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Protein

60S ribosomal protein L21

Gene

rpl-21

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L21
Gene namesi
Name:rpl-21
ORF Names:C14B9.7
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome III

Organism-specific databases

WormBaseiC14B9.7; CE00078; WBGene00004433; rpl-21.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00001496742 – 16160S ribosomal protein L21Add BLAST160

Proteomic databases

EPDiP34334.
PaxDbiP34334.
PeptideAtlasiP34334.
PRIDEiP34334.

Expressioni

Gene expression databases

BgeeiWBGene00004433.

Interactioni

Protein-protein interaction databases

BioGridi41352. 3 interactors.
DIPiDIP-24597N.
IntActiP34334. 2 interactors.
MINTiMINT-1072893.
STRINGi6239.C14B9.7.1.

Structurei

3D structure databases

ProteinModelPortaliP34334.
SMRiP34334.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1732. Eukaryota.
COG2139. LUCA.
GeneTreeiENSGT00390000001293.
HOGENOMiHOG000194513.
InParanoidiP34334.
KOiK02889.
OMAiHVKHSKS.
OrthoDBiEOG091G0SNM.
PhylomeDBiP34334.

Family and domain databases

Gene3Di2.30.30.70. 1 hit.
InterProiView protein in InterPro
IPR001147. Ribosomal_L21e.
IPR018259. Ribosomal_L21e_CS.
IPR008991. Translation_prot_SH3-like.
PANTHERiPTHR20981. PTHR20981. 1 hit.
PfamiView protein in Pfam
PF01157. Ribosomal_L21e. 1 hit.
SUPFAMiSSF50104. SSF50104. 1 hit.
PROSITEiView protein in PROSITE
PS01171. RIBOSOMAL_L21E. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P34334-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTNSKGLRRG TRYMFARDFR KHGVEHLSTY YTQYKRGDLV DIKTNGAFQK
60 70 80 90 100
GMPFKAYHGR TGRIFNVTRG AVGIIVNKRV RGNILPKRIN IRIEHIKPSK
110 120 130 140 150
CRTDFLNRVK SNDEKRKAAK SAGQPVPALK RLPVAPRGAH TVTTQNNEPE
160
LLAPLRFEIV A
Length:161
Mass (Da):18,310
Last modified:January 23, 2007 - v3
Checksum:i4F02C03F13F0D895
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080531 Genomic DNA. Translation: CCD64440.1.
PIRiS44757.
RefSeqiNP_498774.1. NM_066373.5.
UniGeneiCel.7460.

Genome annotation databases

EnsemblMetazoaiC14B9.7.1; C14B9.7.1; WBGene00004433.
C14B9.7.2; C14B9.7.2; WBGene00004433.
GeneIDi176146.
KEGGicel:CELE_C14B9.7.
UCSCiC14B9.7.2. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080531 Genomic DNA. Translation: CCD64440.1.
PIRiS44757.
RefSeqiNP_498774.1. NM_066373.5.
UniGeneiCel.7460.

3D structure databases

ProteinModelPortaliP34334.
SMRiP34334.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi41352. 3 interactors.
DIPiDIP-24597N.
IntActiP34334. 2 interactors.
MINTiMINT-1072893.
STRINGi6239.C14B9.7.1.

Proteomic databases

EPDiP34334.
PaxDbiP34334.
PeptideAtlasiP34334.
PRIDEiP34334.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC14B9.7.1; C14B9.7.1; WBGene00004433.
C14B9.7.2; C14B9.7.2; WBGene00004433.
GeneIDi176146.
KEGGicel:CELE_C14B9.7.
UCSCiC14B9.7.2. c. elegans.

Organism-specific databases

CTDi176146.
WormBaseiC14B9.7; CE00078; WBGene00004433; rpl-21.

Phylogenomic databases

eggNOGiKOG1732. Eukaryota.
COG2139. LUCA.
GeneTreeiENSGT00390000001293.
HOGENOMiHOG000194513.
InParanoidiP34334.
KOiK02889.
OMAiHVKHSKS.
OrthoDBiEOG091G0SNM.
PhylomeDBiP34334.

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiPR:P34334.

Gene expression databases

BgeeiWBGene00004433.

Family and domain databases

Gene3Di2.30.30.70. 1 hit.
InterProiView protein in InterPro
IPR001147. Ribosomal_L21e.
IPR018259. Ribosomal_L21e_CS.
IPR008991. Translation_prot_SH3-like.
PANTHERiPTHR20981. PTHR20981. 1 hit.
PfamiView protein in Pfam
PF01157. Ribosomal_L21e. 1 hit.
SUPFAMiSSF50104. SSF50104. 1 hit.
PROSITEiView protein in PROSITE
PS01171. RIBOSOMAL_L21E. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRL21_CAEEL
AccessioniPrimary (citable) accession number: P34334
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1994
Last sequence update: January 23, 2007
Last modified: June 7, 2017
This is version 119 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.