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P33487

- ABP1_ARATH

UniProt

P33487 - ABP1_ARATH

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Protein

Auxin-binding protein 1

Gene

ERABP1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli

Functioni

This is probably a receptor for the plant hormone auxin.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi92 – 921ZincBy similarity
Binding sitei92 – 921AuxinBy similarity
Metal bindingi94 – 941ZincBy similarity
Metal bindingi98 – 981ZincBy similarity
Binding sitei98 – 981AuxinBy similarity
Metal bindingi141 – 1411ZincBy similarity

GO - Molecular functioni

  1. auxin binding Source: UniProtKB
  2. receptor activity Source: InterPro
  3. zinc ion binding Source: UniProtKB

GO - Biological processi

  1. auxin-activated signaling pathway Source: UniProtKB-KW
  2. cytokinesis by cell plate formation Source: TAIR
  3. positive regulation of cell division Source: TAIR
  4. positive regulation of cell size Source: TAIR
  5. positive regulation of DNA endoreduplication Source: TAIR
  6. unidimensional cell growth Source: TAIR
Complete GO annotation...

Keywords - Molecular functioni

Receptor

Keywords - Biological processi

Auxin signaling pathway

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Auxin-binding protein 1
Short name:
ABP
Gene namesi
Name:ERABP1
Ordered Locus Names:At4g02980
ORF Names:T4I9.14
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 4

Organism-specific databases

TAIRiAT4G02980.

Subcellular locationi

GO - Cellular componenti

  1. endoplasmic reticulum lumen Source: InterPro
Complete GO annotation...

Keywords - Cellular componenti

Endoplasmic reticulum

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 33331 PublicationAdd
BLAST
Chaini34 – 198165Auxin-binding protein 1PRO_0000020613Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi46 – 461N-linked (GlcNAc...)Sequence Analysis
Glycosylationi130 – 1301N-linked (GlcNAc...)Sequence Analysis

Post-translational modificationi

Ubiquitinated by RMA2, leading to proteasomal degradation.1 Publication

Keywords - PTMi

Glycoprotein, Ubl conjugation

Proteomic databases

PaxDbiP33487.
PRIDEiP33487.

Expressioni

Gene expression databases

ExpressionAtlasiP33487. baseline and differential.
GenevestigatoriP33487.

Interactioni

Subunit structurei

Homodimer.By similarity

Protein-protein interaction databases

BioGridi13409. 1 interaction.
STRINGi3702.AT4G02980.1-P.

Structurei

3D structure databases

ProteinModelPortaliP33487.
SMRiP33487. Positions 43-194.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi195 – 1984Prevents secretion from ER

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiNOG123185.
HOGENOMiHOG000030816.
InParanoidiP33487.
OMAiKFPYYWD.
PhylomeDBiP33487.

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
InterProiIPR000526. Auxin-bd.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF02041. Auxin_BP. 1 hit.
[Graphical view]
PRINTSiPR00655. AUXINBINDNGP.
SUPFAMiSSF51182. SSF51182. 1 hit.
PROSITEiPS00014. ER_TARGET. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P33487-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MIVLSVGSAS SSPIVVVFSV ALLLFYFSET SLGAPCPING LPIVRNISDL
60 70 80 90 100
PQDNYGRPGL SHMTVAGSVL HGMKEVEIWL QTFAPGSETP IHRHSCEEVF
110 120 130 140 150
VVLKGSGTLY LAETHGNFPG KPIEFPIFAN STIHIPINDA HQVKNTGHED
160 170 180 190
LQVLVIISRP PIKIFIYEDW FMPHTAARLK FPYYWDEQCI QESQKDEL
Length:198
Mass (Da):22,044
Last modified:February 1, 1994 - v1
Checksum:i43440CFDCE9EFD67
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X55111 Genomic DNA. Translation: CAA38909.1.
X69901 Genomic DNA. Translation: CAA49526.1.
S40550 mRNA. Translation: AAB22612.1.
AF069442 Genomic DNA. Translation: AAC79108.1.
AL161495 Genomic DNA. Translation: CAB77783.1.
CP002687 Genomic DNA. Translation: AEE82256.1.
AF389278 mRNA. Translation: AAK63851.1.
AY093754 mRNA. Translation: AAM10378.1.
PIRiS31584.
RefSeqiNP_192207.1. NM_116532.2.
UniGeneiAt.148.

Genome annotation databases

EnsemblPlantsiAT4G02980.1; AT4G02980.1; AT4G02980.
GeneIDi828120.
KEGGiath:AT4G02980.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X55111 Genomic DNA. Translation: CAA38909.1 .
X69901 Genomic DNA. Translation: CAA49526.1 .
S40550 mRNA. Translation: AAB22612.1 .
AF069442 Genomic DNA. Translation: AAC79108.1 .
AL161495 Genomic DNA. Translation: CAB77783.1 .
CP002687 Genomic DNA. Translation: AEE82256.1 .
AF389278 mRNA. Translation: AAK63851.1 .
AY093754 mRNA. Translation: AAM10378.1 .
PIRi S31584.
RefSeqi NP_192207.1. NM_116532.2.
UniGenei At.148.

3D structure databases

ProteinModelPortali P33487.
SMRi P33487. Positions 43-194.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 13409. 1 interaction.
STRINGi 3702.AT4G02980.1-P.

Proteomic databases

PaxDbi P33487.
PRIDEi P33487.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT4G02980.1 ; AT4G02980.1 ; AT4G02980 .
GeneIDi 828120.
KEGGi ath:AT4G02980.

Organism-specific databases

TAIRi AT4G02980.

Phylogenomic databases

eggNOGi NOG123185.
HOGENOMi HOG000030816.
InParanoidi P33487.
OMAi KFPYYWD.
PhylomeDBi P33487.

Gene expression databases

ExpressionAtlasi P33487. baseline and differential.
Genevestigatori P33487.

Family and domain databases

Gene3Di 2.60.120.10. 1 hit.
InterProi IPR000526. Auxin-bd.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view ]
Pfami PF02041. Auxin_BP. 1 hit.
[Graphical view ]
PRINTSi PR00655. AUXINBINDNGP.
SUPFAMi SSF51182. SSF51182. 1 hit.
PROSITEi PS00014. ER_TARGET. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Structure of the gene for an auxin-binding protein and a gene for 7SL RNA from Arabidopsis thaliana."
    Shimomura S., Liu W., Inohara N., Watanabe S., Futai M.
    Plant Cell Physiol. 34:633-637(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: cv. Columbia.
  2. "Molecular analysis of an auxin binding protein gene located on chromosome 4 of Arabidopsis."
    Palme K., Hesse T., Campos N., Garbers C., Yanofsky M.F., Schell J.
    Plant Cell 4:193-201(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], PROTEIN SEQUENCE OF 34-68.
  3. "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana."
    Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M., de Simone V., Obermaier B.
    , Mache R., Mueller M., Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B., Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A., Martienssen R., McCombie W.R.
    Nature 402:769-777(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  4. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  5. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  6. "In vitro and in vivo interaction of AtRma2 E3 ubiquitin ligase and auxin-binding protein 1."
    Son O., Cho S.K., Kim S.J., Kim W.T.
    Biochem. Biophys. Res. Commun. 393:492-497(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: UBIQUITINATION BY RMA2.

Entry informationi

Entry nameiABP1_ARATH
AccessioniPrimary (citable) accession number: P33487
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1994
Last sequence update: February 1, 1994
Last modified: October 29, 2014
This is version 113 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names

External Data

Dasty 3