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Protein

Uncharacterized F-box/LRR-repeat protein C02F5.7

Gene

C02F5.7

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

GO - Biological processi

Keywordsi

Biological processUbl conjugation pathway

Enzyme and pathway databases

ReactomeiR-CEL-8951664 Neddylation
R-CEL-983168 Antigen processing: Ubiquitination & Proteasome degradation

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized F-box/LRR-repeat protein C02F5.7
Gene namesi
ORF Names:C02F5.7
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome III

Organism-specific databases

WormBaseiC02F5.7a ; CE24780 ; WBGene00015350
C02F5.7b ; CE30418 ; WBGene00015350

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001199811 – 466Uncharacterized F-box/LRR-repeat protein C02F5.7Add BLAST466

Proteomic databases

PaxDbiP34284
PeptideAtlasiP34284
PRIDEiP34284

Expressioni

Gene expression databases

BgeeiWBGene00015350

Interactioni

Protein-protein interaction databases

IntActiP34284, 2 interactors
MINTiP34284
STRINGi6239.C02F5.7b.1

Structurei

3D structure databases

ProteinModelPortaliP34284
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini54 – 100F-boxPROSITE-ProRule annotationAdd BLAST47
Repeati122 – 147LRR 1Add BLAST26
Repeati148 – 173LRR 2Add BLAST26
Repeati174 – 199LRR 3Add BLAST26
Repeati200 – 225LRR 4Add BLAST26
Repeati226 – 251LRR 5Add BLAST26
Repeati252 – 277LRR 6Add BLAST26
Repeati278 – 303LRR 7Add BLAST26
Repeati304 – 329LRR 8Add BLAST26
Repeati330 – 355LRR 9Add BLAST26
Repeati356 – 381LRR 10Add BLAST26
Repeati408 – 433LRR 11Add BLAST26

Keywords - Domaini

Leucine-rich repeat, Repeat

Phylogenomic databases

eggNOGiKOG4341 Eukaryota
ENOG410XQ54 LUCA
GeneTreeiENSGT00760000119059
HOGENOMiHOG000230659
InParanoidiP34284
KOiK10268
OMAiDLYDCQN
OrthoDBiEOG091G060Y
PhylomeDBiP34284

Family and domain databases

Gene3Di3.80.10.10, 3 hits
InterProiView protein in InterPro
IPR001810 F-box_dom
IPR001611 Leu-rich_rpt
IPR006553 Leu-rich_rpt_Cys-con_subtyp
IPR032675 LRR_dom_sf
PfamiView protein in Pfam
PF12937 F-box-like, 1 hit
PF13516 LRR_6, 3 hits
SMARTiView protein in SMART
SM00256 FBOX, 1 hit
SM00367 LRR_CC, 11 hits
PROSITEiView protein in PROSITE
PS50181 FBOX, 1 hit

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform b (identifier: P34284-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
METAERISAA ASAASSRRAK RLAQQAHKTH PVIQAKQNQM YLITTLSPAQ
60 70 80 90 100
VDNSLINRVL PKEVLLKVFS FLDTKALCRS AQVCRSWSIL ALDGSNWQRV
110 120 130 140 150
DLFTFQRDVK TAVVENLARR CGGFLKELSL KGCENVHDSA LRTFTSRCPN
160 170 180 190 200
LEHLSLYRCK RVTDASCENL GRYCHKLNYL NLENCSSITD RAMKYIGDGC
210 220 230 240 250
PNLSYLNISW CDAIQDRGVQ IILSNCKSLD TLILRGCEGL TENVFGSVEA
260 270 280 290 300
HMGAIKKLNL LQCFQLTDIT VQNIANGATA LEYLCMSNCN QISDRSLVSL
310 320 330 340 350
GQHSHNLKVL ELSGCTLLGD NGFIPLARGC RQLERLDMED CSLISDHTIN
360 370 380 390 400
SLANNCTALR ELSLSHCELI TDESIQNLAS KHRETLNVLE LDNCPQLTDS
410 420 430 440 450
TLSHLRHCKA LKRIDLYDCQ NVSKEAIVRF QHHRPNIEIH AYFAPVTPPT
460
DQVVNRGGIC RCCVIL
Note: No experimental confirmation available.
Length:466
Mass (Da):52,065
Last modified:October 25, 2005 - v3
Checksum:i05BCE82AA606E15F
GO
Isoform a (identifier: P34284-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     459-466: ICRCCVIL → MLF

Note: No experimental confirmation available.
Show »
Length:461
Mass (Da):51,552
Checksum:iBB28C98A5CA7B1D5
GO

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_015950459 – 466ICRCCVIL → MLF in isoform a. Curated8

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080288 Genomic DNA Translation: CCD62632.1
FO080288 Genomic DNA Translation: CCD62633.1
PIRiG88523
S44609
RefSeqiNP_741248.1, NM_171210.4 [P34284-1]
NP_741249.1, NM_171211.3 [P34284-2]
UniGeneiCel.35665

Genome annotation databases

EnsemblMetazoaiC02F5.7b.1; C02F5.7b.1; WBGene00015350 [P34284-1]
C02F5.7b.2; C02F5.7b.2; WBGene00015350 [P34284-1]
C02F5.7b.3; C02F5.7b.3; WBGene00015350 [P34284-1]
GeneIDi3564805
KEGGicel:CELE_C02F5.7
UCSCiC02F5.7a.1 c. elegans [P34284-1]

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Entry informationi

Entry nameiYKK7_CAEEL
AccessioniPrimary (citable) accession number: P34284
Secondary accession number(s): Q8T3G0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1994
Last sequence update: October 25, 2005
Last modified: March 28, 2018
This is version 135 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase

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