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Protein

Protein YebF

Gene

yebF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11807-MONOMER.
ECOL316407:JW1836-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YebF
Gene namesi
Name:yebF
Ordered Locus Names:b1847, JW1836
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11807. yebF.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 21211 PublicationAdd
BLAST
Chaini22 – 11897Protein YebFPRO_0000045946Add
BLAST

Proteomic databases

PaxDbiP33219.
PRIDEiP33219.

Interactioni

Protein-protein interaction databases

BioGridi4263507. 3 interactions.
STRINGi511145.b1847.

Structurei

Secondary structure

1
118
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi40 – 5213Combined sources
Turni53 – 575Combined sources
Helixi77 – 793Combined sources
Beta strandi81 – 833Combined sources
Beta strandi86 – 894Combined sources
Beta strandi92 – 976Combined sources
Beta strandi104 – 1074Combined sources
Turni108 – 1114Combined sources
Beta strandi112 – 1143Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2LQVNMR-A22-118[»]
ProteinModelPortaliP33219.
SMRiP33219. Positions 22-118.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the YebF family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105RSZ. Bacteria.
ENOG411244I. LUCA.
HOGENOMiHOG000121241.
OMAiFPKCEGM.

Family and domain databases

HAMAPiMF_01435. YebF. 1 hit.
InterProiIPR020236. Uncharacterised_YebF.
IPR025603. YebF/ColM_immunity.
[Graphical view]
PfamiPF13995. YebF. 1 hit.
[Graphical view]
ProDomiPD077599. Vacuole-related_protein_17. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P33219-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKRGAFLGL LLVSACASVF AANNETSKSV TFPKCEDLDA AGIAASVKRD
60 70 80 90 100
YQQNRVARWA DDQKIVGQAD PVAWVSLQDI QGKDDKWSVP LTVRGKSADI
110
HYQVSVDCKA GMAEYQRR
Length:118
Mass (Da):12,962
Last modified:February 7, 2006 - v2
Checksum:i8C84A35F882DCE9E
GO

Sequence cautioni

The sequence AAA23859 differs from that shown. Reason: Erroneous initiation. Curated
The sequence BAA15653 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L20897 Genomic DNA. Translation: AAA23859.1. Different initiation.
U00096 Genomic DNA. Translation: AAC74917.2.
AP009048 Genomic DNA. Translation: BAA15653.1. Different initiation.
PIRiG64946.
RefSeqiNP_416361.2. NC_000913.3.
WP_001350516.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74917; AAC74917; b1847.
BAA15653; BAA15653; BAA15653.
GeneIDi946363.
KEGGiecj:JW1836.
eco:b1847.
PATRICi32119015. VBIEscCol129921_1925.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L20897 Genomic DNA. Translation: AAA23859.1. Different initiation.
U00096 Genomic DNA. Translation: AAC74917.2.
AP009048 Genomic DNA. Translation: BAA15653.1. Different initiation.
PIRiG64946.
RefSeqiNP_416361.2. NC_000913.3.
WP_001350516.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2LQVNMR-A22-118[»]
ProteinModelPortaliP33219.
SMRiP33219. Positions 22-118.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263507. 3 interactions.
STRINGi511145.b1847.

Proteomic databases

PaxDbiP33219.
PRIDEiP33219.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74917; AAC74917; b1847.
BAA15653; BAA15653; BAA15653.
GeneIDi946363.
KEGGiecj:JW1836.
eco:b1847.
PATRICi32119015. VBIEscCol129921_1925.

Organism-specific databases

EchoBASEiEB1755.
EcoGeneiEG11807. yebF.

Phylogenomic databases

eggNOGiENOG4105RSZ. Bacteria.
ENOG411244I. LUCA.
HOGENOMiHOG000121241.
OMAiFPKCEGM.

Enzyme and pathway databases

BioCyciEcoCyc:EG11807-MONOMER.
ECOL316407:JW1836-MONOMER.

Miscellaneous databases

PROiP33219.

Family and domain databases

HAMAPiMF_01435. YebF. 1 hit.
InterProiIPR020236. Uncharacterised_YebF.
IPR025603. YebF/ColM_immunity.
[Graphical view]
PfamiPF13995. YebF. 1 hit.
[Graphical view]
ProDomiPD077599. Vacuole-related_protein_17. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Entry informationi

Entry nameiYEBF_ECOLI
AccessioniPrimary (citable) accession number: P33219
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1994
Last sequence update: February 7, 2006
Last modified: September 7, 2016
This is version 110 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.