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Protein

Uncharacterized HTH-type transcriptional regulator YfiE

Gene

yfiE

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi18 – 37H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

  • transcription, DNA-templated Source: EcoCyc

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:EG11785-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YfiE
Gene namesi
Name:yfiE
Ordered Locus Names:b2577, JW2561
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11785 yfiE

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001057931 – 293Uncharacterized HTH-type transcriptional regulator YfiEAdd BLAST293

Proteomic databases

PaxDbiP33634
PRIDEiP33634

Interactioni

Protein-protein interaction databases

BioGridi4261636, 18 interactors
IntActiP33634, 3 interactors
STRINGi316385.ECDH10B_2745

Structurei

3D structure databases

ProteinModelPortaliP33634
SMRiP33634
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 58HTH lysR-typePROSITE-ProRule annotationAdd BLAST58

Phylogenomic databases

eggNOGiENOG41090KR Bacteria
ENOG4111QDM LUCA
HOGENOMiHOG000233521
InParanoidiP33634
OMAiLNNPIVA
PhylomeDBiP33634

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR005119 LysR_subst-bd
IPR000847 Tscrpt_reg_HTH_LysR
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF00126 HTH_1, 1 hit
PF03466 LysR_substrate, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS50931 HTH_LYSR, 1 hit

Sequencei

Sequence statusi: Complete.

P33634-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDLRRFITLK TVVEEGSFLR ASQKLCCTQS TVTFHIQQLE QEFSVQLFEK
60 70 80 90 100
IGRRMCLTRE GKKLLPHIYE LTRVMDTLRE AAKKESDPDG ELRVVSGETL
110 120 130 140 150
LSYRMPQVLQ RFRQRAPKVR LSLQSLNCYV IRDALLNDEA DVGVFYRVGN
160 170 180 190 200
DDALNRRELG EQSLVLVASP QIADVDFTEP GRHNACSFII NEPQCVFRQI
210 220 230 240 250
FESTLRQRRI TVENTIELIS IESIKRCVAA NIGVSYLPRF AVAKELECGE
260 270 280 290
LIELPFGEQS QTITAMCAHH AGKAVSPAMH TFIQCVEESF VAG
Length:293
Mass (Da):33,243
Last modified:November 1, 1997 - v2
Checksum:i1C54C96647799632
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti209 – 293RITVE…SFVAG → DHGGKHH in D13169 (Ref. 1) CuratedAdd BLAST85
Sequence conflicti209 – 293RITVE…SFVAG → DHGGKHH in D64044 (Ref. 2) CuratedAdd BLAST85

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D13169 Genomic DNA No translation available.
D64044 Genomic DNA No translation available.
U00096 Genomic DNA Translation: AAC75630.2
AP009048 Genomic DNA Translation: BAA20920.2
PIRiH65035
RefSeqiNP_417072.4, NC_000913.3
WP_001300638.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC75630; AAC75630; b2577
BAA20920; BAA20920; BAA20920
GeneIDi947064
KEGGiecj:JW2561
eco:b2577
PATRICifig|1411691.4.peg.4157

Similar proteinsi

Entry informationi

Entry nameiYFIE_ECOLI
AccessioniPrimary (citable) accession number: P33634
Secondary accession number(s): P76592, P76998
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1994
Last sequence update: November 1, 1997
Last modified: March 28, 2018
This is version 124 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

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