546-1) [UniParc]FASTAAdd to basket
Also known as: Ret51
This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
10 20 30 40 50
MAKATSGAAG LGLKLILLLP LLGEAPLGLY FSRDAYWERL YVDQPAGTPL
60 70 80 90 100
LYVHALRDAP GEVPSFRLGQ HLYGVYRTRL HENDWIRINE TTGLLYLNQS
110 120 130 140 150
LDHSSWEQLS IRNGGFPLLT IFLQVFLGST AQREGECHWP GCTRVYFSFI
160 170 180 190 200
NDTFPNCSSF KAQDLCIPET AVSFRVRENR PPGTFYHFHM LPVQFLCPNI
210 220 230 240 250
SVKYSLLGGD SLPFRCDPDC LEVSTRWALD RELREKYVLE ALCIVAGPGA
260 270 280 290 300
NKETVTLSFP VTVYDEDDSA PTFSGGVGTA SAVVEFKRKE GTVVATLQVF
310 320 330 340 350
DADVVPASGE LVRRYTNTLL SGDSWAQQTF RVEHSPIETL VQVNNNSVRA
360 370 380 390 400
TMHNYKLILN RSLSISESRV LQLAVLVNDS DFQGPGAGGI LVLHFNVSVL
410 420 430 440 450
PVTLNLPRAY SFPVNKRARR YAQIGKVCVE NCQEFSGVSI QYKLQPSSIN
460 470 480 490 500
CTALGVVTSP EDTSGTLFVN DTEALRRPEC TKLQYTVVAT DRQTRRQTQA
510 520 530 540 550
SLVVTVEGTS ITEEVGCPKS CAVNKRRPEC EECGGLGSPT GRCEWRQGDG
560 570 580 590 600
KGITRNFSTC SPSTRTCPDG HCDAVESRDA NICPQDCLRA DIVGGHERGE
610 620 630 640 650
RQGIKAGYGI CNCFPDEKKC FCEPEDSQGP LCDALCRTII TAALFSLIIS
660 670 680 690 700
ILLSIFCVCH HHKHGHKPPI ASAEMTFCRP AQGFPISYSS SGTRRPSLDS
710 720 730 740 750
TENQVPVDSF KIPEDPKWEF PRKNLVLGKT LGEGEFGKVV KATAFRLKGR
760 770 780 790 800
AGYTTVAVKM LKENASQSEL RDLLSEFNLL KQVNHPHVIK LYGACSQDGP
810 820 830 840 850
LLLIVEYAKY GSLRGFLRDS RKIGPAYVSG GGSRNSSSLD HPDERVLTMG
860 870 880 890 900
DLISFAWQIS RGMQYLAEMK LVHRDLAARN ILVAEGRKMK ISDFGLSRDV
910 920 930 940 950
YEEDSYVKKS KGRIPVKWMA IESLFDHIYT TQSDVWSFGV LLWEIVTLGG
960 970 980 990 1000
NPYPGIPPER LFNLLKTGHR MERPDNCSEE MYRLMLQCWK QEPDKRPVFA
1010 1020 1030 1040 1050
DISKDLEKMM VKSRDYLDLA ASTPSDSLLY DDGLSEEETP LVDCNNAPLP
1060 1070 1080 1090 1100
RSLPSTWIEN KLYGMSDPNW PGESPVPLTR ADGTSTGFPR YANDSVYANW
1110
MVSPSAAKLM DTFDS
Experimental Info
| Feature key | Position(s) | DescriptionActions | Graphical view | Length |
|---|---|---|---|---|
| Sequence conflicti | 174 | F → S in CAA48013 (PubMed:8455936).Curated | 1 |
Alternative sequence
| Feature key | Position(s) | DescriptionActions | Graphical view | Length |
|---|---|---|---|---|
| Alternative sequenceiVSP_011304 | 1065 – 1115 | MSDPN…DTFDS → RISHAFTRF in isoform 2. 3 PublicationsAdd BLAST | 51 |
Sequence databases
| Select the link destinations: EMBLi GenBanki DDBJi Links Updated | X67812 mRNA. Translation: CAA48013.1. AF209436 mRNA. Translation: AAF21033.1. AY326397 mRNA. Translation: AAP88379.1. AK051633 mRNA. Translation: BAC34699.1. BC059012 mRNA. Translation: AAH59012.1. |
| CCDSi | CCDS20470.1. [P35546-1] CCDS39608.1. [P35546-2] |
| PIRi | I48735. S29926. |
| RefSeqi | NP_001074249.1. NM_001080780.1. [P35546-2] NP_033076.2. NM_009050.2. [P35546-1] |
| UniGenei | Mm.57199. |
Genome annotation databases
| Ensembli | ENSMUST00000032201; ENSMUSP00000032201; ENSMUSG00000030110. [P35546-1] ENSMUST00000088790; ENSMUSP00000086169; ENSMUSG00000030110. [P35546-2] |
| GeneIDi | 19713. |
| KEGGi | mmu:19713. |
| UCSCi | uc009dlm.1. mouse. [P35546-1] uc009dln.1. mouse. [P35546-2] |
Keywords - Coding sequence diversityi
Alternative splicingSimilar proteinsi
Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:| 100% | UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry. |
| 90% | UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence). |
| 50% | UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster. |
Entry informationi
| Entry namei | RET_MOUSE | |
| Accessioni | P35546Primary (citable) accession number: P35546 Secondary accession number(s): Q8BQ34, Q9QXH9 | |
| Entry historyi | Integrated into UniProtKB/Swiss-Prot: | June 1, 1994 |
| Last sequence update: | August 16, 2004 | |
| Last modified: | July 5, 2017 | |
| This is version 167 of the entry and version 2 of the sequence. See complete history. | ||
| Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
| Annotation program | Chordata Protein Annotation Program | |
Miscellaneousi
Keywords - Technical termi
3D-structure, Complete proteome, Reference proteomeDocuments
- MGD cross-references
Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot - PDB cross-references
Index of Protein Data Bank (PDB) cross-references - Human and mouse protein kinases
Human and mouse protein kinases: classification and index - SIMILARITY comments
Index of protein domains and families
