Reviewed,
UniProtKB/Swiss-Prot P34216 (EDE1_YEAST)
Last modified
December 15, 2009.
Version 86.
History...
Clusters with 100%,
90%,
50% identity |
Documents (4) |
Third-party data |
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Names and origin
| Protein names | Recommended name: EH domain-containing and endocytosis protein 1 Alternative name(s): Bud site selection protein 15 | ||||||||
| Gene names |
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| Organism | Saccharomyces cerevisiae (Baker's yeast) [Complete proteome] | ||||||||
| Taxonomic identifier | 4932 [NCBI] | ||||||||
| Taxonomic lineage | Eukaryota › Fungi › Dikarya › Ascomycota › Saccharomycotina › Saccharomycetes › Saccharomycetales › Saccharomycetaceae › Saccharomyces |
Protein attributes
| Sequence length | 1381 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | Functions at the internalization step of the clathrin-mediated endocytosis (CME) as an early-acting scaffold protein. Requires clathrin adapter proteins, ENT1/2 and YAP1801/2, for normal spatiotemporal dynamics and viability. Binds to biological membranes in a ubiquitin-dependent manner. Ref.4 Ref.7 Ref.10 Ref.15 |
| Subunit structure | Interacts (via UBA domain) with monoubiquitin and ENT1 (via asparagine-proline-phenylalanine tripeptide motif called NPF). Ref.7 Ref.17 |
| Subcellular location | Cytoplasm. Note: Localized to actin cortical patches concentrated in the developing bud tip in cells with small buds and at the mother-daughter neck in cells undergoing cytokinesis. Localization can be maintained in the absence of polymerized actin filaments. Ref.4 Ref.15 Ref.5 Ref.8 |
| Disruption phenotype | Random budding pattern and morphological defects. Defects in fluid-phase endocytosis and defective internalization of the pheromone alpha-factor and uracil permease. Deletion has only a small impact on actin cytoskeleton organization. Deletion shows synthetic growth defects with thermosensitive mutants of PAN1, END3 and RSP5. Ref.4 Ref.5 |
| Miscellaneous | Present with 1380 molecules/cell in log phase SD medium. Ref.9 |
| Sequence similarities | Belongs to the VDP/USO1/EDE1 family. Contains 3 EH domains. Contains 1 UBA domain. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Endocytosis |
| Cellular component | Cytoplasm |
| Domain | Coiled coil Repeat |
| PTM | Phosphoprotein |
| Technical term | 3D-structure Complete proteome |
| Gene Ontology (GO) | |
| Biological process | endocytosis Ref.4 Inferred from mutant phenotype. Source: SGD endoplasmic reticulum unfolded protein responseInferred from mutant phenotype. Source: SGD |
| Cellular component | actin cortical patch Ref.4 Inferred from direct assay. Source: SGD cellular bud neck Ref.5Inferred from direct assay. Source: SGD cellular bud tip Ref.5Inferred from direct assay. Source: SGD mating projection tipInferred from direct assay. Source: SGD |
| Molecular function | calcium ion binding Inferred from electronic annotation. Source: InterPro ubiquitin binding Ref.17Inferred from direct assay. Source: SGD |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||||||||||
Molecule processing | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1381 | 1381 | EH domain-containing and endocytosis protein 1 | PRO_0000202457 | ||||||||||||
Regions | ||||||||||||||||
| Domain | 14 – 113 | 100 | EH 1 | |||||||||||||
| Domain | 135 – 227 | 93 | EH 2 | |||||||||||||
| Domain | 277 – 366 | 90 | EH 3 | |||||||||||||
| Domain | 1338 – 1380 | 43 | UBA | |||||||||||||
| Region | 1217 – 1381 | 165 | Able to bind biological membranes | |||||||||||||
| Coiled coil | 593 – 882 | 290 | Potential | |||||||||||||
| Compositional bias | 550 – 575 | 26 | Ala-rich | |||||||||||||
Amino acid modifications | ||||||||||||||||
| Modified residue | 238 | 1 | Phosphothreonine Ref.12 Ref.16 | |||||||||||||
| Modified residue | 241 | 1 | Phosphoserine Ref.12 Ref.16 Ref.6 Ref.11 Ref.14 | |||||||||||||
| Modified residue | 244 | 1 | Phosphoserine Ref.12 Ref.16 Ref.14 | |||||||||||||
| Modified residue | 245 | 1 | Phosphothreonine Ref.12 Ref.16 Ref.6 Ref.11 | |||||||||||||
| Modified residue | 248 | 1 | Phosphoserine Ref.12 Ref.16 | |||||||||||||
| Modified residue | 249 | 1 | Phosphoserine Ref.12 Ref.16 | |||||||||||||
| Modified residue | 251 | 1 | Phosphothreonine Ref.16 | |||||||||||||
| Modified residue | 261 | 1 | Phosphothreonine Ref.16 | |||||||||||||
| Modified residue | 265 | 1 | Phosphoserine Ref.16 | |||||||||||||
| Modified residue | 419 | 1 | Phosphoserine Ref.16 | |||||||||||||
| Modified residue | 423 | 1 | Phosphoserine Ref.16 | |||||||||||||
| Modified residue | 433 | 1 | Phosphoserine Ref.16 | |||||||||||||
| Modified residue | 438 | 1 | Phosphoserine Ref.16 | |||||||||||||
| Modified residue | 487 | 1 | Phosphothreonine Ref.12 Ref.16 | |||||||||||||
| Modified residue | 489 | 1 | Phosphothreonine Ref.16 | |||||||||||||
| Modified residue | 495 | 1 | Phosphoserine Ref.16 | |||||||||||||
| Modified residue | 511 | 1 | Phosphoserine Ref.16 | |||||||||||||
| Modified residue | 513 | 1 | Phosphothreonine Ref.16 | |||||||||||||
| Modified residue | 527 | 1 | Phosphoserine Ref.14 | |||||||||||||
| Modified residue | 534 | 1 | Phosphoserine Ref.16 | |||||||||||||
| Modified residue | 603 | 1 | Phosphothreonine Ref.16 | |||||||||||||
| Modified residue | 848 | 1 | Phosphoserine Ref.16 | |||||||||||||
| Modified residue | 911 | 1 | Phosphoserine Ref.13 | |||||||||||||
| Modified residue | 931 | 1 | Phosphoserine Ref.16 | |||||||||||||
| Modified residue | 950 | 1 | Phosphoserine Ref.16 | |||||||||||||
| Modified residue | 964 | 1 | Phosphoserine Ref.16 | |||||||||||||
| Modified residue | 1006 | 1 | Phosphoserine Ref.16 Ref.14 | |||||||||||||
| Modified residue | 1008 | 1 | Phosphoserine Ref.16 Ref.14 | |||||||||||||
| Modified residue | 1011 | 1 | Phosphoserine Ref.16 | |||||||||||||
| Modified residue | 1012 | 1 | Phosphoserine Ref.16 | |||||||||||||
| Modified residue | 1020 | 1 | Phosphoserine Ref.16 | |||||||||||||
| Modified residue | 1062 | 1 | Phosphothreonine Ref.16 | |||||||||||||
| Modified residue | 1064 | 1 | Phosphoserine Ref.16 | |||||||||||||
| Modified residue | 1065 | 1 | Phosphothreonine Ref.16 | |||||||||||||
| Modified residue | 1069 | 1 | Phosphoserine Ref.16 | |||||||||||||
| Modified residue | 1072 | 1 | Phosphothreonine Ref.16 | |||||||||||||
| Modified residue | 1087 | 1 | Phosphoserine Ref.16 Ref.14 | |||||||||||||
| Modified residue | 1093 | 1 | Phosphoserine Ref.12 Ref.16 Ref.14 Ref.13 | |||||||||||||
| Modified residue | 1095 | 1 | Phosphoserine Ref.16 Ref.14 Ref.13 | |||||||||||||
| Modified residue | 1096 | 1 | Phosphoserine Ref.12 Ref.16 Ref.14 | |||||||||||||
| Modified residue | 1100 | 1 | Phosphoserine Ref.12 Ref.16 Ref.14 Ref.13 | |||||||||||||
| Modified residue | 1111 | 1 | Phosphothreonine Ref.16 | |||||||||||||
| Modified residue | 1160 | 1 | Phosphothreonine Ref.16 | |||||||||||||
| Modified residue | 1161 | 1 | Phosphoserine Ref.16 | |||||||||||||
| Modified residue | 1178 | 1 | Phosphothreonine Ref.16 | |||||||||||||
| Modified residue | 1179 | 1 | Phosphoserine Ref.14 Ref.13 | |||||||||||||
| Modified residue | 1181 | 1 | Phosphoserine Ref.16 Ref.13 | |||||||||||||
| Modified residue | 1307 | 1 | Phosphothreonine Ref.12 Ref.16 Ref.11 | |||||||||||||
| Modified residue | 1309 | 1 | Phosphoserine Ref.16 | |||||||||||||
| Modified residue | 1339 | 1 | Phosphothreonine Ref.16 | |||||||||||||
| Modified residue | 1340 | 1 | Phosphothreonine Ref.16 Ref.6 Ref.14 Ref.13 | |||||||||||||
| Modified residue | 1343 | 1 | Phosphoserine Ref.16 Ref.14 | |||||||||||||
Experimental info | ||||||||||||||||
| Mutagenesis | 56 | 1 | W → A: Abnormal spatiotemporal behavior. Ref.15 | |||||||||||||
| Mutagenesis | 176 | 1 | W → A: Abnormal spatiotemporal behavior. Ref.15 | |||||||||||||
| Mutagenesis | 319 | 1 | W → A: Abnormal spatiotemporal behavior. Ref.15 | |||||||||||||
| Mutagenesis | 1352 | 1 | M → A: Reduced ubiquitin-binding. Ref.17 | |||||||||||||
| Mutagenesis | 1370 | 1 | L → A: Reduced ubiquitin-binding. Ref.17 | |||||||||||||
| Mutagenesis | 1374 | 1 | T → A: Enhanced ubiquitin-binding. Ref.17 | |||||||||||||
| Mutagenesis | 1378 | 1 | L → A: Reduced ubiquitin-binding. Ref.17 | |||||||||||||
Secondary structure | ||||||||||||||||
Helix Strand Turn | ||||||||||||||||
| Helix | 1341 – 1350 | 10 | ||||||||||||||
| Turn | 1351 – 1353 | 3 | ||||||||||||||
| Helix | 1356 – 1365 | 10 | ||||||||||||||
| Helix | 1370 – 1378 | 9 | ||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Complete DNA sequence of yeast chromosome II." Feldmann H., Aigle M., Aljinovic G., Andre B., Baclet M.C., Barthe C., Baur A., Becam A.-M., Biteau N., Boles E., Brandt T., Brendel M., Brueckner M., Bussereau F., Christiansen C., Contreras R., Crouzet M., Cziepluch C. Kleine K.EMBO J. 13:5795-5809(1994) [PubMed: 7813418] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 204508 / S288c. |
| [2] | "The sequence of a 22.4 kb DNA fragment from the left arm of yeast chromosome II reveals homologues to bacterial proline synthetase and murine alpha-adaptin, as well as a new permease and a DNA-binding protein." de Wergifosse P., Jacques B., Jonniaux J.-L., Purnelle B., Skala J., Goffeau A. Yeast 10:1489-1496(1994) [PubMed: 7871888] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-961. Strain: ATCC 204508 / S288c. |
| [3] | "Sequencing and functional analysis of a 32,560 bp segment on the left arm of yeast chromosome II. Identification of 26 open reading frames, including the KIP1 and SEC17 genes." Scherens B., el Bakkoury M., Vierendeels F., Dubois E., Messenguy F. Yeast 9:1355-1371(1993) [PubMed: 8154187] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 579-1381. Strain: ATCC 204508 / S288c. |
| [4] | "A novel EH domain protein of Saccharomyces cerevisiae, Ede1p, involved in endocytosis." Gagny B., Wiederkehr A., Dumoulin P., Winsor B., Riezman H., Haguenauer-Tsapis R. J. Cell Sci. 113:3309-3319(2000) [PubMed: 10954428] [Abstract] Cited for: FUNCTION, SUBCELLULAR LOCATION, DISRUPTION PHENOTYPE. |
| [5] | "A genomic study of the bipolar bud site selection pattern in Saccharomyces cerevisiae." Ni L., Snyder M. Mol. Biol. Cell 12:2147-2170(2001) [PubMed: 11452010] [Abstract] Cited for: DISRUPTION PHENOTYPE, SUBCELLULAR LOCATION. |
| [6] | "Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae." Ficarro S.B., McCleland M.L., Stukenberg P.T., Burke D.J., Ross M.M., Shabanowitz J., Hunt D.F., White F.M. Nat. Biotechnol. 20:301-305(2002) [PubMed: 11875433] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-241; THR-245 AND THR-1340, MASS SPECTROMETRY. |
| [7] | "The yeast Epsin Ent1 is recruited to membranes through multiple independent interactions." Aguilar R.C., Watson H.A., Wendland B. J. Biol. Chem. 278:10737-10743(2003) [PubMed: 12529323] [Abstract] Cited for: FUNCTION, INTERACTION WITH UBIQUITIN AND ENT1, REGION. |
| [8] | "Global analysis of protein localization in budding yeast." Huh W.-K., Falvo J.V., Gerke L.C., Carroll A.S., Howson R.W., Weissman J.S., O'Shea E.K. Nature 425:686-691(2003) [PubMed: 14562095] [Abstract] Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS]. |
| [9] | "Global analysis of protein expression in yeast." Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N., O'Shea E.K., Weissman J.S. Nature 425:737-741(2003) [PubMed: 14562106] [Abstract] Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS]. |
| [10] | "A modular design for the clathrin- and actin-mediated endocytosis machinery." Kaksonen M., Toret C.P., Drubin D.G. Cell 123:305-320(2005) [PubMed: 16239147] [Abstract] Cited for: FUNCTION, DISRUPTION MUTANT. |
| [11] | "Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway." Gruhler A., Olsen J.V., Mohammed S., Mortensen P., Faergeman N.J., Mann M., Jensen O.N. Mol. Cell. Proteomics 4:310-327(2005) [PubMed: 15665377] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-241; THR-245 AND THR-1307, MASS SPECTROMETRY. |
| [12] | "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae." Li X., Gerber S.A., Rudner A.D., Beausoleil S.A., Haas W., Villen J., Elias J.E., Gygi S.P. J. Proteome Res. 6:1190-1197(2007) [PubMed: 17330950] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-238; SER-241; SER-244; THR-245; SER-248; SER-249; THR-487; SER-1093; SER-1096; SER-1100 AND THR-1307, MASS SPECTROMETRY. |
| [13] | "Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry." Chi A., Huttenhower C., Geer L.Y., Coon J.J., Syka J.E.P., Bai D.L., Shabanowitz J., Burke D.J., Troyanskaya O.G., Hunt D.F. Proc. Natl. Acad. Sci. U.S.A. 104:2193-2198(2007) [PubMed: 17287358] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-911; SER-1093; SER-1095; SER-1100; SER-1179; SER-1181 AND THR-1340, MASS SPECTROMETRY. |
| [14] | "Proteome-wide identification of in vivo targets of DNA damage checkpoint kinases." Smolka M.B., Albuquerque C.P., Chen S.H., Zhou H. Proc. Natl. Acad. Sci. U.S.A. 104:10364-10369(2007) [PubMed: 17563356] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-241; SER-244; SER-527; SER-1006; SER-1008; SER-1087; SER-1093; SER-1095; SER-1096; SER-1100; SER-1179; THR-1340 AND SER-1343, MASS SPECTROMETRY. |
| [15] | "Interaction between Epsin/Yap180 adaptors and the scaffolds Ede1/Pan1 is required for endocytosis." Maldonado-Baez L., Dores M.R., Perkins E.M., Drivas T.G., Hicke L., Wendland B. Mol. Biol. Cell 19:2936-2948(2008) [PubMed: 18448668] [Abstract] Cited for: FUNCTION, SUBCELLULAR LOCATION, MUTAGENESIS OF TRP-56; TRP-176 AND TRP-319. |
| [16] | "A multidimensional chromatography technology for in-depth phosphoproteome analysis." Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H. Mol. Cell. Proteomics 7:1389-1396(2008) [PubMed: 18407956] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-238; SER-241; SER-244; THR-245; SER-248; SER-249; THR-251; THR-261; SER-265; SER-419; SER-423; SER-433; SER-438; THR-487; THR-489; SER-495; SER-511; THR-513; SER-534; THR-603; SER-848; SER-931; SER-950; SER-964; SER-1006; SER-1008; SER-1011; SER-1012; SER-1020; THR-1062; SER-1064; THR-1065; SER-1069; THR-1072; SER-1087; SER-1093; SER-1095; SER-1096; SER-1100; THR-1111; THR-1160; SER-1161; THR-1178; SER-1181; THR-1307; SER-1309; THR-1339; THR-1340 AND SER-1343, MASS SPECTROMETRY. |
| [17] | "Structural basis for monoubiquitin recognition by the Ede1 UBA domain." Swanson K.A., Hicke L., Radhakrishnan I. J. Mol. Biol. 358:713-724(2006) [PubMed: 16563434] [Abstract] Cited for: STRUCTURE BY NMR OF 1339-1381 IN COMPLEX WITH MONOUBIQUITIN, IDENTIFICATION BY MASS SPECTROMETRY, INTERACTION WITH MONOUBIQUITIN, UBA DOMAIN, MUTAGENESIS OF MET-1352; LEU-1370; THR-1374 AND LEU-1378. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Z35808 Genomic DNA. Translation: CAA84867.1. X78214 Genomic DNA. Translation: CAA55048.1. Z23261 Genomic DNA. Translation: CAA80797.1. | |||||||||||||
| PIR | S45781. | ||||||||||||
| RefSeq | NP_009506.1. | ||||||||||||
3D structure databases | |||||||||||||
| |||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| DIP | DIP-5817N. | ||||||||||||
| IntAct | P34216. 28 interactions. | ||||||||||||
| STRING | P34216. | ||||||||||||
Proteomic databases | |||||||||||||
| PeptideAtlas | P34216. | ||||||||||||
| PRIDE | P34216. | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | YBL047C; YBL047C; YBL047C; Saccharomyces cerevisiae. [Genome view] | ||||||||||||
| GeneID | 852233. | ||||||||||||
| KEGG | sce:YBL047C. | ||||||||||||
| NMPDR | fig|4932.3.peg.196. | ||||||||||||
Organism-specific databases | |||||||||||||
| CYGD | YBL047c. | ||||||||||||
| SGD | S000000143. EDE1. | ||||||||||||
Phylogenomic databases | |||||||||||||
| HOGENOM | HBG204251. | ||||||||||||
| OMA | NDEWEQL. | ||||||||||||
| OrthoDB | EOG9641VM. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | P34216. | ||||||||||||
| Genevestigator | P34216. | ||||||||||||
| GermOnline | YBL047C. Saccharomyces cerevisiae. | ||||||||||||
Family and domain databases | |||||||||||||
| InterPro | IPR011992. EF-Hand_type. IPR018247. EF_Hand_1_Ca_BS. IPR018249. EF_HAND_2. IPR002048. EF_hand_Ca_bd. IPR018248. EF_Hand_dom. IPR000261. EPS15_homology. IPR009060. UBA-like. IPR000449. UBA/transl_elong_EF1B_N. IPR015940. UBA/transl_elong_EF1B_N_euk. [Graphical view] | ||||||||||||
| Gene3D | G3DSA:1.10.238.10. EF-Hand_type. 3 hits. | ||||||||||||
| Pfam | PF00036. efhand. 1 hit. PF00627. UBA. 1 hit. [Graphical view] | ||||||||||||
| SMART | SM00054. EFh. 2 hits. SM00027. EH. 3 hits. SM00165. UBA. 1 hit. [Graphical view] | ||||||||||||
| PROSITE | PS00018. EF_HAND_1. 1 hit. PS50222. EF_HAND_2. 3 hits. PS50031. EH. 3 hits. PS50030. UBA. 1 hit. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other Resources | |||||||||||||
| NextBio | 970769. | ||||||||||||
Entry information
| Entry name | EDE1_YEAST | ||||||||
| Accession | Primary (citable) accession number: P34216 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | FPAP (Fungal Proteome Annotation Project) | ||||||||
Relevant documents
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |
| Yeast Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD |
| Yeast chromosome II Yeast (Saccharomyces cerevisiae) chromosome II: entries and gene names |

Clusters with


