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Protein

Protein YdcF

Gene

ydcF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Binds S-adenosyl-L-methionine (AdoMet).

Enzyme and pathway databases

BioCyciEcoCyc:EG12110-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YdcF
Gene namesi
Name:ydcF
Ordered Locus Names:b1414, JW1411
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12110 ydcF

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001689291 – 266Protein YdcFAdd BLAST266

Proteomic databases

PaxDbiP34209
PRIDEiP34209

Interactioni

Subunit structurei

Monomer.1 Publication

Protein-protein interaction databases

BioGridi4261553, 9 interactors
DIPiDIP-11642N
IntActiP34209, 2 interactors
STRINGi316385.ECDH10B_1540

Structurei

Secondary structure

1266
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi11 – 25Combined sources15
Turni29 – 32Combined sources4
Beta strandi38 – 44Combined sources7
Helixi48 – 61Combined sources14
Beta strandi65 – 68Combined sources4
Helixi75 – 83Combined sources9
Helixi88 – 90Combined sources3
Helixi98 – 108Combined sources11
Helixi114 – 116Combined sources3
Beta strandi117 – 120Combined sources4
Helixi126 – 138Combined sources13
Beta strandi147 – 150Combined sources4
Turni153 – 155Combined sources3
Helixi156 – 167Combined sources12
Beta strandi175 – 178Combined sources4
Beta strandi186 – 189Combined sources4
Beta strandi192 – 197Combined sources6
Helixi205 – 219Combined sources15
Beta strandi225 – 227Combined sources3
Turni228 – 231Combined sources4
Helixi241 – 251Combined sources11
Helixi254 – 262Combined sources9

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3CA8X-ray1.80A/B1-266[»]
ProteinModelPortaliP34209
SMRiP34209
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP34209

Family & Domainsi

Sequence similaritiesi

To S.coelicolor SCO4629.Curated

Phylogenomic databases

eggNOGiENOG4107DB1 Bacteria
COG1434 LUCA
HOGENOMiHOG000120552
InParanoidiP34209
OMAiILCQDAT
PhylomeDBiP34209

Family and domain databases

CDDicd06259 YdcF-like, 1 hit
Gene3Di3.40.50.620, 1 hit
InterProiView protein in InterPro
IPR003848 DUF218
IPR014729 Rossmann-like_a/b/a_fold
PfamiView protein in Pfam
PF02698 DUF218, 1 hit

Sequencei

Sequence statusi: Complete.

P34209-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNITPFPTLS PATIDAINVI GQWLAQDDFS GEVPYQADCV ILAGNAVMPT
60 70 80 90 100
IDAACKIARD QQIPLLISGG IGHSTTFLYS AIAQHPHYNT IRTTGRAEAT
110 120 130 140 150
ILADIAHQFW HIPHEKIWIE DQSTNCGENA RFSIALLNQA VERVHTAIVV
160 170 180 190 200
QDPTMQRRTM ATFRRMTGDN PDAPRWLSYP GFVPQLGNNA DSVIFINQLQ
210 220 230 240 250
GLWPVERYLS LLTGELPRLR DDSDGYGPRG RDFIVHVDFP AEVIHAWQTL
260
KHDAVLIEAM ESRSLR
Length:266
Mass (Da):29,706
Last modified:November 1, 1997 - v3
Checksum:iDA59CFB3D34728A5
GO

Sequence cautioni

The sequence AAA24246 differs from that shown. Reason: Frameshift at positions 8 and 23.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti97A → R in AAA24246 (Ref. 1) Curated1
Sequence conflicti217 – 266PRLRD…SRSLR → RVYAMIAMATVPAGEILSFT LIFRQKSSMHGKR (Ref. 1) CuratedAdd BLAST50

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L09068 Genomic DNA Translation: AAA24246.1 Frameshift.
U00096 Genomic DNA Translation: AAC74496.1
AP009048 Genomic DNA Translation: BAA15030.1
PIRiA64893
RefSeqiNP_415932.1, NC_000913.3
WP_001027942.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC74496; AAC74496; b1414
BAA15030; BAA15030; BAA15030
GeneIDi946215
KEGGiecj:JW1411
eco:b1414
PATRICifig|1411691.4.peg.857

Similar proteinsi

Entry informationi

Entry nameiYDCF_ECOLI
AccessioniPrimary (citable) accession number: P34209
Secondary accession number(s): P77578
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1994
Last sequence update: November 1, 1997
Last modified: March 28, 2018
This is version 118 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

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