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Protein

Putative uncharacterized protein YdbA

Gene

ydbA

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein uncertaini

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6722-MONOMER.
EcoCyc:G8204-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative uncharacterized protein YdbA
Gene namesi
Name:ydbA
Ordered Locus Names:b4492, JW5802/JW1402
ORF Names:b1401/b1405
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11307. ydbA.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 20032003Putative uncharacterized protein YdbAPRO_0000168920Add
BLAST

Proteomic databases

PRIDEiP33666.

Interactioni

Protein-protein interaction databases

DIPiDIP-11631N.
IntActiP33666. 8 interactions.

Structurei

3D structure databases

ProteinModelPortaliP33666.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1701 – 2003303AutotransporterPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 autotransporter (TC 1.B.12) domain. [View classification]PROSITE-ProRule annotation

Phylogenomic databases

HOGENOMiHOG000120520.
InParanoidiP33666.
PhylomeDBiP33666.

Family and domain databases

InterProiIPR005546. Autotransporte_beta.
[Graphical view]
PfamiPF03797. Autotransporter. 1 hit.
[Graphical view]
SUPFAMiSSF103515. SSF103515. 1 hit.
PROSITEiPS51208. AUTOTRANSPORTER. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P33666-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQRKTLLSAC IALALSGQGW AADITEVETT TGEKKNTNVT CPADPGKLSP
60 70 80 90 100
EELKRLPSEC SPLVEQNLMP WLSTGAAALI TALAVVELND DDDHHHRNNS
110 120 130 140 150
PLPPTPPDDE SDDTPVPPTP GGDEIIPDDP DDTPTPPKPV SFNNDVILDK
160 170 180 190 200
TEKTLTIRDS VFTYTENADG TISLQDSNGR KATINLWQID EANNTVALEG
210 220 230 240 250
VSADGATKWQ YNHNGELVIT GDNATVNNNG KTTVDGKDST GTEINGNNGK
260 270 280 290 300
VIQDGDLDVS GGGHGIDITG DSATVDNKGT MTVTDPESMG IQIDGDKAIV
310 320 330 340 350
NNEGESTITN GGTGTQINGD DATANNNGKT TVDGKDSTGT EINGNNGKVI
360 370 380 390 400
QDGDLDVSGG GHGIDITGDS ATVDNKGTMT VTDPESIGIQ VDGDQAVVNN
410 420 430 440 450
EGESAITNGG TGTQINGDDA TANNNGKTTV DGKDSTGTEI AGNNGKVIQD
460 470 480 490 500
GDLDVSGGGH GIDITGDSAT VDNKGTMTVT DPESIGIQID GDQAIVNNEG
510 520 530 540 550
ESTITNGGTG TQINGNDATA NNSGKTTVDG KDSTGTKIAG NIGIVNLDGS
560 570 580 590 600
LTVTGGAHGV ENIGDNGTVN NKGDIVVSDT GSIGVLINGE GATVSNTGDV
610 620 630 640 650
NVSNEATGFS ITTNSGKVSL AGSMQVGDFS TGVDLNGNNN SVTLAAKDLK
660 670 680 690 700
VVGQKATGIN VSGDANTVNI TGNVLVDKDK TADNAAEYFF DPSVGINVYG
710 720 730 740 750
SDNNVTLDGK LTVVSDSEVT SRQSNLFDGS AEKTSGLVVI GDGNTVNMNG
760 770 780 790 800
GLELIGEKNA LADGSQVTSL RTGYSYTSVI VVSGESSVYL NGDTTISGEF
810 820 830 840 850
PLGFAGVIRV QDKALLEIGS GATLTMQDID SFEHHGTRTV EIQNLGFAFV
860 870 880 890 900
TGENTTGINS GTISLLQNGK DPAPSPIVLL ATNGGSATNA GTITGKVTEQ
910 920 930 940 950
HSVFNKYSTG TSNSFIFNND VSSITGLVAQ SNSTIINTDS GIIDLYGRGS
960 970 980 990 1000
VGMLAIADST AENQGKITLD SMWVDANDTT AMRDIASNSA IDFGTGVGVG
1010 1020 1030 1040 1050
TDSYSGAGKN ATAINQLGGV ITIYNAGAGM AAYGASNTVI NQGTINLEKN
1060 1070 1080 1090 1100
GNYDDSLAAN TLVGMAVYEH GTAINDQTGV ININVGTGQA FYNDGTGTIV
1110 1120 1130 1140 1150
NYGTICTFGV CQSGNEYNNT DDFTSLIYTG GDTITRSGET VTLNKSAAVT
1160 1170 1180 1190 1200
DKLAGNVVNS GTLSGDQITV SSGLLENTSG GIINNLVKLD KGAVIKNAGV
1210 1220 1230 1240 1250
MTNNVDVSGG ILNNAGEMTA QITMNAGADS SLVNNTGTIN KIVQNAGVFN
1260 1270 1280 1290 1300
NSGSVTGRMM SAGGVFNNQT DGAIMRGAAL TGTAVANNEG TWNLGSSSEG
1310 1320 1330 1340 1350
NNTGMLEVNN NSAFNNRGEF ILDNDKNAVH INQSGTLYNT GHMNISNSSH
1360 1370 1380 1390 1400
NGAVNMWGGN GRFINDGTID VSAKSLVVSA NNAGDQNAFF WNQDNGVINF
1410 1420 1430 1440 1450
DHDSASAVKV THSNFIAQND GIMNISGTGA VAMEGDKNAQ LVNNGTINLG
1460 1470 1480 1490 1500
TAGTTDTGMI GMQLDANATA DAVIENNGTI NIFANDSFAF SVLGTVGHVV
1510 1520 1530 1540 1550
NNGTVVIADG VTGSGLIKQG DSINVEGMNG NNGNSSEVHY GDYTLPDVPK
1560 1570 1580 1590 1600
PNTVSVTSGS DEAGGSMNNL NGYVVGTNVN GSAGKLKVNN ASMNGVEINT
1610 1620 1630 1640 1650
GFTAGTADTT VSFDNVVEGS NLTDADAITS TSVVWTAKGS TDASGNVDVT
1660 1670 1680 1690 1700
MSKNAYTDVA TDASVNDIAK ALDAGYTNNE LFTSLNVGTT AELNSALKQV
1710 1720 1730 1740 1750
SGSQATTVFR EARVLSNRFS MLADAAPKVG NGLAFNVVAK GDPRAELGNN
1760 1770 1780 1790 1800
TEYDMLALRK TIDLSESQTM SLEYGIARLD GDGAQKAGDN GVTGGYSQFF
1810 1820 1830 1840 1850
GLKHQMSFDN GMNWNNALRY DVHNLDSSRS IAFGNTNKTA DTDVKQQYLE
1860 1870 1880 1890 1900
FRSEGAKTFE PSEGLKVTPY AGVKLRHTLE GGYQERNAGD FNLNMNSGSE
1910 1920 1930 1940 1950
TAVDSIVGLK LDYAGKDGWS ASATLEGGPN LSYAKSQRTA SLAGAGSQHF
1960 1970 1980 1990 2000
NVDDGQKGGG INSLTSVGVK YSSKESSLNL DAYNWKEDGI SDKGVMLNFK

KTF
Length:2,003
Mass (Da):205,949
Last modified:December 1, 2000 - v2
Checksum:iB83A12C8B53220EE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. No translation available.
X62680 Genomic DNA. No translation available.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. No translation available.
X62680 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortaliP33666.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-11631N.
IntActiP33666. 8 interactions.

Proteomic databases

PRIDEiP33666.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

EchoBASEiEB1284.
EcoGeneiEG11307. ydbA.

Phylogenomic databases

HOGENOMiHOG000120520.
InParanoidiP33666.
PhylomeDBiP33666.

Enzyme and pathway databases

BioCyciEcoCyc:G6722-MONOMER.
EcoCyc:G8204-MONOMER.

Family and domain databases

InterProiIPR005546. Autotransporte_beta.
[Graphical view]
PfamiPF03797. Autotransporter. 1 hit.
[Graphical view]
SUPFAMiSSF103515. SSF103515. 1 hit.
PROSITEiPS51208. AUTOTRANSPORTER. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], SEQUENCE REVISION TO 489 AND 495.
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Multiple IS insertion sequences near the replication terminus in Escherichia coli K-12."
    Moszer I., Glaser P., Danchin A.
    Biochimie 73:1361-1374(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 464-2003.
    Strain: K12.

Entry informationi

Entry nameiYDBA_ECOLI
AccessioniPrimary (citable) accession number: P33666
Secondary accession number(s): P76087
, P76088, P76856, P76857, P76859
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1994
Last sequence update: December 1, 2000
Last modified: May 11, 2016
This is version 81 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Could be the product of a pseudogene. The gene coding for this protein is interrupted by a hybrid IS2D/IS30C element between amino acids 839 and 840.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.