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Protein

37S ribosomal protein MRP4, mitochondrial

Gene

MRP4

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • structural constituent of ribosome Source: SGD

GO - Biological processi

  • mitochondrial translation Source: SGD
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciYEAST:G3O-31027-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
37S ribosomal protein MRP4, mitochondrial
Gene namesi
Name:MRP4
Synonyms:MRP4A
Ordered Locus Names:YHL004W
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
Proteomesi
  • UP000002311 Componenti: Chromosome VIII

Organism-specific databases

EuPathDBiFungiDB:YHL004W.
SGDiS000000996. MRP4.

Subcellular locationi

GO - Cellular componenti

  • mitochondrial small ribosomal subunit Source: SGD
Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 2525MitochondrionSequence analysisAdd
BLAST
Chaini26 – 39436937S ribosomal protein MRP4, mitochondrialPRO_0000134345Add
BLAST

Proteomic databases

MaxQBiP32902.
PeptideAtlasiP32902.

Interactioni

Subunit structurei

Component of the mitochondrial small ribosomal subunit. Mature mitochondrial ribosomes consist of a small (37S) and a large (54S) subunit. The 37S subunit contains at least 33 different proteins and 1 molecule of RNA (15S). The 54S subunit contains at least 45 different proteins and 1 molecule of RNA (21S).2 Publications

Protein-protein interaction databases

BioGridi36421. 80 interactions.
DIPiDIP-5035N.
IntActiP32902. 69 interactions.
MINTiMINT-482507.

Structurei

3D structure databases

ProteinModelPortaliP32902.
SMRiP32902. Positions 180-373.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S2P family.Curated

Keywords - Domaini

Transit peptide

Phylogenomic databases

GeneTreeiENSGT00390000017382.
HOGENOMiHOG000248605.
InParanoidiP32902.
KOiK02967.
OMAiSLWRSST.
OrthoDBiEOG77M8ZR.

Family and domain databases

HAMAPiMF_00291_B. Ribosomal_S2_B.
InterProiIPR001865. Ribosomal_S2.
IPR005706. Ribosomal_S2_bac/mit/plastid.
IPR018130. Ribosomal_S2_CS.
IPR023591. Ribosomal_S2_flav_dom.
[Graphical view]
PANTHERiPTHR12534. PTHR12534. 1 hit.
PfamiPF00318. Ribosomal_S2. 1 hit.
[Graphical view]
PRINTSiPR00395. RIBOSOMALS2.
SUPFAMiSSF52313. SSF52313. 1 hit.
TIGRFAMsiTIGR01011. rpsB_bact. 1 hit.
PROSITEiPS00962. RIBOSOMAL_S2_1. 1 hit.
PS00963. RIBOSOMAL_S2_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P32902-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQRHVFARNF RRLSLLRNPS LTKRFQSSAS GAANTPNNND EVMLLQQKLL
60 70 80 90 100
YDEIRSELKS LSQVPEDEIL PELKKSLEQD KLSDKEQQLE AELSDFFRNY
110 120 130 140 150
ALLNKLFDSK TLDGQSSTTT AAATPTKPYP NLIPSANDKP YSSQELFLRQ
160 170 180 190 200
LNHSMRTAKL GATISKVYYP HKDIFYPPLP ENITVESLMS AGVHLGQSTS
210 220 230 240 250
LWRSSTQSYI YGEYKGIHII DLNQTLSYLK RAAKVVEGVS ESGGIILFLG
260 270 280 290 300
TRQGQKRGLE EAAKKTHGYY VSTRWIPGTL TNSTEISGIW EKQEIDSNDN
310 320 330 340 350
PTERALSPNE TSKQVKPDLL VVLNPTENRN ALLEAIKSRV PTIAIIDTDS
360 370 380 390
EPSLVTYPIP GNDDSLRSVN FLLGVLARAG QRGLQNRLAR NNEK
Length:394
Mass (Da):44,152
Last modified:October 1, 1993 - v1
Checksum:i81A1CB33134BC559
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M82841 Genomic DNA. Translation: AAA34793.1.
U10555 Genomic DNA. Translation: AAB68428.1.
AY558385 Genomic DNA. Translation: AAS56711.1.
BK006934 Genomic DNA. Translation: DAA06683.1.
PIRiA42115.
RefSeqiNP_011859.1. NM_001179084.1.

Genome annotation databases

EnsemblFungiiYHL004W; YHL004W; YHL004W.
GeneIDi856384.
KEGGisce:YHL004W.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M82841 Genomic DNA. Translation: AAA34793.1.
U10555 Genomic DNA. Translation: AAB68428.1.
AY558385 Genomic DNA. Translation: AAS56711.1.
BK006934 Genomic DNA. Translation: DAA06683.1.
PIRiA42115.
RefSeqiNP_011859.1. NM_001179084.1.

3D structure databases

ProteinModelPortaliP32902.
SMRiP32902. Positions 180-373.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi36421. 80 interactions.
DIPiDIP-5035N.
IntActiP32902. 69 interactions.
MINTiMINT-482507.

Proteomic databases

MaxQBiP32902.
PeptideAtlasiP32902.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYHL004W; YHL004W; YHL004W.
GeneIDi856384.
KEGGisce:YHL004W.

Organism-specific databases

EuPathDBiFungiDB:YHL004W.
SGDiS000000996. MRP4.

Phylogenomic databases

GeneTreeiENSGT00390000017382.
HOGENOMiHOG000248605.
InParanoidiP32902.
KOiK02967.
OMAiSLWRSST.
OrthoDBiEOG77M8ZR.

Enzyme and pathway databases

BioCyciYEAST:G3O-31027-MONOMER.

Miscellaneous databases

PROiP32902.

Family and domain databases

HAMAPiMF_00291_B. Ribosomal_S2_B.
InterProiIPR001865. Ribosomal_S2.
IPR005706. Ribosomal_S2_bac/mit/plastid.
IPR018130. Ribosomal_S2_CS.
IPR023591. Ribosomal_S2_flav_dom.
[Graphical view]
PANTHERiPTHR12534. PTHR12534. 1 hit.
PfamiPF00318. Ribosomal_S2. 1 hit.
[Graphical view]
PRINTSiPR00395. RIBOSOMALS2.
SUPFAMiSSF52313. SSF52313. 1 hit.
TIGRFAMsiTIGR01011. rpsB_bact. 1 hit.
PROSITEiPS00962. RIBOSOMAL_S2_1. 1 hit.
PS00963. RIBOSOMAL_S2_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Characterization of a yeast mitochondrial ribosomal protein structurally related to the mammalian 68-kDa high affinity laminin receptor."
    Davis S.C., Tzagoloff A., Ellis S.R.
    J. Biol. Chem. 267:5508-5514(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  3. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  4. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  5. "Identification of 12 new yeast mitochondrial ribosomal proteins including 6 that have no prokaryotic homologues."
    Saveanu C., Fromont-Racine M., Harington A., Ricard F., Namane A., Jacquier A.
    J. Biol. Chem. 276:15861-15867(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION IN THE MITOCHONDRIAL RIBOSOMAL SMALL COMPLEX, IDENTIFICATION BY MASS SPECTROMETRY.
  6. "Tag-mediated isolation of yeast mitochondrial ribosome and mass spectrometric identification of its new components."
    Gan X., Kitakawa M., Yoshino K., Oshiro N., Yonezawa K., Isono K.
    Eur. J. Biochem. 269:5203-5214(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION IN THE MITOCHONDRIAL RIBOSOMAL SMALL COMPLEX, IDENTIFICATION BY MASS SPECTROMETRY.
  7. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
  8. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
  9. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
    Strain: ATCC 76625 / YPH499.

Entry informationi

Entry nameiRT04_YEAST
AccessioniPrimary (citable) accession number: P32902
Secondary accession number(s): D3DKR0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1993
Last sequence update: October 1, 1993
Last modified: June 8, 2016
This is version 132 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 6890 molecules/cell in log phase SD medium.1 Publication

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families
  3. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  4. Yeast chromosome VIII
    Yeast (Saccharomyces cerevisiae) chromosome VIII: entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.