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Protein

Regulatory protein NocR

Gene

nocR

Organism
Agrobacterium tumefaciens (strain T37)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi19 – 38H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionActivator, DNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Regulatory protein NocR
Gene namesi
Name:nocR
Encoded oniPlasmid pTiT370 Publication
OrganismiAgrobacterium tumefaciens (strain T37)
Taxonomic identifieri176300 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacteriumAgrobacterium tumefaciens complex

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001056951 – 300Regulatory protein NocRAdd BLAST300

Structurei

3D structure databases

ProteinModelPortaliP35112.
SMRiP35112.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 59HTH lysR-typePROSITE-ProRule annotationAdd BLAST59

Family and domain databases

CDDicd08415. PBP2_LysR_opines_like. 1 hit.
Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR005119. LysR_subst-bd.
IPR037424. NocR_PBP2.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR036388. WH-like_DNA-bd_sf.
IPR036390. WH_DNA-bd_sf.
PfamiView protein in Pfam
PF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS50931. HTH_LYSR. 1 hit.

Sequencei

Sequence statusi: Complete.

P35112-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIQSRQLEAF RPVMLTGGMT SAANLVRITQ PAISRLIRDL EEEIGISLFE
60 70 80 90 100
RTGNRLRPTR EAGILFKEVS RHFNGIQHID KVAAELKKSH MGSLRVACYT
110 120 130 140 150
APALSFMSGV IQTFIADRPD VSVYLDTVPS QTVLELVSLQ HYDLGISILA
160 170 180 190 200
GDYPGLTTEP VPSFRAVCLL PPGHRLEDKE TVHATDLEGE SLICLSPVSL
210 220 230 240 250
LRMQTDAALD SCGVHCNRRI ESSLALNLCD LVSRGMGVGI VDPFTADYYS
260 270 280 290 300
ANPVIQRSFD PVVPYHFAIV LPTDSPPPRL VSEFRAALLD ALKALPYETI
Length:300
Mass (Da):32,942
Last modified:February 1, 1994 - v1
Checksum:iFE6FF09DBFD0AEAA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L04475 Unassigned DNA. Translation: AAC36842.1.
PIRiS28671.

Similar proteinsi

Entry informationi

Entry nameiNOCR_AGRT7
AccessioniPrimary (citable) accession number: P35112
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1994
Last sequence update: February 1, 1994
Last modified: January 31, 2018
This is version 73 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Plasmid