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Protein

Glycine betaine uptake system permease protein YehY

Gene

yehY

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Part of an ABC transporter complex involved in low-affinity glycine betaine uptake. Probably responsible for the translocation of the substrate across the membrane.1 Publication

GO - Molecular functioni

GO - Biological processi

  • amino acid transport Source: UniProtKB-KW
  • glycine betaine transport Source: EcoCyc
  • nitrogen compound transport Source: GO_Central
Complete GO annotation...

Keywords - Biological processi

Amino-acid transport, Transport

Enzyme and pathway databases

BioCyciEcoCyc:YEHY-MONOMER.
ECOL316407:JW2118-MONOMER.
RETL1328306-WGS:GSTH-496-MONOMER.

Protein family/group databases

TCDBi3.A.1.12.15. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
Glycine betaine uptake system permease protein YehYCurated
Gene namesi
Name:yehY
Ordered Locus Names:b2130, JW2118
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12011. yehY.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 55CytoplasmicCurated
Transmembranei6 – 2621HelicalSequence analysisAdd
BLAST
Topological domaini27 – 4418PeriplasmicCuratedAdd
BLAST
Transmembranei45 – 6521HelicalSequence analysisAdd
BLAST
Topological domaini66 – 694CytoplasmicCurated
Transmembranei70 – 9021HelicalSequence analysisAdd
BLAST
Topological domaini91 – 10616PeriplasmicCuratedAdd
BLAST
Transmembranei107 – 12721HelicalSequence analysisAdd
BLAST
Topological domaini128 – 13710CytoplasmicCurated
Transmembranei138 – 15821HelicalSequence analysisAdd
BLAST
Topological domaini159 – 18022PeriplasmicCuratedAdd
BLAST
Transmembranei181 – 20121HelicalSequence analysisAdd
BLAST
Topological domaini202 – 22423CytoplasmicCuratedAdd
BLAST
Transmembranei225 – 24521HelicalSequence analysisAdd
BLAST
Topological domaini246 – 2472PeriplasmicCurated
Transmembranei248 – 26821HelicalSequence analysisAdd
BLAST
Topological domaini269 – 32254CytoplasmicCuratedAdd
BLAST
Transmembranei323 – 34321HelicalSequence analysisAdd
BLAST
Topological domaini344 – 3452PeriplasmicCurated
Transmembranei346 – 36621HelicalSequence analysisAdd
BLAST
Topological domaini367 – 38519Cytoplasmic1 PublicationAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 385385Glycine betaine uptake system permease protein YehYPRO_0000060256Add
BLAST

Proteomic databases

PaxDbiP33361.

Expressioni

Inductioni

Expression is sigma S-dependent. Induced by both osmotic shock and entry into stationary phase.1 Publication

Interactioni

Subunit structurei

The complex is composed of two ATP-binding proteins (YehX), two transmembrane proteins (YehW and YehY) and a solute-binding protein (YehZ).Curated

Protein-protein interaction databases

BioGridi4260449. 6 interactions.
DIPiDIP-11913N.
IntActiP33361. 2 interactions.
MINTiMINT-1271646.
STRINGi511145.b2130.

Structurei

3D structure databases

ProteinModelPortaliP33361.
SMRiP33361. Positions 179-327.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini177 – 372196ABC transmembrane type-1PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 ABC transmembrane type-1 domain.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4107T5X. Bacteria.
COG1174. LUCA.
HOGENOMiHOG000218077.
InParanoidiP33361.
KOiK05846.
OMAiSPGSGLW.
OrthoDBiEOG6V7BK6.

Family and domain databases

Gene3Di1.10.3720.10. 1 hit.
InterProiIPR000515. MetI-like.
[Graphical view]
PfamiPF00528. BPD_transp_1. 1 hit.
[Graphical view]
SUPFAMiSSF161098. SSF161098. 1 hit.
PROSITEiPS50928. ABC_TM1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P33361-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTYFRINPVL ALLLLLTAIA AALPFISYAP NRLVSGEGRH LWQLWPQTIW
60 70 80 90 100
MLVGVGCAWL TACFIPGKKG SICALILAQF VFVLLVWGAG KAATQLAQNG
110 120 130 140 150
SALARTSLGS GFWLAAALAL LACSDAIRRI STHPLWRWLL HMQIAIIPLW
160 170 180 190 200
LLYSGTLNDL SLMKEYANRQ DVFDDALAQH LTLLFGAVLP ALVIGVPLGI
210 220 230 240 250
WCYFSTARQG AIFSLLNVIQ TVPSVALFGL LIAPLAALVT AFPWLGTLGI
260 270 280 290 300
AGTGMTPALI ALVLYALLPL VRGVVVGLNQ IPRDVLESAR AMGMSGAQRF
310 320 330 340 350
LHVQLPLALP VFLRSLRVVM VQTVGMAVIA ALIGAGGFGA LVFQGLLSSA
360 370 380
IDLVLLGVIP VIVLAVLTDA LFDLLIALLK VKRND
Length:385
Mass (Da):41,139
Last modified:November 1, 1997 - v2
Checksum:iE57055E3A2B141CC
GO

Sequence cautioni

The sequence AAA60493.1 differs from that shown. Reason: Erroneous initiation. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti346 – 38540LLSSA…VKRND → AAKQRH in AAA60493 (Ref. 1) CuratedAdd
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00007 Genomic DNA. Translation: AAA60493.1. Different initiation.
U00096 Genomic DNA. Translation: AAC75191.1.
AP009048 Genomic DNA. Translation: BAE76607.1.
PIRiA64981.
RefSeqiNP_416634.1. NC_000913.3.
WP_000220837.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75191; AAC75191; b2130.
BAE76607; BAE76607; BAE76607.
GeneIDi946660.
KEGGiecj:JW2118.
eco:b2130.
PATRICi32119599. VBIEscCol129921_2210.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00007 Genomic DNA. Translation: AAA60493.1. Different initiation.
U00096 Genomic DNA. Translation: AAC75191.1.
AP009048 Genomic DNA. Translation: BAE76607.1.
PIRiA64981.
RefSeqiNP_416634.1. NC_000913.3.
WP_000220837.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP33361.
SMRiP33361. Positions 179-327.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260449. 6 interactions.
DIPiDIP-11913N.
IntActiP33361. 2 interactions.
MINTiMINT-1271646.
STRINGi511145.b2130.

Protein family/group databases

TCDBi3.A.1.12.15. the atp-binding cassette (abc) superfamily.

Proteomic databases

PaxDbiP33361.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75191; AAC75191; b2130.
BAE76607; BAE76607; BAE76607.
GeneIDi946660.
KEGGiecj:JW2118.
eco:b2130.
PATRICi32119599. VBIEscCol129921_2210.

Organism-specific databases

EchoBASEiEB1949.
EcoGeneiEG12011. yehY.

Phylogenomic databases

eggNOGiENOG4107T5X. Bacteria.
COG1174. LUCA.
HOGENOMiHOG000218077.
InParanoidiP33361.
KOiK05846.
OMAiSPGSGLW.
OrthoDBiEOG6V7BK6.

Enzyme and pathway databases

BioCyciEcoCyc:YEHY-MONOMER.
ECOL316407:JW2118-MONOMER.
RETL1328306-WGS:GSTH-496-MONOMER.

Miscellaneous databases

PROiP33361.

Family and domain databases

Gene3Di1.10.3720.10. 1 hit.
InterProiIPR000515. MetI-like.
[Graphical view]
PfamiPF00528. BPD_transp_1. 1 hit.
[Graphical view]
SUPFAMiSSF161098. SSF161098. 1 hit.
PROSITEiPS50928. ABC_TM1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Automated multiplex sequencing of the E.coli genome."
    Richterich P., Lakey N., Gryan G., Jaehn L., Mintz L., Robison K., Church G.M.
    Submitted (OCT-1993) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / BHB2600.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Sigma(s)-dependent regulation of yehZYXW, which encodes a putative osmoprotectant ABC transporter of Escherichia coli."
    Checroun C., Gutierrez C.
    FEMS Microbiol. Lett. 236:221-226(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: INDUCTION.
    Strain: K12 / MC4100 / ATCC 35695 / DSM 6574.
  5. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.
  6. "YehZYXW of Escherichia coli is a low-affinity, non-osmoregulatory betaine-specific ABC transporter."
    Lang S., Cressatti M., Mendoza K.E., Coumoundouros C.N., Plater S.M., Culham D.E., Kimber M.S., Wood J.M.
    Biochemistry 54:5735-5747(2015) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION IN GLYCINE BETAINE UPTAKE.
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYEHY_ECOLI
AccessioniPrimary (citable) accession number: P33361
Secondary accession number(s): P76435, Q2MAU9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1994
Last sequence update: November 1, 1997
Last modified: March 16, 2016
This is version 126 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Was originally thought to be part of an osmoprotectant uptake system (PubMed:15251200). However, it was shown later that the complex does not mediate osmotic stress protection (PubMed:26325238).2 Publications

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.