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Protein

UPF0033 protein YeeD

Gene

yeeD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11894-MONOMER.
ECOL316407:JW1994-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0033 protein YeeD
Gene namesi
Name:yeeD
Ordered Locus Names:b2012, JW1994
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11894. yeeD.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7575UPF0033 protein YeeDPRO_0000159068Add
BLAST

Proteomic databases

PaxDbiP33014.
PRIDEiP33014.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
clpBP632843EBI-9130839,EBI-546182

Protein-protein interaction databases

BioGridi4260415. 13 interactions.
IntActiP33014. 20 interactions.
STRINGi511145.b2012.

Structurei

3D structure databases

ProteinModelPortaliP33014.
SMRiP33014. Positions 2-73.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0033 family.Curated

Phylogenomic databases

eggNOGiCOG0425. LUCA.
HOGENOMiHOG000259289.
OMAiCTQATDS.
PhylomeDBiP33014.

Family and domain databases

Gene3Di3.30.110.40. 1 hit.
InterProiIPR001455. TusA-like.
[Graphical view]
PfamiPF01206. TusA. 1 hit.
[Graphical view]
SUPFAMiSSF64307. SSF64307. 1 hit.
PROSITEiPS01148. UPF0033. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P33014-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVIKKLDVVT QVCPFPLIEA KAALAEMVSG DELVIEFDCT QATEAIPQWA
60 70
AEEGHAITDY QQIGDAAWSI TVQKA
Length:75
Mass (Da):8,148
Last modified:February 1, 1994 - v1
Checksum:i5D6254BE41BEFAFA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00009 Genomic DNA. Translation: AAA16418.1.
U00096 Genomic DNA. Translation: AAC75073.1.
AP009048 Genomic DNA. Translation: BAA15840.1.
PIRiC64966.
RefSeqiNP_416516.1. NC_000913.3.
WP_000234896.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75073; AAC75073; b2012.
BAA15840; BAA15840; BAA15840.
GeneIDi946539.
KEGGiecj:JW1994.
eco:b2012.
PATRICi32119359. VBIEscCol129921_2089.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00009 Genomic DNA. Translation: AAA16418.1.
U00096 Genomic DNA. Translation: AAC75073.1.
AP009048 Genomic DNA. Translation: BAA15840.1.
PIRiC64966.
RefSeqiNP_416516.1. NC_000913.3.
WP_000234896.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP33014.
SMRiP33014. Positions 2-73.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260415. 13 interactions.
IntActiP33014. 20 interactions.
STRINGi511145.b2012.

Proteomic databases

PaxDbiP33014.
PRIDEiP33014.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75073; AAC75073; b2012.
BAA15840; BAA15840; BAA15840.
GeneIDi946539.
KEGGiecj:JW1994.
eco:b2012.
PATRICi32119359. VBIEscCol129921_2089.

Organism-specific databases

EchoBASEiEB1840.
EcoGeneiEG11894. yeeD.

Phylogenomic databases

eggNOGiCOG0425. LUCA.
HOGENOMiHOG000259289.
OMAiCTQATDS.
PhylomeDBiP33014.

Enzyme and pathway databases

BioCyciEcoCyc:EG11894-MONOMER.
ECOL316407:JW1994-MONOMER.

Miscellaneous databases

PROiP33014.

Family and domain databases

Gene3Di3.30.110.40. 1 hit.
InterProiIPR001455. TusA-like.
[Graphical view]
PfamiPF01206. TusA. 1 hit.
[Graphical view]
SUPFAMiSSF64307. SSF64307. 1 hit.
PROSITEiPS01148. UPF0033. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYEED_ECOLI
AccessioniPrimary (citable) accession number: P33014
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1994
Last sequence update: February 1, 1994
Last modified: September 7, 2016
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.