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Protein

Uncharacterized fimbrial-like protein YehD

Gene

yehD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Part of the yehABCD fimbrial operon. Could contribute to adhesion to various surfaces in specific environmental niches.1 Publication

GO - Biological processi

  • cell adhesion Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG11990-MONOMER.
ECOL316407:JW2098-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized fimbrial-like protein YehD
Gene namesi
Name:yehD
Ordered Locus Names:b2111, JW2098
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11990. yehD.

Subcellular locationi

GO - Cellular componenti

  • pilus Source: EcoCyc
Complete GO annotation...

Pathology & Biotechi

Disruption phenotypei

Deletion of the operon under classical laboratory conditions does not result in any major effect on E.coli capacity to form biofilms compared with the wild-type strain.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2222Sequence analysisAdd
BLAST
Chaini23 – 180158Uncharacterized fimbrial-like protein YehDPRO_0000013868Add
BLAST

Proteomic databases

EPDiP33343.
PaxDbiP33343.
PRIDEiP33343.

Expressioni

Inductioni

Expression is negatively regulated by H-NS and subjected to cAMP receptor protein (CRP)-mediated catabolite repression.1 Publication

Interactioni

Protein-protein interaction databases

BioGridi4260437. 107 interactions.
IntActiP33343. 3 interactions.
STRINGi511145.b2111.

Structurei

3D structure databases

ProteinModelPortaliP33343.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the fimbrial protein family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG41063W2. Bacteria.
ENOG41122IH. LUCA.
HOGENOMiHOG000009509.
OMAiKCTNTAN.
OrthoDBiEOG6BS8QJ.

Family and domain databases

Gene3Di2.60.40.1090. 1 hit.
InterProiIPR008966. Adhesion_dom.
IPR000259. Adhesion_dom_fimbrial.
[Graphical view]
PfamiPF00419. Fimbrial. 1 hit.
[Graphical view]
SUPFAMiSSF49401. SSF49401. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P33343-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRSIIAAAV FSSFFMSAGV FAADVDTGTL TIKGNIAESP CKFEAGGDSV
60 70 80 90 100
SINMPTVPTS VFEGKAKYST YDDAVGVTSS MLKISCPKEV AGVKLSLITN
110 120 130 140 150
DKITGNDKAI ASSNDTVGYY LYLGDNSDVL DVSAPFNIES YKTAEGQYAI
160 170 180
PFKAKYLKLT DNSVQSGDVL SSLVMRVAQD
Length:180
Mass (Da):19,061
Last modified:February 1, 1994 - v1
Checksum:iEF91972EC1DE9CD6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00007 Genomic DNA. Translation: AAA60475.1.
U00096 Genomic DNA. Translation: AAC75172.1.
AP009048 Genomic DNA. Translation: BAE76589.1.
PIRiF64978.
RefSeqiNP_416614.1. NC_000913.3.
WP_000830456.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75172; AAC75172; b2111.
BAE76589; BAE76589; BAE76589.
GeneIDi946619.
KEGGiecj:JW2098.
eco:b2111.
PATRICi32119555. VBIEscCol129921_2188.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00007 Genomic DNA. Translation: AAA60475.1.
U00096 Genomic DNA. Translation: AAC75172.1.
AP009048 Genomic DNA. Translation: BAE76589.1.
PIRiF64978.
RefSeqiNP_416614.1. NC_000913.3.
WP_000830456.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP33343.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260437. 107 interactions.
IntActiP33343. 3 interactions.
STRINGi511145.b2111.

Proteomic databases

EPDiP33343.
PaxDbiP33343.
PRIDEiP33343.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75172; AAC75172; b2111.
BAE76589; BAE76589; BAE76589.
GeneIDi946619.
KEGGiecj:JW2098.
eco:b2111.
PATRICi32119555. VBIEscCol129921_2188.

Organism-specific databases

EchoBASEiEB1933.
EcoGeneiEG11990. yehD.

Phylogenomic databases

eggNOGiENOG41063W2. Bacteria.
ENOG41122IH. LUCA.
HOGENOMiHOG000009509.
OMAiKCTNTAN.
OrthoDBiEOG6BS8QJ.

Enzyme and pathway databases

BioCyciEcoCyc:EG11990-MONOMER.
ECOL316407:JW2098-MONOMER.

Miscellaneous databases

PROiP33343.

Family and domain databases

Gene3Di2.60.40.1090. 1 hit.
InterProiIPR008966. Adhesion_dom.
IPR000259. Adhesion_dom_fimbrial.
[Graphical view]
PfamiPF00419. Fimbrial. 1 hit.
[Graphical view]
SUPFAMiSSF49401. SSF49401. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Automated multiplex sequencing of the E.coli genome."
    Richterich P., Lakey N., Gryan G., Jaehn L., Mintz L., Robison K., Church G.M.
    Submitted (OCT-1993) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / BHB2600.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Escherichia coli K-12 possesses multiple cryptic but functional chaperone-usher fimbriae with distinct surface specificities."
    Korea C.G., Badouraly R., Prevost M.C., Ghigo J.M., Beloin C.
    Environ. Microbiol. 12:1957-1977(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, INDUCTION, DISRUPTION PHENOTYPE.
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYEHD_ECOLI
AccessioniPrimary (citable) accession number: P33343
Secondary accession number(s): Q2MAW7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1994
Last sequence update: February 1, 1994
Last modified: April 13, 2016
This is version 100 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Miscellaneous

The operon is cryptic under classical laboratory conditions, but is functional when constitutively expressed.1 Publication

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.