P34021 (ECR_DROME) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 140.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Ecdysone receptor Alternative name(s): 20-hydroxy-ecdysone receptor Short name=20E receptor EcRH Ecdysteroid receptor Nuclear receptor subfamily 1 group H member 1 | ||||||
| Gene names |
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| Organism | Drosophila melanogaster (Fruit fly) | ||||||
| Taxonomic identifier | 7227 [NCBI] | ||||||
| Taxonomic lineage | Eukaryota › Metazoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Brachycera › Muscomorpha › Ephydroidea › Drosophilidae › Drosophila › Sophophora |
Protein attributes
| Sequence length | 878 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Receptor for ecdysone. Binds to ecdysone response elements (ECRES) following ecdysone-binding, and recruitment of a complex containing the histone methyltransferase trr, leads to activate transcription of target genes. Ref.1 |
| Subunit structure | Heterodimer of USP and ECR. Only the heterodimer is capable of high-affinity binding to ecdysone. Interacts with trr in an ecdysone-dependent manner. Ref.7 Ref.9 |
| Subcellular location | |
| Tissue specificity | Isoform B1 predominates over isoform A in larval tissues, imaginal histoblast nests and midgut islands. Isoform A predominates over B1 in imaginal disks, and the larval prothoracic gland. Ref.1 |
| Developmental stage | In the salivary glands of mid instar larvae levels increase during puff stage 1 at 86-94 hours of development then remain relatively constant until the premetamorphic pulse of ecdysone in late larvae. Levels diminish dramatically from puff stage 7 onwards. Levels increase in the prepupal period during puff stage 13-14, the level remains stable until stage 21. A decrease in levels at puff stage 7 is also seen in the Malpighian tubules and less dramatically in the fat body and gut. In the wing disk the relatively low level remains unchanged. Ref.1 Ref.8 |
| Sequence similarities | Belongs to the nuclear hormone receptor family. NR1 subfamily. Contains 1 nuclear receptor DNA-binding domain. |
| Sequence caution | The sequence AAL13804.1 differs from that shown. Reason: Erroneous initiation. |
Ontologies
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform ECR-B1 (identifier: P34021-1) Also known as: B; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform ECR-A (identifier: P34021-2) Also known as: A; D; The sequence of this isoform differs from the canonical sequence as follows: 1-226: MKRRWSNNGG...RSDSVNSISS → MLTTSGQQQS...YDPYSPTGKT | ||||||
| Isoform ECR-B2 (identifier: P34021-3) Also known as: C; The sequence of this isoform differs from the canonical sequence as follows: 1-226: MKRRWSNNGG...RSDSVNSISS → MDTCGLVAELAHYIDAY |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||||||
Molecule processing | |||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 878 | 878 | Ecdysone receptor | PRO_0000053524 | |||||||||||||||||||
Regions | |||||||||||||||||||||||
| DNA binding | 264 – 336 | 73 | Nuclear receptor | ||||||||||||||||||||
| Zinc finger | 264 – 284 | 21 | NR C4-type | ||||||||||||||||||||
| Zinc finger | 300 – 324 | 25 | NR C4-type | ||||||||||||||||||||
| Region | 1 – 263 | 263 | Modulating | ||||||||||||||||||||
| Region | 431 – 651 | 221 | Hormone-binding | ||||||||||||||||||||
| Compositional bias | 165 – 211 | 47 | Gly-rich | ||||||||||||||||||||
| Compositional bias | 193 – 197 | 5 | Poly-Gly | ||||||||||||||||||||
| Compositional bias | 700 – 705 | 6 | Poly-Ala | ||||||||||||||||||||
| Compositional bias | 706 – 781 | 76 | Gln/Pro-rich | ||||||||||||||||||||
Natural variations | |||||||||||||||||||||||
| Alternative sequence | 1 – 226 | 226 | MKRRW…NSISS → MLTTSGQQQSKQKLSTLPSH ILLQQQLAASAGPSSSVSLS PSSSAALTLHVASANGGARE TTSAAAVKDKLRPTPTAIKI EPMPDVISVGTVAGGSSVAT VVAPAATTTSNKPNSTAAPS TSAAAANGHLVLVPNKRPRL DVTEDWMSTPSPGSVPSSAP PLSPSPGSQNHSYNMSNGYA SPMSAGSYDPYSPTGKT in isoform ECR-A. | VSP_003661 | |||||||||||||||||||
| Alternative sequence | 1 – 226 | 226 | MKRRW…NSISS → MDTCGLVAELAHYIDAY in isoform ECR-B2. | VSP_003662 | |||||||||||||||||||
Experimental info | |||||||||||||||||||||||
| Sequence conflict | 867 – 878 | 12 | GVAVK…HSTTA → EWRLSRSTRRLHSRRRVSST NITTTTSTSCWSRKRS in AAL68274. Ref.4 | ||||||||||||||||||||
Secondary structure | |||||||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||||||
| Turn | 265 – 267 | 3 | |||||||||||||||||||||
| Beta strand | 273 – 280 | 8 | |||||||||||||||||||||
| Helix | 282 – 293 | 12 | |||||||||||||||||||||
| Helix | 312 – 315 | 4 | |||||||||||||||||||||
| Helix | 317 – 326 | 10 | |||||||||||||||||||||
| Helix | 331 – 333 | 3 | |||||||||||||||||||||
| Helix | 339 – 343 | 5 | |||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "The Drosophila EcR gene encodes an ecdysone receptor, a new member of the steroid receptor superfamily." Koelle M.R., Talbot W.S., Segraves W.A., Bender M.T., Cherbas P., Hogness D.S. Cell 67:59-77(1991) [PubMed: 1913820] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM ECR-B1), FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, DEVELOPMENTAL STAGE. |
| [2] | "The genome sequence of Drosophila melanogaster." Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. Venter J.C.Science 287:2185-2195(2000) [PubMed: 10731132] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Berkeley. |
| [3] | "Annotation of the Drosophila melanogaster euchromatic genome: a systematic review." Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. Lewis S.E.Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed: 12537572] [Abstract] Cited for: GENOME REANNOTATION, ALTERNATIVE SPLICING. Strain: Berkeley. |
| [4] | "A Drosophila full-length cDNA resource." Stapleton M., Carlson J.W., Brokstein P., Yu C., Champe M., George R.A., Guarin H., Kronmiller B., Pacleb J.M., Park S., Wan K.H., Rubin G.M., Celniker S.E. Genome Biol. 3:RESEARCH0080.1-RESEARCH0080.8(2002) [PubMed: 12537569] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM ECR-A). Strain: Berkeley. Tissue: Embryo. |
| [5] | Stapleton M., Carlson J.W., Chavez C., Frise E., George R.A., Pacleb J.M., Park S., Wan K.H., Yu C., Rubin G.M., Celniker S.E. Submitted (AUG-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM ECR-B1). Strain: Berkeley. Tissue: Embryo. |
| [6] | "Drosophila tissues with different metamorphic responses to ecdysone express different ecdysone receptor isoforms." Talbot W.S., Swyryd E.A., Hogness D.S. Cell 73:1323-1337(1993) [PubMed: 8324824] [Abstract] Cited for: ALTERNATIVE SPLICING. |
| [7] | "Functional ecdysone receptor is the product of EcR and Ultraspiracle genes." Yao T.-P., Froman B.M., Jiang Z., Cherbas L., Chen J.-D., McKeown M.M., Cherbas P., Evans R.M. Nature 366:476-479(1993) [PubMed: 8247157] [Abstract] Cited for: SUBUNIT. |
| [8] | "Puffs and PCR: the in vivo dynamics of early gene expression during ecdysone responses in Drosophila." Huet F., Ruiz C., Richards G. Development 118:613-627(1993) [PubMed: 8223281] [Abstract] Cited for: DEVELOPMENTAL STAGE. |
| [9] | "Methylation at lysine 4 of histone H3 in ecdysone-dependent development of Drosophila." Sedkov Y., Cho E., Petruk S., Cherbas L., Smith S.T., Jones R.S., Cherbas P., Canaani E., Jaynes J.B., Mazo A. Nature 426:78-83(2003) [PubMed: 14603321] [Abstract] Cited for: INTERACTION WITH TRR. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | M74078 mRNA. Translation: AAA28498.1. S63761 mRNA. Translation: AAB27496.2. AE013599 Genomic DNA. Translation: AAF57278.3. AE013599 Genomic DNA. Translation: AAF57280.2. AE013599 Genomic DNA. Translation: AAM68347.1. AY075461 mRNA. Translation: AAL68274.1. AY058575 mRNA. Translation: AAL13804.1. Different initiation. BT012469 mRNA. Translation: AAS93740.1. BT015234 mRNA. Translation: AAT94463.1. | ||||||||||||||||||||||||
| PIR | A40709. A41055. | ||||||||||||||||||||||||
| RefSeq | NP_001163061.1. NM_001169590.1. NP_724456.1. NM_165461.2. NP_724457.1. NM_165462.2. NP_724458.1. NM_165463.2. NP_724459.1. NM_165464.2. NP_724460.1. NM_165465.2. | ||||||||||||||||||||||||
| UniGene | Dm.4159. | ||||||||||||||||||||||||
3D structure databases | |||||||||||||||||||||||||
| PDBe RCSB PDB PDBj |
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| ProteinModelPortal | P34021. | ||||||||||||||||||||||||
| SMR | P34021. Positions 258-652. | ||||||||||||||||||||||||
| ModBase | Search... | ||||||||||||||||||||||||
Protein-protein interaction databases | |||||||||||||||||||||||||
| DIP | DIP-158N. | ||||||||||||||||||||||||
| IntAct | P34021. 30 interactions. | ||||||||||||||||||||||||
| MINT | MINT-294442. | ||||||||||||||||||||||||
| STRING | P34021. | ||||||||||||||||||||||||
Proteomic databases | |||||||||||||||||||||||||
| PRIDE | P34021. | ||||||||||||||||||||||||
Protocols and materials databases | |||||||||||||||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||||||||||||||
Genome annotation databases | |||||||||||||||||||||||||
| EnsemblMetazoa | FBtr0086011; FBpp0085352; FBgn0000546. FBtr0302439; FBpp0291631; FBgn0000546. | ||||||||||||||||||||||||
| GeneID | 35540. | ||||||||||||||||||||||||
| KEGG | dme:Dmel_CG1765. | ||||||||||||||||||||||||
Organism-specific databases | |||||||||||||||||||||||||
| CTD | 35540. | ||||||||||||||||||||||||
| FlyBase | FBgn0000546. EcR. | ||||||||||||||||||||||||
Phylogenomic databases | |||||||||||||||||||||||||
| eggNOG | inNOG06886. | ||||||||||||||||||||||||
| GeneTree | EMGT00070000025663. | ||||||||||||||||||||||||
| InParanoid | P34021. | ||||||||||||||||||||||||
| OMA | MALMGVP. | ||||||||||||||||||||||||
| OrthoDB | EOG431ZD7. | ||||||||||||||||||||||||
| PhylomeDB | P34021. | ||||||||||||||||||||||||
Gene expression databases | |||||||||||||||||||||||||
| Bgee | P34021. | ||||||||||||||||||||||||
| GermOnline | CG1765. Drosophila melanogaster. | ||||||||||||||||||||||||
Family and domain databases | |||||||||||||||||||||||||
| InterPro | IPR003069. Ecdystd_rcpt. IPR008946. Nucl_hormone_rcpt_ligand-bd. IPR000536. Nucl_hrmn_rcpt_lig-bd_core. IPR001723. Str_hrmn_rcpt. IPR001628. Znf_hrmn_rcpt. IPR013088. Znf_NHR/GATA. [Graphical view] | ||||||||||||||||||||||||
| Gene3D | G3DSA:1.10.565.10. Nucl_hrmn_rcpt_lig_bd. 2 hits. G3DSA:3.30.50.10. Znf_NHR/GATA. 1 hit. | ||||||||||||||||||||||||
| KO | K14034. | ||||||||||||||||||||||||
| Pfam | PF00104. Hormone_recep. 1 hit. PF00105. zf-C4. 1 hit. [Graphical view] | ||||||||||||||||||||||||
| PRINTS | PR01283. ECDYSTEROIDR. PR00398. STRDHORMONER. PR00047. STROIDFINGER. | ||||||||||||||||||||||||
| SMART | SM00430. HOLI. 1 hit. SM00399. ZnF_C4. 1 hit. [Graphical view] | ||||||||||||||||||||||||
| SUPFAM | SSF48508. Str_ncl_receptor. 1 hit. | ||||||||||||||||||||||||
| PROSITE | PS00031. NUCLEAR_REC_DBD_1. 1 hit. PS51030. NUCLEAR_REC_DBD_2. 1 hit. [Graphical view] | ||||||||||||||||||||||||
| ProtoNet | Search... | ||||||||||||||||||||||||
Other | |||||||||||||||||||||||||
| NextBio | 793933. | ||||||||||||||||||||||||
Entry information
| Entry name | ECR_DROME | ||||||||
| Accession | Primary (citable) accession number: P34021 Secondary accession number(s): Q0E9N8 Q9V9K8 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Drosophila annotation project | ||||||||
Relevant documents
| Drosophila Drosophila: entries, gene names and cross-references to FlyBase |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with