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P34504 (YMV2_CAEEL) Reviewed, UniProtKB/Swiss-Prot

Last modified March 19, 2014. Version 115. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized protein K04H4.2
Gene names
ORF Names:K04H4.2
OrganismCaenorhabditis elegans [Reference proteome]
Taxonomic identifier6239 [NCBI]
Taxonomic lineageEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis

Protein attributes

Sequence length1463 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 1 chitin-binding type-2 domain.

Ontologies

Keywords
   Coding sequence diversityAlternative splicing
   DomainSignal
   LigandChitin-binding
   PTMDisulfide bond
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processchitin metabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular_componentextracellular region

Inferred from electronic annotation. Source: InterPro

   Molecular_functionchitin binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Alternative products

This entry describes 3 isoforms produced by alternative splicing. [Align] [Select]
Isoform c (identifier: P34504-3)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Note: No experimental confirmation available.
Isoform b (identifier: P34504-1)

The sequence of this isoform differs from the canonical sequence as follows:
     165-165: P → R
     166-679: Missing.
     721-721: D → V
     722-882: Missing.
Note: No experimental confirmation available.
Isoform a (identifier: P34504-2)

The sequence of this isoform differs from the canonical sequence as follows:
     165-165: P → R
     166-679: Missing.
     721-721: D → V
     722-882: Missing.
     1281-1440: Missing.
Note: No experimental confirmation available.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 1717 Potential
Chain18 – 14631446Uncharacterized protein K04H4.2
PRO_0000014291

Regions

Domain94 – 16471Chitin-binding type-2
Compositional bias177 – 26286Cys-rich
Compositional bias353 – 41159Cys-rich
Compositional bias879 – 1162284Cys-rich

Amino acid modifications

Disulfide bond141 ↔ 154 By similarity

Natural variations

Alternative sequence1651P → R in isoform a and isoform b.
VSP_012169
Alternative sequence166 – 679514Missing in isoform a and isoform b.
VSP_012168
Alternative sequence7211D → V in isoform a and isoform b.
VSP_026510
Alternative sequence722 – 882161Missing in isoform a and isoform b.
VSP_026511
Alternative sequence1281 – 1440160Missing in isoform a.
VSP_002449

Sequences

Sequence LengthMass (Da)Tools
Isoform c [UniParc].

Last modified September 18, 2013. Version 8.
Checksum: 00A97AEFD99B3A7B

FASTA1,463153,114
        10         20         30         40         50         60 
MLRNLILITL LVASGHGQTP VIGGTCKLGT ADVQIGGKQT QFFLKCETTA DSAEGEGVWV 

        70         80         90        100        110        120 
VKSRAAAAPS SVPSVPAENT QPQQHPKARK PASPNICEQD NGARESEVCA VSATCLQAHN 

       130        140        150        160        170        180 
DFPSSYLQCD QTTLRWVRKS CQENFLFNFE QQTCIVPKRM SSLSPSTSSP SNTENPCSKC 

       190        200        210        220        230        240 
PLGSACRNGN CIPLTTSNLC SDGSPPNNTC TRDPYSCPKG HFCTAQKVCC PSTALQSSIG 

       250        260        270        280        290        300 
CSTVCTIDES CPKGMTCQNN CCEERKLLRH PKVYRYATVE ATNTIFEVDN DIFDSAAIES 

       310        320        330        340        350        360 
LPTQKPQRLD EIMAPGITPT PTRTTEPPKL RCLSSNTDEV NSLGGASSSS ATCGGTNANC 

       370        380        390        400        410        420 
TSDEDCPTTF KCYQGCCKLA VCPRSLTAVK FTCKTQYHCR ANEHCFFGGC CPKTIELAVI 

       430        440        450        460        470        480 
KSQVLTMSKD NEHTKETEKL IIGDCEVDTR VKKCDIDIIC PEMSECVDGI CCKQPPKARC 

       490        500        510        520        530        540 
GNGLMALSIP VHCSLSDDCP IASRCEYGKC CPFLSESADS TSDSVGETTP VIIKEEIIST 

       550        560        570        580        590        600 
ATKVWKKVDK TSGVSINKNK CLSTQRCDLH TLCPPDFTCS LSGKCCKLNI HCPDGTVPET 

       610        620        630        640        650        660 
SCQSASNHDH CPSSSHKCTL LNKEHFACCY SPGLVVEGSV TAEVSSECPI GSVEVDPRFG 

       670        680        690        700        710        720 
TSCRYSLQCP SPYFCNQRGQ QASGLVCTFS SCSNSNPCSV GTCNNGYCCS SGSNSGSAII 

       730        740        750        760        770        780 
DSDTNSTTNP SQPETTKTKN NTKKSNSSKK HRKPKKKDVD PLSDPLLQND FPIGPPGYGF 

       790        800        810        820        830        840 
PEHLSNLDEV LIRAQGDGVS CAGGFQSSLI CSVGSECPAG LHCDTAINLC CPLLLPLTDP 

       850        860        870        880        890        900 
KNPKKRKTKR RKQKQDENEM EASANFPDSD PARFSSYSCG CMGGGSSNCV GCQNAPQIIT 

       910        920        930        940        950        960 
IPQNSCPGGG YSVGGCSSGY CATGYSCIQN QCCPSYNSAP RISVYTCPSG GNAVGACMSG 

       970        980        990       1000       1010       1020 
RCASGYTCSN NVCCPQTTTT NPFVCPDGTQ AAGGCVNGQC GTGYTCSNGL CCAGTSTTVK 

      1030       1040       1050       1060       1070       1080 
CLDGSDAVGA CIPSCTGDGC GGVQVSYYCG SGYTCTTGNI CCPINSCPNG GEVLGPTING 

      1090       1100       1110       1120       1130       1140 
LCPTGYTVQG NLCCSATCTD GSTGLPSVNG VCIDGYSLTN GVCCPASVTC TDEISIGPCT 

      1150       1160       1170       1180       1190       1200 
GTGFNGGCPA GYACDSNQVN CCPVVRYTDE SCQVGPAIDG LCPPGYVVVY IPNSPLITNG 

      1210       1220       1230       1240       1250       1260 
VNPGTCIDLQ CTTGLCLTAN QIGDCDTATD AGTCPTGYTC FTNAGICCST TTFSRLRIGN 

      1270       1280       1290       1300       1310       1320 
SRQMAQKPNY GRPLHSYMPP RFGGPSSSCS DGSLSSGPCM NGLCGIGLEC QNGKCCSPSS 

      1330       1340       1350       1360       1370       1380 
NKPAGLLQSK CPSGDTAVSG CFPNGSCGTG YECVSSLNLC CPPGQPQTFP SFPGNNNGFN 

      1390       1400       1410       1420       1430       1440 
INNNNRFGSL SMSPRPIGAR CQLDGECVGQ AEGLSMCHAG VCQCSPIAYT QGIACVRRKS 

      1450       1460 
FQMNDDPVID AANDDKSSSS VSV 

« Hide

Isoform b [UniParc].

Checksum: C0D85035108B37C1
Show »

FASTA78880,380
Isoform a [UniParc].

Checksum: 15A4A67BF8383E9B
Show »

FASTA62864,137

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
Z27078 Genomic DNA. Translation: CAA81587.2.
Z27078 Genomic DNA. Translation: CAA81588.3.
Z27078 Genomic DNA. Translation: CAH04706.4.
PIRB88553.
S40992.
S40994.
RefSeqNP_001022664.4. NM_001027493.5.
NP_499058.3. NM_066657.5.
NP_499059.2. NM_066658.4.
UniGeneCel.24437.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

BioGrid41513. 5 interactions.
IntActP34504. 11 interactions.
MINTMINT-116825.

Proteomic databases

PaxDbP34504.
PRIDEP34504.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID176315.
KEGGcel:CELE_K04H4.2.
UCSCK04H4.2a.2. c. elegans. [P34504-1]

Organism-specific databases

CTD176315.
WormBaseK04H4.2a; CE32463; WBGene00010573.
K04H4.2b; CE36653; WBGene00010573.
K04H4.2c; CE47897; WBGene00010573.

Phylogenomic databases

eggNOGNOG12793.
HOGENOMHOG000019167.
InParanoidP34504.
OMACTIDESC.

Family and domain databases

InterProIPR007026. CC_domain.
IPR002557. Chitin-bd_dom.
IPR006150. Cys_repeat_1.
[Graphical view]
PfamPF04942. CC. 3 hits.
[Graphical view]
SMARTSM00494. ChtBD2. 1 hit.
SM00289. WR1. 19 hits.
[Graphical view]
SUPFAMSSF57625. SSF57625. 1 hit.
ProtoNetSearch...

Other

NextBio892054.

Entry information

Entry nameYMV2_CAEEL
AccessionPrimary (citable) accession number: P34504
Secondary accession number(s): P34505 expand/collapse secondary AC list , P34506, P90907, Q6BEV9
Entry history
Integrated into UniProtKB/Swiss-Prot: February 1, 1994
Last sequence update: September 18, 2013
Last modified: March 19, 2014
This is version 115 of the entry and version 8 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Relevant documents

SIMILARITY comments

Index of protein domains and families

Caenorhabditis elegans

Caenorhabditis elegans: entries, gene names and cross-references to WormBase