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Protein

Protein YebF

Gene

yebF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11807-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YebF
Gene namesi
Name:yebF
Ordered Locus Names:b1847, JW1836
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11807 yebF

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 211 PublicationAdd BLAST21
ChainiPRO_000004594622 – 118Protein YebFAdd BLAST97

Proteomic databases

PaxDbiP33219
PRIDEiP33219

Interactioni

Protein-protein interaction databases

BioGridi4263507, 4 interactors
STRINGi316385.ECDH10B_1988

Structurei

Secondary structure

1118
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi40 – 52Combined sources13
Turni53 – 57Combined sources5
Helixi77 – 79Combined sources3
Beta strandi81 – 83Combined sources3
Beta strandi86 – 89Combined sources4
Beta strandi92 – 97Combined sources6
Beta strandi104 – 107Combined sources4
Turni108 – 111Combined sources4
Beta strandi112 – 114Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2LQVNMR-A22-118[»]
ProteinModelPortaliP33219
SMRiP33219
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the YebF family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105RSZ Bacteria
ENOG411244I LUCA
HOGENOMiHOG000121241
OMAiCKAGTIT

Family and domain databases

Gene3Di3.10.450.300, 1 hit
HAMAPiMF_01435 YebF, 1 hit
InterProiView protein in InterPro
IPR020236 Uncharacterised_YebF
IPR038703 YebF/Cmi_sf
IPR025603 YebF/ColM_immunity
PfamiView protein in Pfam
PF13995 YebF, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD077599 Vacuole-related_protein_17, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P33219-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKRGAFLGL LLVSACASVF AANNETSKSV TFPKCEDLDA AGIAASVKRD
60 70 80 90 100
YQQNRVARWA DDQKIVGQAD PVAWVSLQDI QGKDDKWSVP LTVRGKSADI
110
HYQVSVDCKA GMAEYQRR
Length:118
Mass (Da):12,962
Last modified:February 7, 2006 - v2
Checksum:i8C84A35F882DCE9E
GO

Sequence cautioni

The sequence AAA23859 differs from that shown. Reason: Erroneous initiation.Curated
The sequence BAA15653 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L20897 Genomic DNA Translation: AAA23859.1 Different initiation.
U00096 Genomic DNA Translation: AAC74917.2
AP009048 Genomic DNA Translation: BAA15653.1 Different initiation.
PIRiG64946
RefSeqiNP_416361.2, NC_000913.3
WP_001350516.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC74917; AAC74917; b1847
BAA15653; BAA15653; BAA15653
GeneIDi946363
KEGGiecj:JW1836
eco:b1847
PATRICifig|1411691.4.peg.402

Similar proteinsi

Entry informationi

Entry nameiYEBF_ECOLI
AccessioniPrimary (citable) accession number: P33219
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1994
Last sequence update: February 7, 2006
Last modified: April 25, 2018
This is version 118 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

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