Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Putative exported protein YdbA

Gene

ydbA

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein uncertaini

Functioni

The full-length protein (which is about 2000 amino acids long) is part of the autotransporter family.Curated

Enzyme and pathway databases

BioCyciEcoCyc:G6722-MONOMER.
EcoCyc:G8204-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative exported protein YdbA
Gene namesi
Name:ydbA
Ordered Locus Names:b4492, JW5802/JW1402
ORF Names:b1401/b1405
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11307. ydbA.

Subcellular locationi

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 21Sequence analysisAdd BLAST21
ChainiPRO_000016892022 – 852Putative exported protein YdbAAdd BLAST831

Proteomic databases

PRIDEiP33666.

Interactioni

Protein-protein interaction databases

DIPiDIP-11631N.
IntActiP33666. 8 interactors.

Structurei

3D structure databases

ProteinModelPortaliP33666.
SMRiP33666.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi101 – 139Pro-richPROSITE-ProRule annotationAdd BLAST39
Compositional biasi236 – 591Gly-richPROSITE-ProRule annotationAdd BLAST356

Keywords - Domaini

Signal

Phylogenomic databases

HOGENOMiHOG000120520.
InParanoidiP33666.
PhylomeDBiP33666.

Family and domain databases

InterProiView protein in InterPro
IPR005546. Autotransporte_beta.
SUPFAMiSSF103515. SSF103515. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P33666-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQRKTLLSAC IALALSGQGW AADITEVETT TGEKKNTNVT CPADPGKLSP
60 70 80 90 100
EELKRLPSEC SPLVEQNLMP WLSTGAAALI TALAVVELND DDDHHHRNNS
110 120 130 140 150
PLPPTPPDDE SDDTPVPPTP GGDEIIPDDP DDTPTPPKPV SFNNDVILDK
160 170 180 190 200
TEKTLTIRDS VFTYTENADG TISLQDSNGR KATINLWQID EANNTVALEG
210 220 230 240 250
VSADGATKWQ YNHNGELVIT GDNATVNNNG KTTVDGKDST GTEINGNNGK
260 270 280 290 300
VIQDGDLDVS GGGHGIDITG DSATVDNKGT MTVTDPESMG IQIDGDKAIV
310 320 330 340 350
NNEGESTITN GGTGTQINGD DATANNNGKT TVDGKDSTGT EINGNNGKVI
360 370 380 390 400
QDGDLDVSGG GHGIDITGDS ATVDNKGTMT VTDPESIGIQ VDGDQAVVNN
410 420 430 440 450
EGESAITNGG TGTQINGDDA TANNNGKTTV DGKDSTGTEI AGNNGKVIQD
460 470 480 490 500
GDLDVSGGGH GIDITGDSAT VDNKGTMTVT DPESIGIQID GDQAIVNNEG
510 520 530 540 550
ESTITNGGTG TQINGNDATA NNSGKTTVDG KDSTGTKIAG NIGIVNLDGS
560 570 580 590 600
LTVTGGAHGV ENIGDNGTVN NKGDIVVSDT GSIGVLINGE GATVSNTGDV
610 620 630 640 650
NVSNEATGFS ITTNSGKVSL AGSMQVGDFS TGVDLNGNNN SVTLAAKDLK
660 670 680 690 700
VVGQKATGIN VSGDANTVNI TGNVLVDKDK TADNAAEYFF DPSVGINVYG
710 720 730 740 750
SDNNVTLDGK LTVVSDSEVT SRQSNLFDGS AEKTSGLVVI GDGNTVNMNG
760 770 780 790 800
GLELIGEKNA LADGSQVTSL RTGYSYTSVI VVSGESSVYL NGDTTISGEF
810 820 830 840 850
PLGFAGVIRV QDKALLEIGS GATLTMQDID SFEHHGTRTL DLPLYFQTSV

IT
Length:852
Mass (Da):87,130
Last modified:September 27, 2017 - v3
Checksum:iB80CFA3EE8228C01
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. No translation available.
X62680 Genomic DNA. No translation available.

Similar proteinsi

Entry informationi

Entry nameiYDBA_ECOLI
AccessioniPrimary (citable) accession number: P33666
Secondary accession number(s): P76087
, P76088, P76856, P76857, P76859
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1994
Last sequence update: September 27, 2017
Last modified: September 27, 2017
This is version 86 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Could be the product of a pseudogene. The gene coding for this protein is interrupted by a hybrid IS2D/IS30C element between amino acids 839 and 840.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene