Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Inner membrane protein YohD

Gene

yohD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  • FtsZ-dependent cytokinesis Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG12017-MONOMER.
ECOL316407:JW2124-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YohD
Gene namesi
Name:yohD
Ordered Locus Names:b2136, JW2124
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12017. yohD.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 40PeriplasmicSequence analysisAdd BLAST40
Transmembranei41 – 61HelicalSequence analysisAdd BLAST21
Topological domaini62 – 121CytoplasmicSequence analysisAdd BLAST60
Transmembranei122 – 142HelicalSequence analysisAdd BLAST21
Topological domaini143 – 159PeriplasmicSequence analysisAdd BLAST17
Transmembranei160 – 180HelicalSequence analysisAdd BLAST21
Topological domaini181 – 192CytoplasmicSequence analysisAdd BLAST12

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001614161 – 192Inner membrane protein YohDAdd BLAST192

Proteomic databases

PaxDbiP33366.
PRIDEiP33366.

Interactioni

Protein-protein interaction databases

BioGridi4259177. 87 interactors.
DIPiDIP-12805N.
IntActiP33366. 1 interactor.
MINTiMINT-1269234.
STRINGi511145.b2136.

Structurei

3D structure databases

ProteinModelPortaliP33366.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the DedA family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105KHU. Bacteria.
COG0586. LUCA.
HOGENOMiHOG000105365.
InParanoidiP33366.
OMAiRMRESKV.
PhylomeDBiP33366.

Family and domain databases

InterProiIPR032818. DedA.
IPR032816. SNARE_assoc.
[Graphical view]
PANTHERiPTHR30353. PTHR30353. 1 hit.
PfamiPF09335. SNARE_assoc. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P33366-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDLNTLISQY GYAALVIGSL AEGETVTLLG GVAAHQGLLK FPLVVLSVAL
60 70 80 90 100
GGMIGDQVLY LCGRRFGGKL LRRFSKHQDK IERAQKLIQR HPYLFVIGTR
110 120 130 140 150
FMYGFRVIGP TLIGASQLPP KIFLPLNILG AFAWALIFTT IGYAGGQVIA
160 170 180 190
PWLHNLDQHL KHWVWLILVV VLVVGVRWWL KRRGKKKPDH QA
Length:192
Mass (Da):21,445
Last modified:February 1, 1994 - v1
Checksum:i562347F6A127825F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00007 Genomic DNA. Translation: AAA60498.1.
U00096 Genomic DNA. Translation: AAC75197.2.
AP009048 Genomic DNA. Translation: BAE76613.1.
PIRiG64981.
RefSeqiNP_416640.2. NC_000913.3.
WP_001296821.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75197; AAC75197; b2136.
BAE76613; BAE76613; BAE76613.
GeneIDi946661.
KEGGiecj:JW2124.
eco:b2136.
PATRICi32119615. VBIEscCol129921_2218.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00007 Genomic DNA. Translation: AAA60498.1.
U00096 Genomic DNA. Translation: AAC75197.2.
AP009048 Genomic DNA. Translation: BAE76613.1.
PIRiG64981.
RefSeqiNP_416640.2. NC_000913.3.
WP_001296821.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP33366.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259177. 87 interactors.
DIPiDIP-12805N.
IntActiP33366. 1 interactor.
MINTiMINT-1269234.
STRINGi511145.b2136.

Proteomic databases

PaxDbiP33366.
PRIDEiP33366.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75197; AAC75197; b2136.
BAE76613; BAE76613; BAE76613.
GeneIDi946661.
KEGGiecj:JW2124.
eco:b2136.
PATRICi32119615. VBIEscCol129921_2218.

Organism-specific databases

EchoBASEiEB1954.
EcoGeneiEG12017. yohD.

Phylogenomic databases

eggNOGiENOG4105KHU. Bacteria.
COG0586. LUCA.
HOGENOMiHOG000105365.
InParanoidiP33366.
OMAiRMRESKV.
PhylomeDBiP33366.

Enzyme and pathway databases

BioCyciEcoCyc:EG12017-MONOMER.
ECOL316407:JW2124-MONOMER.

Miscellaneous databases

PROiP33366.

Family and domain databases

InterProiIPR032818. DedA.
IPR032816. SNARE_assoc.
[Graphical view]
PANTHERiPTHR30353. PTHR30353. 1 hit.
PfamiPF09335. SNARE_assoc. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYOHD_ECOLI
AccessioniPrimary (citable) accession number: P33366
Secondary accession number(s): P76436, Q2MAU3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1994
Last sequence update: February 1, 1994
Last modified: November 2, 2016
This is version 114 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.