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Protein

10 kDa chaperonin

Gene

CPN10

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Seems to function only as a co-chaperone, along with cpn60, and in certain cases is essential for the discharge of biologically active proteins from cpn60.

GO - Molecular functioni

  • ATP binding Source: InterPro
  • copper ion binding Source: TAIR

GO - Biological processi

  • protein folding Source: InterPro
  • response to heat Source: TAIR
Complete GO annotation...

Keywords - Molecular functioni

Chaperone

Names & Taxonomyi

Protein namesi
Recommended name:
10 kDa chaperonin
Alternative name(s):
Chaperonin 10
Short name:
CPN10
Protein groES
Gene namesi
Name:CPN10
Ordered Locus Names:At1g14980
ORF Names:T15D22.2
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G14980.

Subcellular locationi

GO - Cellular componenti

  • mitochondrion Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 989810 kDa chaperoninPRO_0000174923Add
BLAST

Proteomic databases

PaxDbiP34893.
PRIDEiP34893.

PTM databases

iPTMnetiP34893.

Expressioni

Gene expression databases

GenevisibleiP34893. AT.

Interactioni

Subunit structurei

Forms stable complexes with CPN60 in the presence of ATP.

Protein-protein interaction databases

BioGridi23303. 1 interaction.
MINTiMINT-8058965.
STRINGi3702.AT1G14980.1.

Structurei

3D structure databases

ProteinModelPortaliP34893.
SMRiP34893. Positions 3-93.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the GroES chaperonin family.Curated

Phylogenomic databases

eggNOGiKOG1641. Eukaryota.
COG0234. LUCA.
HOGENOMiHOG000133897.
InParanoidiP34893.
KOiK04078.
OMAiEEYYLFR.
PhylomeDBiP34893.

Family and domain databases

Gene3Di2.30.33.40. 1 hit.
InterProiIPR020818. Chaperonin_GroES.
IPR018369. Chaprnonin_Cpn10_CS.
IPR011032. GroES-like.
[Graphical view]
PANTHERiPTHR10772. PTHR10772. 1 hit.
PfamiPF00166. Cpn10. 1 hit.
[Graphical view]
PRINTSiPR00297. CHAPERONIN10.
SMARTiSM00883. Cpn10. 1 hit.
[Graphical view]
SUPFAMiSSF50129. SSF50129. 1 hit.
PROSITEiPS00681. CHAPERONINS_CPN10. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P34893-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMKRLIPTFN RILVQRVIQP AKTESGILLP EKSSKLNSGK VIAVGPGSRD
60 70 80 90
KDGKLIPVSV KEGDTVLLPE YGGTQVKLGE NEYHLFRDED VLGTLHED
Length:98
Mass (Da):10,812
Last modified:February 1, 1994 - v1
Checksum:iC405C7C342A99F27
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L02843 mRNA. Translation: AAA32767.1.
D88314 mRNA. Translation: BAA13588.2.
AC012189 Genomic DNA. Translation: AAF31020.1.
CP002684 Genomic DNA. Translation: AEE29249.1.
AY063928 mRNA. Translation: AAL36284.1.
AY091252 mRNA. Translation: AAM14191.1.
AY086708 mRNA. Translation: AAM63762.1.
PIRiS65597.
RefSeqiNP_563961.1. NM_101367.2.
UniGeneiAt.295.

Genome annotation databases

EnsemblPlantsiAT1G14980.1; AT1G14980.1; AT1G14980.
GeneIDi838063.
GrameneiAT1G14980.1; AT1G14980.1; AT1G14980.
KEGGiath:AT1G14980.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L02843 mRNA. Translation: AAA32767.1.
D88314 mRNA. Translation: BAA13588.2.
AC012189 Genomic DNA. Translation: AAF31020.1.
CP002684 Genomic DNA. Translation: AEE29249.1.
AY063928 mRNA. Translation: AAL36284.1.
AY091252 mRNA. Translation: AAM14191.1.
AY086708 mRNA. Translation: AAM63762.1.
PIRiS65597.
RefSeqiNP_563961.1. NM_101367.2.
UniGeneiAt.295.

3D structure databases

ProteinModelPortaliP34893.
SMRiP34893. Positions 3-93.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi23303. 1 interaction.
MINTiMINT-8058965.
STRINGi3702.AT1G14980.1.

PTM databases

iPTMnetiP34893.

Proteomic databases

PaxDbiP34893.
PRIDEiP34893.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G14980.1; AT1G14980.1; AT1G14980.
GeneIDi838063.
GrameneiAT1G14980.1; AT1G14980.1; AT1G14980.
KEGGiath:AT1G14980.

Organism-specific databases

TAIRiAT1G14980.

Phylogenomic databases

eggNOGiKOG1641. Eukaryota.
COG0234. LUCA.
HOGENOMiHOG000133897.
InParanoidiP34893.
KOiK04078.
OMAiEEYYLFR.
PhylomeDBiP34893.

Miscellaneous databases

PROiP34893.

Gene expression databases

GenevisibleiP34893. AT.

Family and domain databases

Gene3Di2.30.33.40. 1 hit.
InterProiIPR020818. Chaperonin_GroES.
IPR018369. Chaprnonin_Cpn10_CS.
IPR011032. GroES-like.
[Graphical view]
PANTHERiPTHR10772. PTHR10772. 1 hit.
PfamiPF00166. Cpn10. 1 hit.
[Graphical view]
PRINTSiPR00297. CHAPERONIN10.
SMARTiSM00883. Cpn10. 1 hit.
[Graphical view]
SUPFAMiSSF50129. SSF50129. 1 hit.
PROSITEiPS00681. CHAPERONINS_CPN10. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "cDNA encoding a putative 10-kilodalton chaperonin from Arabidopsis thaliana."
    Grellet F., Raynal M., Laudie M., Cooke R., Giraudat J., Delseny M.
    Plant Physiol. 102:685-685(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. Columbia.
  2. "Isolation and characterization of a cDNA encoding mitochondrial chaperonin 10 from Arabidopsis thaliana by functional complementation of an Escherichia coli groES mutant."
    Koumoto Y., Tsugeki R., Shimada T., Mori H., Kondo M., Hara-Nishimura I., Nishimura M.
    Plant J. 10:1119-1125(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. Landsberg erecta.
    Tissue: Seedling.
  3. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  4. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  5. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  6. "Full-length cDNA from Arabidopsis thaliana."
    Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
    Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].

Entry informationi

Entry nameiCH10_ARATH
AccessioniPrimary (citable) accession number: P34893
Secondary accession number(s): Q96249
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1994
Last sequence update: February 1, 1994
Last modified: February 17, 2016
This is version 117 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.