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P32922

- SIGM2_REOVJ

UniProt

P32922 - SIGM2_REOVJ

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Protein
Inner capsid protein sigma-2
Gene
S2
Organism
Reovirus type 2 (strain D5/Jones) (T2J) (Mammalian orthoreovirus 2)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Inner capsid (core) component.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner capsid protein sigma-2
Short name:
Sigma2
Gene namesi
Name:S2
OrganismiReovirus type 2 (strain D5/Jones) (T2J) (Mammalian orthoreovirus 2)
Taxonomic identifieri10885 [NCBI]
Taxonomic lineageiVirusesdsRNA virusesReoviridaeSpinareovirinaeOrthoreovirus
Virus hostiMammalia [TaxID: 40674]
ProteomesiUP000006370: Genome

Subcellular locationi

Virion Reviewed prediction
Note: Found in the inner capsid (150 copies).

GO - Cellular componenti

  1. viral inner capsid Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, Inner capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 418418Inner capsid protein sigma-2
PRO_0000222750Add
BLAST

Interactioni

Subunit structurei

Interacts with protein mu-NS; in viral inclusions By similarity.

Structurei

3D structure databases

ProteinModelPortaliP32922.
SMRiP32922. Positions 2-418.

Family & Domainsi

Sequence similaritiesi

Family and domain databases

InterProiIPR004317. Sigma_1_2_reovir.
[Graphical view]
PfamiPF03084. Sigma_1_2. 1 hit.
[Graphical view]
ProDomiPD004419. Sigma_1_2_reovir. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

P32922-1 [UniParc]FASTAAdd to Basket

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MARAAFLFKT VGFGGLQNVP INDELASHLL RAGNSPWQLT QFLDWISLGR    50
GLATSALVPT AGSRYYQMSC LLSGTLQIPF RPNHRWGDVR FLRLVWSAPT 100
LDGLVIAPPP ILAQPAIQAQ ADRAYDCDDY PFLARDPRFK HRVYQQLSAI 150
TLLNLTGFGP ISYVRVDEDM WSGDVSQLLM NYFGHTFAEI AYTLCQASAN 200
RPWEHDGTYA RMTQIVLSLF WLSYVGVIHQ HNTYRTFYFQ CNRRGDAAEV 250
WILSCSLTHS AQIRAGNRSL FVMPTSPDWN MDVNLILSST LTGCLCSGSQ 300
LPLIDNNSVP NVSRNIHGWT GRGGNQLHGF QVRRMITEYC DRLRRDGVMT 350
PAQQMQIEAL GDQTQQFKRD KLEAWALEDD QYNRAHPNST MFRTKPFTNA 400
QWGRGNTAAT SAAIAALI 418
Length:418
Mass (Da):47,045
Last modified:October 1, 1993 - v1
Checksum:iE3D4351F55524213
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
L19775 Genomic RNA. Translation: AAA47248.1.
PIRiB41306. FOXRJS.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
L19775 Genomic RNA. Translation: AAA47248.1 .
PIRi B41306. FOXRJS.

3D structure databases

ProteinModelPortali P32922.
SMRi P32922. Positions 2-418.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Family and domain databases

InterProi IPR004317. Sigma_1_2_reovir.
[Graphical view ]
Pfami PF03084. Sigma_1_2. 1 hit.
[Graphical view ]
ProDomi PD004419. Sigma_1_2_reovir. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
ProtoNeti Search...

Publicationsi

  1. "The S2 gene nucleotide sequences of prototype strains of the three reovirus serotypes: characterization of reovirus core protein sigma 2."
    Dermody T.S., Schiff L.A., Nibert M.L., Coombs K.M., Fields B.N.
    J. Virol. 65:5721-5731(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Entry informationi

Entry nameiSIGM2_REOVJ
AccessioniPrimary (citable) accession number: P32922
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1993
Last sequence update: October 1, 1993
Last modified: October 16, 2013
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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